MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-340M01
Chromosome	6 (Build37)
Map Location	28,557,254 - 28,690,375
singlet/doublet	doublet
Overlap gene	Snd1
Upstream gene	Grm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350
Downstream gene	Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo
Link	Open Mouse BAC browser

Click to get alignment info.

name	Grm8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14823 MGI:1351345
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	6530409C15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76224 MGI:1923474
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	AA407452 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627049 MGI:1889334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041304 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041304
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs

name	LOC384360 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384360
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 4 Proteins pseudo : _no_value

name	Gcc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74375 MGI:1921625
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arf5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11844 MGI:99434
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fscn3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56223 MGI:1890386
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pax4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18506 MGI:97488
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041350 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041350
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Snd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56463 MGI:1929266
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrrc4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192198 MGI:2182081
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041367 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041367
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Lep (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16846 MGI:104663
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbm28 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68272 MGI:2655711
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	D330027H18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:101359 MGI:2141677
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 16 ESTs

name	Impdh1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23917 MGI:96567
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310016C08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69573 MGI:1916823
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI507611 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245884 MGI:2141439
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs, 4 Proteins

name	BC048651 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330277 MGI:3032524
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Calu (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12321 MGI:1097158
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Opn1sw (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12057 MGI:99438
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4921511K06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232664 MGI:1918128
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 81 ESTs, 1 Protein

name	Flnc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68794 MGI:95557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp6v1f (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66144 MGI:1913394
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668210 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668210 MGI:3644212
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Crim2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:333088 MGI:2141640
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Irf5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27056 MGI:1350924
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tnpo3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320938 MGI:1196412
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tspan33 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232670 MGI:1919012
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Smo (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319757 MGI:108075
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Grm8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116812903 GeneID:14823 MGI:1351345
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glutamate receptor, metabotropic 8 transcript_id : NM_008174.2

name	6530409C15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94377088 GeneID:76224 MGI:1923474
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6530409C15 gene transcript_id : XM_994638.1

name	AA407452 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126157487 GeneID:627049 MGI:1889334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EST AA407452 transcript_id : NM_001081678.1

name	LOC100041304 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254878 GeneID:100041304
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs product : similar to Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-75) transcript_id : XM_001476129.1

name	Gcc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803462 GeneID:74375 MGI:1921625
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : golgi coiled coil 1 transcript_id : NM_028900.3

name	Arf5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680721 GeneID:11844 MGI:99434
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ADP-ribosylation factor 5 transcript_id : NM_007480.1

name	Fscn3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982709 GeneID:56223 MGI:1890386
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus) transcript_id : NM_019569.2

name	Pax4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45544612 GeneID:18506 MGI:97488
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : paired box gene 4 transcript_id : NM_011038.1

name	Snd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:77404391 GeneID:56463 MGI:1929266
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : staphylococcal nuclease and tudor domain containing 1 transcript_id : NM_019776.2

name	Lrrc4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124339784 GeneID:192198 MGI:2182081
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 4 transcript_id : NM_138682.2

name	LOC100041367 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254885 GeneID:100041367
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to Ubtf protein transcript_id : XM_001476248.1

name	Lep (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328437 GeneID:16846 MGI:104663
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leptin transcript_id : NM_008493.3

name	Rbm28 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21536243 GeneID:68272 MGI:2655711
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein 28 transcript_id : NM_133925.1

name	Rbm28 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21536229 GeneID:68272 MGI:2655711
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein 28 transcript_id : NM_026650.1

name	D330027H18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94377092 GeneID:101359 MGI:2141677
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 16 ESTs product : RIKEN cDNA D330027H18 gene transcript_id : XM_149840.5

name	Impdh1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328208 GeneID:23917 MGI:96567
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inosine 5'-phosphate dehydrogenase 1 transcript_id : NM_011829.2

name	2310016C08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32129263 GeneID:69573 MGI:1916823
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310016C08 gene transcript_id : NM_023516.3

name	AI507611 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254893 GeneID:245884 MGI:2141439
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs, 3 Proteins product : expressed sequence AI507611, transcript variant 1 transcript_id : XM_001477461.1

name	AI507611 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254895 GeneID:245884 MGI:2141439
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 2 Proteins product : expressed sequence AI507611, transcript variant 2 transcript_id : XM_001477480.1

name	BC048651 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85797651 GeneID:330277 MGI:3032524
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC048651 transcript_id : NM_207258.2

name	Calu (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119672916 GeneID:12321 MGI:1097158
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calumenin transcript_id : NM_007594.3

name	Calu (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119672915 GeneID:12321 MGI:1097158
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calumenin transcript_id : NM_184053.2

name	Opn1sw (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31543369 GeneID:12057 MGI:99438
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan) transcript_id : NM_007538.2

name	4921511K06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254887 GeneID:232664 MGI:1918128
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 81 ESTs, 1 Protein product : RIKEN cDNA 4921511K06 gene, transcript variant 1 transcript_id : XM_485735.5

name	Flnc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487138 GeneID:68794 MGI:95557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : filamin C, gamma (actin binding protein 280) transcript_id : NM_001081185.1

name	Atp6v1f (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369990 GeneID:66144 MGI:1913394
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, H+ transporting, lysosomal V1 subunit F transcript_id : NM_025381.2

name	EG668210 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94377097 GeneID:668210 MGI:3644212
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG668210 transcript_id : XM_001000046.1

name	Crim2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803071 GeneID:333088 MGI:2141640
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cysteine rich BMP regulator 2 (chordin like) transcript_id : NM_001029985.2

