BAC Information

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BAC

Clone NameB6Ng01-340K14
Chromosome6 (Build37)
Map Location 116,138,625 - 116,318,851
singlet/doubletdoublet
Overlap geneLOC100043425, EG666648, D6Wsu116e, Anubl1, March8
Upstream geneSyn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, EG666634
Downstream geneAlox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340K14.bB6Ng01-340K14.g
ACCGA124291GA124292
length5251,107
definitionB6Ng01-340K14.b B6Ng01-340K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,138,625 - 116,139,155)(116,317,741 - 116,318,851)
sequence
tcagttctagcttcataatacttctggaaatccaatagtacccttaaaat
aagtttaattttaaagaattaaaaaaaaaaaacactttgtgatggaatat
atgcctgctattttactcagtggatctgagacacagaaacacagagacag
acagacatgtacacacagaaggagacaaacacatacacagtcacaaacac
acacatacacatacaccaaaagaaaagctataaatgttacttggtagtag
agtgcttgcctagcatgcacaaggctctgggtgcgatccccagaaccaca
aaagaaaagaaaaatgcctaaaatatgatctttgctttcatgaaggtctc
aatgtgaagtagtgatagtgcatgaaacagaatataagaaagcattaaag
gacagaagtgacagtggagagacataaagtctgcacctgatcacagccaa
aagtctgagaagtggtaggagtataaagtggtaggagtataaagtggtag
gagtataaagtggtaggagtataaa
gaattcaatcctaggacctacatgatggaagaagagaatctcctaccaca
agcgccgtgcacattcaagtgtataaaaacaagtgagcaaattctgatag
ctataaaagttaaatgaaatgcaactacaaatgaatttattaaggaactc
aactaaagagagaatgtccttctaaaactataatttacatatttttaaaa
agtcataaagtacagaggtttattggtgtggctctatactctaaatacat
gaatgaggagacaaggactggaaaacatgtgttctacaggacagaaacat
tttacacatgttattagaaagtcacttttttttcttcttatcatttgaga
caaggttttgttaggaaactcactatcaagaacaattaggccttgaactt
tcagcaattttgtttctgtctcaggagatcttctagttgtgaaattgtgc
cacaatatcttttttttttttttaaattaggtactttcttcattcgtatc
tccaatgctatcctaaaagtcccccccacccgacccccactcccacttct
cggccctggcgttcccctgcactgatgtgccacaatatctagccaaataa
attattgaaaaaaaaaatcaaaaccctcccagacagatgatgtcgacatg
tctcggaggagatgctcgtgcacaaggccacagctggcgaactgaagcag
aggcggtgccatccgaagaacaaggggaggagagaactcatgtaacacct
gcacagatagatatgcacacactacggctgcacaatttacaaataaataa
atgtctagtaaaacctgtcaatgaccaatgtgaccaatgtgagcatgtat
ctcatgtttctagggagcaattcaaacctaggaatattccaccacagaaa
agcaagcacacagtagcaaacgacaatcacaggaacccacctcctgagct
cagtgaatgagagcatgaaaagtcctcagtctccaaagatttttaggcca
cattactacaatcaaagaaaagtaccctcattctcccaaatttaagacag
gttaaataactgtgatgctagataggcatgggataacttatgtagtttta
tttgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_116138625_116139155
seq2: B6Ng01-340K14.b_44_574

seq1  GAATTCTCAGTTCTAGCTTCATAATACTTCTGGAAATCCAATAGTACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTCTAGCTTCATAATACTTCTGGAAATCCAATAGTACCCT  50

seq1  TAAAATAAGTTTAATTTTAAAGAATTAAAAAAAAAAAACACTTTGTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAGTTTAATTTTAAAGAATTAAAAAAAAAAAACACTTTGTGATG  100

seq1  GAATATATGCCTGCTATTTTACTCAGTGGATCTGAGACACAGAAACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATGCCTGCTATTTTACTCAGTGGATCTGAGACACAGAAACACAG  150

seq1  AGACAGACAGACATGTACACACAGAAGGAGACAAACACATACACAGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACAGACATGTACACACAGAAGGAGACAAACACATACACAGTCAC  200

seq1  AAACACACACATACACATACACCAAAAGAAAAGCTATAAATGTTACTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACACATACACATACACCAAAAGAAAAGCTATAAATGTTACTTGG  250

seq1  TAGTAGAGTGCTTGCCTAGCATGCACAAGGCTCTGGGTGCGATCCCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGAGTGCTTGCCTAGCATGCACAAGGCTCTGGGTGCGATCCCCAGA  300

seq1  ACCACAAAAGAAAAGAAAAATGCCTAAAATATGATCTTTGCTTTCATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAAAGAAAAGAAAAATGCCTAAAATATGATCTTTGCTTTCATGAA  350

seq1  GGTCTCAATGTGAAGTAGTGATAGTGCATGAAACAGAATATAAGAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAATGTGAAGTAGTGATAGTGCATGAAACAGAATATAAGAAAGCA  400

seq1  TTAAAGGACAGAAGTGACAGTGGAGAGACATAAAGTCTGCACCTGATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGACAGAAGTGACAGTGGAGAGACATAAAGTCTGCACCTGATCAC  450

seq1  AGCCAAAAGTCTGAGAAGTGGTAGGAGTATAAAGTGGTAGGAGTATAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAAGTCTGAGAAGTGGTAGGAGTATAAAGTGGTAGGAGTATAAAG  500

seq1  TGGTAGGAGTATAAAGTGGTAGGAGTATAAA  531
      |||||||||||||||||||||||||||||||
seq2  TGGTAGGAGTATAAAGTGGTAGGAGTATAAA  531

