BAC Information

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BAC

Clone NameB6Ng01-340N16
Chromosome6 (Build37)
Map Location 6,466,070 - 6,467,163
singlet/doubletsinglet
Overlap genenone
Upstream geneDync1i1, Slc25a13, EG667462, EG667468, LOC667471, LOC100040096
Downstream geneShfm1, LOC545826, Dlx6as, Dlx5, Acn9, EG667500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340N16.bB6Ng01-340N16.g
ACCGA124421GA124422
length1,1461,094
definitionB6Ng01-340N16.b B6Ng01-340N16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttccctatatcctcaccagcatctgttctcacatgcctgatga
tagccattctgactggggtggagtgctgtctcagaataattttaatttgc
atttccatacttgctatagacgttgaagatttaaaaaaaattattagtca
tttgtggaattgttgtttgtttgttttgagaattgccaattcatttcatt
attccagttgttgattggcagttttgttaggaggtatttaatttttatag
ctccttacaaattctggtatccctctgccttaattagtacctgcaaggat
tttatcccatttgtaggctgtttgctctactgctagattttgggtttggt
tggttgggacatttttgggtgtgagacttatgcagaagtttttaaatttc
gtataatcccatttgttgattcctagggctgtttcctctgctgttggagt
tctcagaaaactgtttcctgtacctaagtcttgacctgcactatctgttt
tcctctagtcagggtttcaggttgtacactaaggactctgatgcactctg
aatcattttttttttcagtgtaaagggtacagatctaattccatccagct
gcaggtggccacccaatcttggaagcaccatgcatcatcactgaatgatt
tgatacatgtgtccatatcatcgtctgttttcttctgagtactctactct
gtcccacctattcttgtctacctgtcacctattatgcctttaccaggccg
tgtttgtcaatataactctatagcattttcctctaaaataacaaaacaac
aacaacaaaagccaacaacaacaacaacaacaacaaaataacaaaacaaa
aagccactgggttattaatactcaaattgtgtggaagagaaaagatttta
ttttattttatttagaattcaaaatgaagtagtgatttttgtctctcaat
agacatccctaaatgcattgataagtaagctatgggctgagaaaaatatt
tgagctcatatgtgttaaggaaaggtcatgtgtcgagttataaacaaaag
acacttccaaaatagttaacaaaagagcagcttaaatgaacagaactctg
aagtctcttcctaggaagaaaacactcttgttaatggcactcatag
gaattctggacactggtgttagttttcatagagacagaaaaaaagaagga
agggagagaggaagaactacactcaggaagtatccacagatggagtgcac
ttgcagagagatgctaaatccgagaatgatcgtcagatttccagtgtcct
aacatggctcttctaatgtgtgactgctggccaagtacaggattctctct
attaaagaagtctggcatccatctctaaaaaggaatctgcttccatccaa
agcagatttatcttccatcttctgtgtgcacagcacagcaatagcaactg
gcttatctgtctattttacagagcacttacatcacgttaggacttacaca
tatacactgtcctcatgaaatactgaatggacacccaaggaggacagaga
agaaacaacacattcggggtatgagtaggcttctctgagagaagatactg
agatggaagaacatactgagatggagttcgttccacactgaggaagagtg
aaggaaggaccagtgagcagaaggcaaactttaatttgtttttgcacgtc
attttttaaaaaaatgaatcagggtagatacaacaggtgtagcaaacaaa
gccttagccttccctgttgagaactgagacaatgaaacacattggctgcc
agagcctcctcgaattggccaaaaaatggttgagtgcttttactcctgcc
tggctgaattgctgaatatggaccatccttaaaagggttctggacattga
agctctttgtctgacaccatccatttgtaaggctctttgggagtttcaga
ctaaagtactcatttaggaaactgaacaaaaacttcagcagagcaagcta
cagttggagtcaagaaggagttcaaaactgtgggatcatctagcttaaca
tgaagatggttcaataagctacagttcctgactgtgctcctcactgtgtc
cgatgtggtttgcacagaatgccagttcatgaaatgtaatatattagttc
cataaaactatgtcttaagatcaacaatttttgaaaattatgattggttt
gagtggggaacaaaaatagccagttagtctactaaccactttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_6466070_6467163
seq2: B6Ng01-340N16.g_68_1161

seq1  GAATTCTGGACACTGGTGTTAGTTTTCATAGAGACAGAAAAAAAGAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGACACTGGTGTTAGTTTTCATAGAGACAGAAAAAAAGAAGGA  50

seq1  AGGGAGAGAGGAAGAACTACACTCAGGAAGTATCCACAGATGGAGTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAGGAAGAACTACACTCAGGAAGTATCCACAGATGGAGTGCAC  100