name	Irf5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347490 GeneID:27056 MGI:1350924
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interferon regulatory factor 5 transcript_id : NM_012057.2

name	Tnpo3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130371 GeneID:320938 MGI:1196412
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transportin 3 transcript_id : NM_177296.4

name	Tspan33 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130219 GeneID:232670 MGI:1919012
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tetraspanin 33 transcript_id : NM_146173.2

name	Smo (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39812461 GeneID:319757 MGI:108075
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : smoothened homolog (Drosophila) transcript_id : NM_176996.3

name	Grm8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116812904 GeneID:14823 MGI:1351345
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0001642 - group III metabotropic glutamate receptor activity [Evidence IDA]; GO:0008067 - metabotropic glutamate, GABA-B-like receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007268 - synaptic transmission [Evidence TAS]; GO:0035249 - synaptic transmission, glutamatergic [Evidence TAS] codon_start : 1 note : G protein coupled receptor, family C, group 1, member H; G protein-coupled receptor, family C, group 1, member H product : glutamate receptor, metabotropic 8 protein_id : NP_032200.2

name	6530409C15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94377089 GeneID:76224 MGI:1923474
definition	codon_start : 1 product : hypothetical protein LOC76224 protein_id : XP_999732.1

name	AA407452 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126157488 GeneID:627049 MGI:1889334
definition	codon_start : 1 product : hypothetical protein LOC627049 protein_id : NP_001075147.1

name	LOC100041304 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254879 GeneID:100041304
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476179.1

name	Gcc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75991702 CCDS:CCDS19951.1 GeneID:74375 MGI:1921625
definition	GO_component : GO:0042025 - host cell nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : Golgi coiled coil protein 1 protein_id : NP_083176.2

name	Arf5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680722 CCDS:CCDS19952.1 GeneID:11844 MGI:99434
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005525 - GTP binding [Evidence IEA] [Evidence TAS]; GO:0003924 - GTPase activity [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO:0015031 - protein transport [Evidence TAS]; GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : ADP-ribosylation factor 5 protein_id : NP_031506.1

name	Fscn3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982710 GeneID:56223 MGI:1890386
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence ISS]; GO:0051015 - actin filament binding [Evidence IEA]; GO:0030674 - protein binding, bridging [Evidence IEA] GO_process : GO:0007286 - spermatid development [Evidence TAS] codon_start : 1 note : fascin (testis) product : fascin 3 protein_id : NP_062515.2

name	Pax4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45544613 GeneID:18506 MGI:97488
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence TAS] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence TAS] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0009887 - organ morphogenesis [Evidence TAS]; GO:0045597 - positive regulation of cell differentiation [Evidence IMP]; GO:0045595 - regulation of cell differentiation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence TAS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : paired box gene 4 protein_id : NP_035168.1

name	Snd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77404392 CCDS:CCDS19953.1 GeneID:56463 MGI:1929266
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0004518 - nuclease activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : p100 co-activator product : staphylococcal nuclease domain containing 1 protein_id : NP_062750.2

name	Lrrc4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124339785 GeneID:192198 MGI:2182081
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : LIBG-like protein; LRRC4-like protein; brain tumor-associated protein product : leucine rich repeat containing 4 protein_id : NP_619623.2

name	LOC100041367 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254886 GeneID:100041367
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476298.1

name	Lep (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678678 CCDS:CCDS19955.1 GeneID:16846 MGI:104663
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA]; GO:0005615 - extracellular space [Evidence TAS] [Evidence IDA] GO_function : GO:0008083 - growth factor activity [Evidence IDA]; GO:0005179 - hormone activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008206 - bile acid metabolism [Evidence IDA]; GO:0042755 - eating behavior [Evidence IGI]; GO:0006006 - glucose metabolism [Evidence IMP]; GO:0006629 - lipid metabolism [Evidence IMP]; GO:0045639 - positive regulation of myeloid cell differentiation [Evidence IDA]; GO:0030300 - regulation of cholesterol absorption [Evidence IDA]; GO:0019222 - regulation of metabolism [Evidence TAS] [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : leptin protein_id : NP_032519.1

name	Rbm28 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21536244 GeneID:68272 MGI:2655711
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2 product : RNA binding motif protein 28 isoform 2 protein_id : NP_598686.1

name	Rbm28 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21536230 GeneID:68272 MGI:2655711
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1 product : RNA binding motif protein 28 isoform 1 protein_id : NP_080926.1

name	D330027H18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28522815 GeneID:101359 MGI:2141677
definition	codon_start : 1 product : hypothetical protein LOC101359 protein_id : XP_149840.2

name	Impdh1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328209 GeneID:23917 MGI:96567
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0003938 - IMP dehydrogenase activity [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA] GO_process : GO:0006177 - GMP biosynthesis [Evidence IEA]; GO:0046651 - lymphocyte proliferation [Evidence IMP]; GO:0006164 - purine nucleotide biosynthesis [Evidence IMP] codon_start : 1 product : inosine 5'-phosphate dehydrogenase 1 protein_id : NP_035959.2

name	2310016C08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963711 GeneID:69573 MGI:1916823
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : hypoxia-inducible protein 2 protein_id : NP_076005.1

name	AI507611 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254894 GeneID:245884 MGI:2141439
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001477511.1

name	AI507611 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254896 GeneID:245884 MGI:2141439
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001477530.1

name	BC048651 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85797652 GeneID:330277 MGI:3032524
definition	codon_start : 1 product : testes development-related NYD-SP18 protein_id : NP_997141.2