seq1: chr6_116317741_116318851
seq2: B6Ng01-340K14.g_66_1172 (reverse)

seq1  TTTCATATAATAACTACATA--GTATCCCATTGCTTATTCTAGCATCACA  48
      ||||| |||| |||||||||   ||||||| ||| || ||||||||||||
seq2  TTTCAAATAA-AACTACATAAGTTATCCCA-TGCCTA-TCTAGCATCACA  47

seq1  GTTTATTTAAACTGTCTTAATTTGGGGAGAAATTGAGGGTACTTTTCTTT  98
      | |||||||| ||||||||| || |||||||  |||||||||||||||||
seq2  G-TTATTTAACCTGTCTTAAATTTGGGAGAA--TGAGGGTACTTTTCTTT  94

seq1  GATGTAAGTAATGTTGGCTTAAAAATCTTT-GAGACTGAGGACTTTTTCA  147
      |||   ||||||| |||| ||||||||||| |||||||||||| ||||||
seq2  GATTGTAGTAATG-TGGCCTAAAAATCTTTGGAGACTGAGGAC-TTTTCA  142

seq1  TGCTCTCATTCACTGAGCTCAGGAGGTGTGTTCCTGTGATTGTTCGTTTG  197
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  TGCTCTCATTCACTGAGCTCAGGAGGTGGGTTCCTGTGATTG-TCGTTTG  191

seq1  CTTACTGTGTTGCTTGCTTTTCTGTGGTGG-ATATT-CTAGGTTTGAATT  245
      | ||||||| |||||||||||||||||||| ||||| |||||||||||||
seq2  C-TACTGTG-TGCTTGCTTTTCTGTGGTGGAATATTCCTAGGTTTGAATT  239

seq1  GCT-CCTAG-AACATGAGATACATGCTCACATTGGTCACATTGGTCATTG  293
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTAGAAACATGAGATACATGCTCACATTGGTCACATTGGTCATTG  289

seq1  ACAGGTTTTACTAGACATTTATTTATTTGTAAATTGTGCAGCCGTAGTGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTTACTAGACATTTATTTATTTGTAAATTGTGCAGCCGTAGTGT  339

seq1  GTGCATATCTATCTGTGCAGGTGTTACATGAGTTCTCTCCTCCCCTTGTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATATCTATCTGTGCAGGTGTTACATGAGTTCTCTCCTCCCCTTGTT  389

seq1  CTTCGGATGGCACCGCCTCTGCTTCAGTTCGCCAGCTGTGGCCTTGTGCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGATGGCACCGCCTCTGCTTCAGTTCGCCAGCTGTGGCCTTGTGCA  439

seq1  CGAGCATCTCCTCCGAGACATGTCGACATCATCTGTCTGGGAGGGTTTTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCATCTCCTCCGAGACATGTCGACATCATCTGTCTGGGAGGGTTTTG  489

seq1  ATTTTTTTTTTCAATAATTTATTTGGCTAGATATTGTGGCACATCAGTGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTCAATAATTTATTTGGCTAGATATTGTGGCACATCAGTGC  539

seq1  AGGGGAACGCCAGGGCCGAGAAGTGGGAGTGGGGGTCGGGTGGGGGGGAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAACGCCAGGGCCGAGAAGTGGGAGTGGGGGTCGGGTGGGGGGGAC  589

seq1  TTTTAGGATAGCATTGGAGATACGAATGAAGAAAGTACCTAATTTAAAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGATAGCATTGGAGATACGAATGAAGAAAGTACCTAATTTAAAAA  639

seq1  AAAAAAAAAGATATTGTGGCACAATTTCACAACTAGAAGATCTCCTGAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGATATTGTGGCACAATTTCACAACTAGAAGATCTCCTGAGA  689

seq1  CAGAAACAAAATTGCTGAAAGTTCAAGGCCTAATTGTTCTTGATAGTGAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAAAATTGCTGAAAGTTCAAGGCCTAATTGTTCTTGATAGTGAG  739

seq1  TTTCCTAACAAAACCTTGTCTCAAATGATAAGAAGAAAAAAAAGTGACTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAACAAAACCTTGTCTCAAATGATAAGAAGAAAAAAAAGTGACTT  789

seq1  TCTAATAACATGTGTAAAATGTTTCTGTCCTGTAGAACACATGTTTTCCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAACATGTGTAAAATGTTTCTGTCCTGTAGAACACATGTTTTCCA  839

seq1  GTCCTTGTCTCCTCATTCATGTATTTAGAGTATAGAGCCACACCAATAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGTCTCCTCATTCATGTATTTAGAGTATAGAGCCACACCAATAAA  889

seq1  CCTCTGTACTTTATGACTTTTTAAAAATATGTAAATTATAGTTTTAGAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTACTTTATGACTTTTTAAAAATATGTAAATTATAGTTTTAGAAG  939

seq1  GACATTCTCTCTTTAGTTGAGTTCCTTAATAAATTCATTTGTAGTTGCAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTCTCTTTAGTTGAGTTCCTTAATAAATTCATTTGTAGTTGCAT  989

seq1  TTCATTTAACTTTTATAGCTATCAGAATTTGCTCACTTGTTTTTATACAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAACTTTTATAGCTATCAGAATTTGCTCACTTGTTTTTATACAC  1039

seq1  TTGAATGTGCACGGCGCTTGTGGTAGGAGATTCTCTTCTTCCATCATGTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTGCACGGCGCTTGTGGTAGGAGATTCTCTTCTTCCATCATGTA  1089

seq1  GGTCCTAGGATTGAATTC  1111
      ||||||||||||||||||
seq2  GGTCCTAGGATTGAATTC  1107