seq1  TTGCAGAGAGATGCTAAATCCGAGAATGATCGTCAGATTTCCAGTGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGAGATGCTAAATCCGAGAATGATCGTCAGATTTCCAGTGTCCT  150

seq1  AACATGGCTCTTCTAATGTGTGACTGCTGGCCAAGTACAGGATTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCTCTTCTAATGTGTGACTGCTGGCCAAGTACAGGATTCTCTCT  200

seq1  ATTAAAGAAGTCTGGCATCCATCTCTAAAAAGGAATCTGCTTCCATCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGAAGTCTGGCATCCATCTCTAAAAAGGAATCTGCTTCCATCCAA  250

seq1  AGCAGATTTATCTTCCATCTTCTGTGTGCACAGCACAGCAATAGCAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATTTATCTTCCATCTTCTGTGTGCACAGCACAGCAATAGCAACTG  300

seq1  GCTTATCTGTCTATTTTACAGAGCACTTACATCACGTTAGGACTTACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCTGTCTATTTTACAGAGCACTTACATCACGTTAGGACTTACACA  350

seq1  TATACACTGTCCTCATGAAATACTGAATGGACACCCAAGGAGGACAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTGTCCTCATGAAATACTGAATGGACACCCAAGGAGGACAGAGA  400

seq1  AGAAACAACACATTCGGGGTATGAGTAGGCTTCTCTGAGAGAAGATACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAACACATTCGGGGTATGAGTAGGCTTCTCTGAGAGAAGATACTG  450

seq1  AGATGGAAGAACATACTGAGATGGAGTTCGTTCCACACTGAGGAAGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAGAACATACTGAGATGGAGTTCGTTCCACACTGAGGAAGAGTG  500

seq1  AAGGAAGGACCAGTGAGCAGAAGGCAAACTTTAATTTGTTTTTGCACGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGACCAGTGAGCAGAAGGCAAACTTTAATTTGTTTTTGCACGTC  550

seq1  ATTTTTTAAAAAAATGAATCAGGGTAGATACAACAGGTGTAGCAAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAAAAAATGAATCAGGGTAGATACAACAGGTGTAGCAAACAAA  600

seq1  GCCTTAGCCTTCCCTGTTGAGAACTGAGACAATGAAACACATTGGCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGCCTTCCCTGTTGAGAACTGAGACAATGAAACACATTGGCTGCC  650

seq1  AGAGCCTCCTCGAATTGGCCAAAAAATGGTTGAGTGCTTTTACTCCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCCTCGAATTGGCCAAAAAATGGTTGAGTGCTTTTACTCCTGCC  700

seq1  TGGCTGAATTGCTGAATATGGACCATCCTTAAAAGGGTTCTGGACATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAATTGCTGAATATGGACCATCCTTAAAAGGGTTCTGGACATTGA  750

seq1  AGCTCTTTGTCTGACACCATCCATTTGTAAGGCTCTTTGGGAGTTTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTGTCTGACACCATCCATTTGTAAGGCTCTTTGGGAGTTTCAGA  800

seq1  CTAAAGTACTCATTTAGGAAACTGAACAAAAACTTCAGCAGAGCAAGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTACTCATTTAGGAAACTGAACAAAAACTTCAGCAGAGCAAGCTA  850

seq1  CAG-TGGAGTCAAGAAGGAGTTCAAAACTGTGGGATCATCTAGCTTAACA  899
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAGTCAAGAAGGAGTTCAAAACTGTGGGATCATCTAGCTTAACA  900

seq1  TGAAGATGGTTC-ATAAGCTACAGTTCCTGACTGTGCTCCTCACTGTGTC  948
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGGTTCAATAAGCTACAGTTCCTGACTGTGCTCCTCACTGTGTC  950

seq1  CGATGTGGTTTGCACAGAATGCCAGTTCCATGAAATGTTAATAATATTAG  998
      ||||||||||||||||||||||||||| ||||||||| |||| |||||||
seq2  CGATGTGGTTTGCACAGAATGCCAGTT-CATGAAATG-TAAT-ATATTAG  997

seq1  TTTCCATAAAACTATGTCTTAAGATCAAACAATTTTTGAAAATTATGATG  1048
       ||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  -TTCCATAAAACTATGTCTTAAGATC-AACAATTTTTGAAAATTATGATT  1045

seq1  GTTTTGAGT-GGGAAC-AAAATAGCCAGTTAGTCTAC-AAACACTTTTA  1094
      | ||||||| |||||| |||||||||||||||||||| || ||||||||
seq2  GGTTTGAGTGGGGAACAAAAATAGCCAGTTAGTCTACTAACCACTTTTA  1094