name	Calu (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680840 CCDS:CCDS19957.1 GeneID:12321 MGI:1097158
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : calumenin isoform 1 protein_id : NP_031620.1

name	Calu (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41282022 CCDS:CCDS19958.1 GeneID:12321 MGI:1097158
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : calumenin isoform 2 protein_id : NP_908942.1

name	Opn1sw (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680776 CCDS:CCDS19959.1 GeneID:12057 MGI:99438
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0001750 - photoreceptor outer segment [Evidence IDA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007602 - phototransduction [Evidence IEA]; GO:0018298 - protein-chromophore linkage [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 note : blue cone pigment; S Opsin; SWS opsin; Blue Opsin; Blue/UV Opsin; Blue Cone Opsin; Short Wavelength Sensitive opsin product : opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan) protein_id : NP_031564.1

name	4921511K06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254888 GeneID:232664 MGI:1918128
definition	codon_start : 1 product : hypothetical protein LOC232664 isoform 1 protein_id : XP_485735.5

name	Flnc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487139 GeneID:68794 MGI:95557
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence TAS]; GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence TAS] [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0030029 - actin filament-based process [Evidence TAS] codon_start : 1 note : actin-binding protein 280; filamin, gamma product : filamin C, gamma protein_id : NP_001074654.1

name	Atp6v1f (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21314824 CCDS:CCDS19960.1 GeneID:66144 MGI:1913394
definition	GO_component : GO:0016469 - proton-transporting two-sector ATPase complex [Evidence IEA] GO_function : GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : ATPase, vacuolar, 14 kD product : ATPase, H+ transporting, V1 subunit F protein_id : NP_079657.1

name	EG668210 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94377098 GeneID:668210 MGI:3644212
definition	codon_start : 1 product : similar to hCG2042334 protein_id : XP_001000046.1

name	Crim2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71725381 GeneID:333088 MGI:2141640
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0030513 - positive regulation of BMP signaling pathway [Evidence IDA] codon_start : 1 exception : mismatches in translation product : cysteine rich BMP regulator 2 (chordin like) protein_id : NP_001025156.1

name	Irf5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754368 CCDS:CCDS19962.1 GeneID:27056 MGI:1350924
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 function : transcription factor product : interferon regulatory factor 5 protein_id : NP_036187.1

name	Tnpo3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54312056 CCDS:CCDS19963.1 GeneID:320938 MGI:1196412
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : transportin-SR product : transportin 3 protein_id : NP_796270.2

name	Tspan33 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122703 CCDS:CCDS19964.1 GeneID:232670 MGI:1919012
definition	codon_start : 1 note : penumbra product : tetraspanin 33 protein_id : NP_666285.1

name	Smo (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39812462 CCDS:CCDS19965.1 GeneID:319757 MGI:108075
definition	GO_component : GO:0005929 - cilium [Evidence IDA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004926 - non-G-protein coupled 7TM receptor activity [Evidence IEA] GO_process : GO:0007417 - central nervous system development [Evidence IGI]; GO:0007368 - determination of left/right symmetry [Evidence IMP]; GO:0009953 - dorsal/ventral pattern formation [Evidence IMP]; GO:0043392 - negative regulation of DNA binding [Evidence IGI]; GO:0001649 - osteoblast differentiation [Evidence IMP]; GO:0007389 - pattern specification [Evidence IMP]; GO:0007224 - smoothened signaling pathway [Evidence IMP]; GO:0001570 - vasculogenesis [Evidence IMP] codon_start : 1 exception : mismatches in translation note : bent body product : smoothened homolog protein_id : NP_795970.2

name	LOC100041350 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041350
definition	number : 4 pseudo : _no_value

name	LOC100041350 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041350
definition	number : 3 pseudo : _no_value

name	LOC100041350 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041350
definition	number : 2 pseudo : _no_value

name	LOC100041350 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041350
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:130990
definition	standard_name : D6Mit89

name	(CDS detail)
type	STS
link
xref	UniSTS:121933
definition	standard_name : d4mit9

name	(CDS detail)
type	STS
link
xref	UniSTS:438993
definition	standard_name : REN114198

name	(CDS detail)
type	STS
link
xref	UniSTS:284163
definition	standard_name : ECD03076

name	(CDS detail)
type	STS
link
xref	UniSTS:439570
definition	standard_name : REN114775

name	(CDS detail)
type	STS
link
xref	UniSTS:161423
definition	standard_name : RH124601

name	(CDS detail)
type	STS
link
xref	UniSTS:439653
definition	standard_name : REN114858

name	(CDS detail)
type	STS
link
xref	UniSTS:439654
definition	standard_name : REN114859

name	(CDS detail)
type	STS
link
xref	UniSTS:298064
definition	standard_name : ECD17051

name	(CDS detail)
type	STS
link
xref	UniSTS:123788
definition	standard_name : 27.MMHAP56FLA6.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:161535
definition	standard_name : RH124713

name	(CDS detail)
type	STS
link
xref	UniSTS:179841
definition	standard_name : AV352552

name	(CDS detail)
type	STS
link
xref	UniSTS:440234
definition	standard_name : REN115439

name	(CDS detail)
type	STS
link
xref	UniSTS:283356
definition	standard_name : ECD02256

name	(CDS detail)
type	STS
link
xref	UniSTS:32528
definition	standard_name : SHGC-56778

name	(CDS detail)
type	STS
link
xref	UniSTS:212966
definition	standard_name : RH129669

name	(CDS detail)
type	STS
link
xref	UniSTS:451834
definition	standard_name : stSG613726

name	(CDS detail)
type	STS
link
xref	UniSTS:144126
definition	standard_name : Pax4

name	(CDS detail)
type	STS
link
xref	UniSTS:144127
definition	standard_name : Pax4

name	(CDS detail)
type	STS
link
xref	UniSTS:125315
definition	standard_name : MHAa75g2.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:122646
definition	standard_name : 01.MMHAP18FRA7.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:123959
definition	standard_name : 31.MMHAP80FRC10.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:116594
definition	standard_name : D6Mit160

name	(CDS detail)
type	STS
link
xref	UniSTS:4885
definition	standard_name : GDB:4585141

name	(CDS detail)
type	STS
link
xref	UniSTS:161043
definition	standard_name : RH124221

name	(CDS detail)
type	STS
link
xref	UniSTS:272963
definition	standard_name : PMC316374P2

name	(CDS detail)
type	STS
link
xref	UniSTS:143768
definition	standard_name : Lep

name	(CDS detail)
type	STS
link
xref	UniSTS:272206
definition	standard_name : PMC23608P1

name	(CDS detail)
type	STS
link
xref	UniSTS:271732
definition	standard_name : PMC187774P1

name	(CDS detail)
type	STS
link
xref	UniSTS:143769
definition	standard_name : Lep

name	(CDS detail)
type	STS
link
xref	UniSTS:143770
definition	standard_name : Lep

name	(CDS detail)
type	STS
link
xref	UniSTS:143772
definition	standard_name : Lep

name	(CDS detail)
type	STS
link
xref	UniSTS:116596
definition	standard_name : D6Mit307

name	(CDS detail)
type	STS
link
xref	UniSTS:179350
definition	standard_name : AI503051

name	(CDS detail)
type	STS
link
xref	UniSTS:185658
definition	standard_name : AW455481

name	(CDS detail)
type	STS
link
xref	UniSTS:130723
definition	standard_name : D6Mit180

name	(CDS detail)
type	STS
link
xref	UniSTS:165453
definition	standard_name : AW049004

name	(CDS detail)
type	STS
link
xref	UniSTS:261866
definition	standard_name : AI555223

name	(CDS detail)
type	STS
link
xref	UniSTS:164315
definition	standard_name : AI507611

name	(CDS detail)
type	STS
link
xref	UniSTS:130816
definition	standard_name : D6Mit267

name	(CDS detail)
type	STS
link
xref	UniSTS:464721
definition	standard_name : Calu

name	(CDS detail)
type	STS
link
xref	UniSTS:464722
definition	standard_name : Calu

name	(CDS detail)
type	STS
link
xref	UniSTS:267216
definition	standard_name : MARC_11525-11526:1001518036:1

name	(CDS detail)
type	STS
link
xref	UniSTS:235394
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:159489
definition	standard_name : AW541262

name	(CDS detail)
type	STS
link
xref	UniSTS:179352
definition	standard_name : AW551857

name	(CDS detail)
type	STS
link
xref	UniSTS:141171
definition	standard_name : Opn1sw

name	(CDS detail)
type	STS
link
xref	UniSTS:477293
definition	standard_name : Flnc

name	(CDS detail)
type	STS
link
xref	UniSTS:142631
definition	standard_name : D6Rck39

name	(CDS detail)
type	STS
link
xref	UniSTS:179351
definition	standard_name : AW060220

name	(CDS detail)
type	STS
link
xref	UniSTS:179353
definition	standard_name : AW491843

name	(CDS detail)
type	STS
link
xref	UniSTS:167476
definition	standard_name : D6Ertd313e

name	(CDS detail)
type	STS
link
xref	UniSTS:209775
definition	standard_name : RH127018

name	(CDS detail)
type	STS
link
xref	UniSTS:223216
definition	standard_name : RH141220

name	(CDS detail)
type	STS
link
xref	UniSTS:209984
definition	standard_name : RH135988

name	(CDS detail)
type	STS
link
xref	UniSTS:145610
definition	standard_name : AU049162

name	(CDS detail)
type	STS
link
xref	UniSTS:160120
definition	standard_name : AI035228

name	LOC384360 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254880 GeneID:384360
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 4 Proteins product : similar to Kelch domain containing 4 pseudo : _no_value transcript_id : XR_032572.1

clone name	MSMg01-358D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-069P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529A01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-455D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-212E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-186O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-216B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-234F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121J23
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-340M01.b	B6Ng01-340M01.g
ACC	GA124356	GA124357
length	1,198	1,170
definition	B6Ng01-340M01.b	B6Ng01-340M01.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(28,557,254 - 28,558,465)	(28,689,199 - 28,690,375)
sequence	gaattctttcccagagttatccattgtacactccctagatatgaaatatc aattttacaagctggcaaaatggtatttaatggtggctgacaggatagtg tttaaggacaatatatattggatacttaaatttttctattatctgactct tggcacagatcattgaatttaagttgtattgagattgcagatgtagctgc cttaataacctctgctgtgctgcctgtttatttagtctcggaccttccta agcgtttctgctttccaagcatgcacagaagaaaataaaacagtttcagc ttctaccttcatatctccttgcattaggaaagacatctaaaaaatatcag ggacatttttgaggatgctttttctggcctcaagcatggagccagaccag ttttatatgatttgttggcatgaagtttttgtttctgctttccctgcttc tgaggcttaacttgttgataatacctagtgattcagggttttgccacatg gaaacttaaaaagttgtgggctaagtttggtaaatgtggtgctcaaatgc tcgatttcatgcttctctcattttcctttgaattttaaattgctcttcat gtatgttagttatatgcagtttcttctaaatggcctcttggataatacat tgttcagttagataagtaaatgaatgtctgtgttactgagcgtgactcat ttaaaatctcatttgttacaatgtctttgtccactgtctgcaaattttgt gtccccttgatctgcagcacccccagcttttcaaaaaattgaataaggcg tagagaccaggatttggggggacagcttaccctgaggactctatccgaat gcctttcctttgatctcttgttggtttttctttgatctttggctatattt tttgtagttgactatgtgtgtgcacatatacatgtgatgtttaagatgga atatctgaatcaaatcccaaggaacttgagtgactaatttgctatgatac tgtacacacacctgttggttgactgaataagtcaccttctggtggcatat atttgcttgtatttcttctcgtctcgcatgaggaatgtctgggcgccacc cttttctcatcaatttttatttcactctttctgcctcttgacaatgtctt actcctttaaggcctaaccttgaaccttgggatagcgttggcgttggt	gaattcccatcaccacaatcactcttccattaacatcaaagaataacctt gaggtagacaaattacacacataggtgaccctgttaatacagacatactc tatcagcactgggaagggaagctcaatgatgaagaaaccgtcgggcccaa ggagacttcttggaagcaccacagatattttccctacattagaatgtctg ttccccggcatgaactggctgtgttgctggccccttagggccaactaatc ataatgcataatcagtgaaacaagggggcagacacagataagaatggaga tcagaactaatagctaaggacattgaagcaaacatgtttttgcacgttaa aaactattgtgattgttcactgccgtagttagcaatcttcgtagggctgt acagaataggcgaattacttctgccatggcatagaagacaaatcacaacc acactcatcactccacactcttcctccattccacacagtgggttaattct tggaatgagcttctggtttgtctgtgaggagtcaactgtacagcatgcta ttctctggaagtaaacgggactctggtagggagaacacctgggaacgaac tcaagctctagtgcttccagaaagcacgtacaatgctgaagccaactagc catctcccggctagttattaatatttcacagtaagagtgtgtgaggggtc tggtatgtgtacgcaaactttagttagctgcatatttaactagaataaag gaaacatagaagagagtcacacagaaaaacaatcagaacaaaacagcatt ctaccatgtttttataaagctgctgaatgtaggccatcaataatctctca ttaagtgacgtctggcttacatcacctcatgctgttggcttagatggcaa catcacatcactcaggtgtcccatagtcagagcagagaactggttgtctg ggcctgggtctacctctgtacattagtagagacacgggctggattcttat ttgtggttctctcatagttaaaaatctctaccttcatcttgaatacatcc caattagctaacgaacttccaaatgaactgcaagcttaggaccagtctga tgaatgcttaccacctgaacagggtatggcagatacctttagatctcagc agtactgctcttcgaataag
quality values	Open. Hide. 58 36 27 39 58 58 58 62 62 62 62 38 20 62 62 62 62 62 56 47 62 39 39 62 62 62 62 62 51 42 44 41 56 50 38 33 59 62 59 62 62 59 43 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 54 62 62 62 62 54 54 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 54 54 54 54 62 62 59 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 59 49 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 54 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 54 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 49 58 58 58 58 58 58 54 58 49 54 58 58 58 58 54 58 58 58 58 58 58 58 58 58 54 58 58 58 52 58 58 58 58 58 58 58 58 58 58 52 58 58 58 58 58 58 58 58 58 58 58 58 47 58 58 54 58 58 58 51 58 58 58 58 58 58 58 58 53 58 58 58 54 58 58 58 51 51 58 58 58 51 53 58 46 58 58 58 53 58 58 51 58 58 49 51 46 50 58 58 54 58 35 38 58 58 58 58 51 58 49 49 37 51 51 53 51 51 52 58 58 58 51 58 53 40 49 53 51 53 53 58 40 49 58 50 53 58 58 52 49 58 58 49 38 58 40 54 58 58 44 58 51 40 50 42 54 51 54 25 58 53 52 51 47 41 58 53 43 53 58 50 38 38 49 49 50 51 53 53 50 49 54 54 54 49 49 37 49 37 52 50 54 45 53 51 54 54 51 42 53 49 32 49 33 31 35 53 53 40 40 32 54 32 52 54 54 51 46 29 47 40 33 54 54 47 34 34 39 37 37 44 52 52 45 39 32 40 37 35 54 51 54 44 45 42 52 54 54 54 45 39 23 54 54 54 54 53 37 47 41 46 53 37 34 25 6 30 31 32 34 32 16 38 23 31 32 33 32 35 31 22 13 46 53 45 53 51 51 52 32 29 18 28 28 43 32 32 30 16 41 40 32 30 34 16 31 33 32 36 35 31 31 31 24 46 19 44 30 30 43 36 30 26 51 38 33 35 32 51 31 30 31 38 32 32 32 24 22 25 18 31 38 32 32 48 48 46 31 43 28 46 30 31 33 35 31 31 46 31 32 30 27 31 31 26 29 32 48 46 46 46 30 37 22 38 33 33 31 32 26 20 34 28 27 32 23 29 27 37 23 30 33 33 36 27 41 22 31 29 35 24 38 31 31 37 28 16 38 22 48 28 14 30 14 33 10 17 25 14 21 30 25 27 24 32 31 25 30 42 32 32 48 31 31 28 44 31 11 18 14 14 21 9 15 22 20 29 48 17 27 27 31 32 32 28 21 27 48 26 15 27 31 23 31 32 34 22 22 32 27 33 13 21 32 19 25 8 22 43 9 16 24 17 15 10 24 25 7 11 24 25 16 24 22 19 9 18 17 28 20 16 24 9 7 20 6 6 7 18 16 15 4 3 13 17 13 13 8 10 8 18 29 18 10 12 15 11 16 12 25 18 34 13 14 15 9 19 11 20 17 7 24 13 24 16 8 21 3 5 9 22 17 13 13 12 6 3 6 8 16 23 11 3 5 4 8 13 9 24 9 3 13 22 4 4 6 18 13 23 7 9 5 24 28 28 28 13 6 5 22 16 16 9 5 4 9 14 17 6 10 6 6 7 7 5 16 7 3 3 3 1 5 21 5 12 8 12 8 14 8 9 8 13 3 1 3 8 5 10 5 11 5 3 1 1 3 8 5 1 3 1 2 2 8 3 1 3 3 3 8 5 3 2 3 6 4 3 8 8 9 4 1 3 4 4 2 2	Open. Hide. 62 49 38 39 62 62 62 47 28 46 44 37 38 25 24 28 50 51 56 59 62 62 62 62 62 62 62 44 43 62 59 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 42 54 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 59 62 62 62 59 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 54 62 54 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 56 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 41 49 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 46 62 58 54 58 58 58 58 58 58 54 58 58 58 54 58 58 58 58 58 58 58 58 58 58 54 58 58 52 54 58 54 54 58 58 58 58 54 58 58 58 58 58 58 58 58 54 54 58 58 58 58 54 58 58 58 58 58 54 54 54 58 48 41 52 41 58 45 41 58 58 58 58 58 54 54 54 58 58 58 33 58 38 49 52 42 58 51 51 54 58 58 45 47 46 58 58 50 58 53 50 58 49 51 58 54 47 49 52 58 58 51 54 58 50 50 50 49 58 58 51 52 52 52 51 51 52 37 52 32 58 51 58 51 51 51 58 51 37 51 37 27 51 40 41 37 41 51 51 32 58 53 53 42 58 58 50 58 50 54 46 50 53 41 50 49 50 39 36 39 39 50 58 58 46 34 53 41 52 41 49 52 50 53 39 53 58 39 50 38 51 36 12 58 58 58 37 53 52 51 58 30 40 50 53 33 53 42 37 32 32 38 36 50 39 52 39 58 31 52 30 33 39 37 42 53 53 52 31 32 42 39 35 54 50 49 38 52 42 29 47 39 38 35 27 54 17 6 35 37 52 41 29 25 49 26 18 35 40 31 54 30 47 35 37 37 35 45 40 40 30 39 54 54 49 54 47 41 30 40 35 40 33 31 54 29 33 40 46 47 44 39 29 32 38 24 28 47 53 40 37 39 24 21 29 41 41 52 49 49 34 26 32 31 52 33 32 29 33 28 27 22 30 31 22 17 36 24 18 19 25 7 40 28 37 37 36 23 32 32 26 29 41 38 36 31 25 28 12 9 10 8 9 31 35 29 28 31 32 33 31 24 18 15 34 30 28 31 22 31 31 35 26 27 15 21 28 29 45 33 32 36 31 21 31 42 34 33 33 38 22 36 25 33 32 12 9 6 9 14 33 34 24 31 26 38 36 29 32 31 31 8 12 6 13 31 22 41 37 32 24 28 46 15 22 26 32 13 41 10 28 18 12 34 16 41 28 28 26 27 23 27 9 26 7 21 10 26 39 8 29 20 26 31 41 24 44 13 25 31 32 24 20 19 23 9 9 15 29 18 38 32 25 10 21 11 5 20 8 10 18 16 10 20 41 13 31 22 24 23 12 9 25 28 26 16 29 32 34 27 17 6 20 25 15 7 11 17 27 19 17 19 9 21 8 14 9 31 43 43 48 26 30 14 13 33 22 24 19 28 23 27 34 28 14 10 6 9 8 19 17 17 11 27 11 27 14 34 19 14 13 13 14 23 13 15 20 18 7 3 3 25 18 9 18 18 12 16 21 28 9 12 20 4 13 16 10 29 19 11 12 9 6 14 12 11 15 19 20 12 12 5 6 13 8 8 11 19 10 3 7 6 16 23 7 9 9 15 15 11 4 6 5 4 15 17 14 6 5 3 1 2 3 5 9 12 20 10 8 5 14 10 16 11 16 15 23 6 6 5 13 7 5 5 9 4 4 15 7 7 4 14 14 5 11 6 7 8 5 4 5 4 23 10 9 4 1 9

Alignment Information

BAC End 1

BAC End 2

seq1: chr6_28557254_28558465
seq2: B6Ng01-340M01.b_45_1242

seq1  GAATTCTTTCCCAGAGTTATCCATTGTACACTCCCTAGATATGAAATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCAGAGTTATCCATTGTACACTCCCTAGATATGAAATATC  50

seq1  AATTTTACAAGCTGGCAAAATGGTATTTAATGGTGGCTGACAGGATAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACAAGCTGGCAAAATGGTATTTAATGGTGGCTGACAGGATAGTG  100

seq1  TTTAAGGACAATATATATTGGATACTTAAATTTTTCTATTATCTGACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGACAATATATATTGGATACTTAAATTTTTCTATTATCTGACTCT  150

seq1  TGGCACAGATCATTGAATTTAAGTTGTATTGAGATTGCAGATGTAGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAGATCATTGAATTTAAGTTGTATTGAGATTGCAGATGTAGCTGC  200

seq1  CTTAATAACCTCTGCTGTGCTGCCTGTTTATTTAGTCTCGGACCTTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAACCTCTGCTGTGCTGCCTGTTTATTTAGTCTCGGACCTTCCTA  250

seq1  AGCGTTTCTGCTTTCCAAGCATGCACAGAAGAAAATAAAACAGTTTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTTCTGCTTTCCAAGCATGCACAGAAGAAAATAAAACAGTTTCAGC  300

seq1  TTCTACCTTCATATCTCCTTGCATTAGGAAAGACATCTAAAAAATATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTTCATATCTCCTTGCATTAGGAAAGACATCTAAAAAATATCAG  350

seq1  GGACATTTTTGAGGATGCTTTTTCTGGCCTCAAGCATGGAGCCAGACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTTTGAGGATGCTTTTTCTGGCCTCAAGCATGGAGCCAGACCAG  400

seq1  TTTTATATGATTTGTTGGCATGAAGTTTTTGTTTCTGCTTTCCCTGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATGATTTGTTGGCATGAAGTTTTTGTTTCTGCTTTCCCTGCTTC  450

seq1  TGAGGCTTAACTTGTTGATAATACCTAGTGATTCAGGGTTTTGCCACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTAACTTGTTGATAATACCTAGTGATTCAGGGTTTTGCCACATG  500

seq1  GAAACTTAAAAAGTTGTGGGCTAAGTTTGGTAAATGTGGTGCTCAAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTAAAAAGTTGTGGGCTAAGTTTGGTAAATGTGGTGCTCAAATGC  550

seq1  TCGATTTCATGCTTCTCTCATTTTCCTTTGAATTTTAAATTGCTCTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATTTCATGCTTCTCTCATTTTCCTTTGAATTTTAAATTGCTCTTCAT  600

seq1  GTATGTTAGTTATATGCAGTTTCTTCTAAATGGCCTCTTGGATAATACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTAGTTATATGCAGTTTCTTCTAAATGGCCTCTTGGATAATACAT  650

seq1  TGTTCAGTTAGATAAGTAAATGAATGTCTGTGTTACTGAGCGTGACTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTTAGATAAGTAAATGAATGTCTGTGTTACTGAGCGTGACTCAT  700

seq1  TTAAAATCTCATTTGTTACAATGTCTTTGTCCACTGTCTGCAAATTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCTCATTTGTTACAATGTCTTTGTCCACTGTCTGCAAATTTTGT  750

seq1  GTCCCCTTGATCTGCAGCACCCCCAGCTTTTCAAAAAATTGAATAAGGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTTGATCTGCAGCACCCCCAGCTTTTCAAAAAATTGAATAAGGCG  800

seq1  TAGAGACCAGGATTTGGGGGGACAGCTTACCCTGAGGACTCTATCCGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCAGGATTTGGGGGGACAGCTTACCCTGAGGACTCTATCCGAAT  850

seq1  GCCTTTCCTTTGATCTCTTGTTGGTTTTTCTTTGATCTTTGGCTATATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCCTTTGATCTCTTGTTGGTTTTTCTTTGATCTTTGGCTATATTT  900

seq1  TTTGTAGTTGACTATGTGTGTGCACATATACATGTGATGTTTAAGAATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTGTAGTTGACTATGTGTGTGCACATATACATGTGATGTTTAAG-ATGG  949

seq1  AATATCTGAATCAAATCCCAAGGAAACTTGAAGTGACTAATTTGCTATGA  1000
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  AATATCTGAATCAAATCCCAAGG-AACTTG-AGTGACTAATTTGCTATGA  997

seq1  TACTGTACACACAACCTGTTGGGTTGACTGAATAAGTCACC-TCTGGTTG  1049
      |||||||||||| ||||||| |||||||||||||||||||| ||||| ||
seq2  TACTGTACACAC-ACCTGTT-GGTTGACTGAATAAGTCACCTTCTGG-TG  1044

seq1  GCATATATTTGCTTGTAATTTCTTCTCGTCTCGCAGTGAGGGAATGTCTG  1099
      |||||||||||||||| |||||||||||||||||| ||| ||||||||||
seq2  GCATATATTTGCTTGT-ATTTCTTCTCGTCTCGCA-TGA-GGAATGTCTG  1091

seq1  GGCG-CACCCTTTTCTCATC-ATTTTTA-TTCACTCTTTCTGCTCTTTGG  1146
      |||| ||||||||||||||| ||||||| ||||||||||||||   ||| 
seq2  GGCGCCACCCTTTTCTCATCAATTTTTATTTCACTCTTTCTGCCTCTTG-  1140

seq1  AACAATGTCTTACTCCTCTAAGGCCTCAACACTGTGAACTCTTGGGTTAG  1196
       |||||||||||||||| |||||||| ||| || ||||| ||||||  | 
seq2  -ACAATGTCTTACTCCTTTAAGGCCT-AAC-CT-TGAAC-CTTGGG--AT  1183

seq1  AGCGTTGGCGTGTGGT  1212
      ||||||||||| ||||
seq2  AGCGTTGGCGT-TGGT  1198

seq1: chr6_28689199_28690375
seq2: B6Ng01-340M01.g_68_1237 (reverse)

seq1  CTTATTTGGAAGAGCAGTCATGCTG-GATCT-AAGGTATCTGCCTTCTCC  48
      |||| || ||||||||||  ||||| ||||| |||||||||||| |  ||
seq2  CTTA-TTCGAAGAGCAGTACTGCTGAGATCTAAAGGTATCTGCCAT-ACC  48

seq1  TTGTTCCAGTGGTTAGCACTCAATTCAGACT-GTCCTTAGCTTGCAGGTT  97
       |||||  ||||| |||| |||  ||||||| ||||| |||||||||  |
seq2  CTGTTCAGGTGGTAAGCATTCA--TCAGACTGGTCCTAAGCTTGCAG--T  94

seq1  CCATTTGGAAGTTTGGTTTAGCTAATTGGGATGTATTC-AGATGAAGGTA  146
       |||||||||||| |  ||||||||||||||||||||| |||||||||||
seq2  TCATTTGGAAGTTCG--TTAGCTAATTGGGATGTATTCAAGATGAAGGTA  142

seq1  GAGAATTTTTTAACTATGAGAGAACCACAAATAAGAATCCAGCCCGTGTC  196
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGA--TTTTTAACTATGAGAGAACCACAAATAAGAATCCAGCCCGTGTC  190

seq1  TCTACTAATGTACAGAGGTAGAACCCAGGCCCAGACAACCAGTTCTCTGC  246
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTACTAATGTACAGAGGTAG-ACCCAGGCCCAGACAACCAGTTCTCTGC  239

seq1  TCTGACTTATGGGACACCTGAGTGATGTGATG-TGCCATCTAAGCCAACA  295
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTGAC-TATGGGACACCTGAGTGATGTGATGTTGCCATCTAAGCCAACA  288

seq1  GCATGAGGTGATGTAAGCCAGACGTCACTTAATGAGAGATTATTGATGGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGGTGATGTAAGCCAGACGTCACTTAATGAGAGATTATTGATGGC  338

seq1  CTACATTCAGCAGCTTTATAAAAACATGGTAGAATGCTGTTTTGTTCTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTCAGCAGCTTTATAAAAACATGGTAGAATGCTGTTTTGTTCTGA  388

seq1  TTGTTTTTCTGTGTGACTCTCTTCTATGTTTCCTTTATTCTAGTTAAATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTGTGTGACTCTCTTCTATGTTTCCTTTATTCTAGTTAAATA  438

seq1  TGCAGCTAACTAAAGTTTGCGTACACATACCAGACCCCTCACACACTCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTAACTAAAGTTTGCGTACACATACCAGACCCCTCACACACTCTT  488

seq1  ACTGTGAAATATTAATAACTAGCCGGGAGATGGCTAGTTGGCTTCAGCAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAAATATTAATAACTAGCCGGGAGATGGCTAGTTGGCTTCAGCAT  538

seq1  TGTACGTGCTTTCTGGAAGCACTAGAGCTTGAGTTCGTTCCCAGGTGTTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGTGCTTTCTGGAAGCACTAGAGCTTGAGTTCGTTCCCAGGTGTTC  588

seq1  TCCCTACCAGAGTCCCGTTTACTTCCAGAGAATAGCATGCTGTACAGTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACCAGAGTCCCGTTTACTTCCAGAGAATAGCATGCTGTACAGTTG  638

seq1  ACTCCTCACAGACAAACCAGAAGCTCATTCCAAGAATTAACCCACTGTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCACAGACAAACCAGAAGCTCATTCCAAGAATTAACCCACTGTGT  688

seq1  GGAATGGAGGAAGAGTGTGGAGTGATGAGTGTGGTTGTGATTTGTCTTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGAGGAAGAGTGTGGAGTGATGAGTGTGGTTGTGATTTGTCTTCT  738

seq1  ATGCCATGGCAGAAGTAATTCGCCTATTCTGTACAGCCCTACGAAGATTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGGCAGAAGTAATTCGCCTATTCTGTACAGCCCTACGAAGATTG  788

seq1  CTAACTACGGCAGTGAACAATCACAATAGTTTTTAACGTGCAAAAACATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTACGGCAGTGAACAATCACAATAGTTTTTAACGTGCAAAAACATG  838

seq1  TTTGCTTCAATGTCCTTAGCTATTAGTTCTGATCTCCATTCTTATCTGTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCAATGTCCTTAGCTATTAGTTCTGATCTCCATTCTTATCTGTG  888

seq1  TCTGCCCCCTTGTTTCACTGATTATGCATTATGATTAGTTGGCCCTAAGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCCTTGTTTCACTGATTATGCATTATGATTAGTTGGCCCTAAGG  938

seq1  GGCCAGCAACACAGCCAGTTCATGCCGGGGAACAGACATTCTAATGTAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCAACACAGCCAGTTCATGCCGGGGAACAGACATTCTAATGTAGG  988

seq1  GAAAATATCTGTGGTGCTTCCAAGAAGTCTCCTTGGGCCCGACGGTTTCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATCTGTGGTGCTTCCAAGAAGTCTCCTTGGGCCCGACGGTTTCT  1038

seq1  TCATCATTGAGCTTCCCTTCCCAGTGCTGATAGAGTATGTCTGTATTAAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTGAGCTTCCCTTCCCAGTGCTGATAGAGTATGTCTGTATTAAC  1088

seq1  AGGGTCACCTATGTGTGTAATTTGTCTACCTCAAGGTTATTCTTTGATGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCACCTATGTGTGTAATTTGTCTACCTCAAGGTTATTCTTTGATGT  1138

seq1  TAATGGAAGAGTGATTGTGGTGATGGGAATTC  1177
      ||||||||||||||||||||||||||||||||
seq2  TAATGGAAGAGTGATTGTGGTGATGGGAATTC  1170

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