BAC Information

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BAC

Clone NameB6Ng01-340O14
Chromosome6 (Build37)
Map Location 80,556,187 - 80,557,264
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043392, Lrrtm4
Downstream geneLOC100043390, LOC100042991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340O14.b
ACCGA124459
length1,073
definitionB6Ng01-340O14.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggctttgccgtgcttgtattttcgttatataatatacaccaag
attaaggatctggttatctatttaaacatttttttggtaactttcatcta
gattcagcatggaatgtttctttagtaaatgagggcaccccatcaaaaaa
aattgaatgctaatgtattttgccaactaaaacatactttatctgttttc
cctcaaattattccctttttcttgacttgcaggaggcaggtaaatttgaa
tataaacatgaattatgcaatgggggtaatgtatctatctttcataagaa
actaagcgcgcttatgtgaagacacagccaccacaggctccaaatctcat
acataccgtttaatcaaaaatcagtaagatattttaaatgatatccatcg
gataacataaatccctttctatataatgtacaaaaataaagggatgatta
atagtattattataaatttcaaatctcatgattgagaactgctgaattta
cttatggttcaatatgtaaatgtagtaagattaaaattattcaatgactc
cttataacttgaggcaattcattataacttcctccaaatgctattgtaat
gttattaatcataatgaattcctttgaaatccagtagagcggtaatatat
tattacatatatgtttccactctaaattagctccagtgactgaaccaact
aagaactattattaagttactatataacatctgcaaaatcataatcagac
ccggatattgattgaaaatgaagtcactctgaccagctttattagaaaat
cacatatatgggaaatatgagacaccctaaaataaatgtcgctaatagaa
taagacctatttaaatgtccgatattcataggtcctacgtacttcatgag
aaaaagatttatattgcaaaaccattattcttttacttgacacatttcga
tgggactcagtgctgcagactgcagacatcttcagtctaatagtggcact
aggattatggggacatcagaccatgacccgggatggacttagtcatcatc
actcaatatgagctcgtttcttg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_80556187_80557264
seq2: B6Ng01-340O14.b_44_1116

seq1  GAATTCTGGCTTTGCCATGCTTGTATTTTCACTATATAATATACACCAAG  50
      |||||||||||||||| |||||||||||||  ||||||||||||||||||
seq2  GAATTCTGGCTTTGCCGTGCTTGTATTTTCGTTATATAATATACACCAAG  50

seq1  ATTAAGGATCTATTTATCTATTTAAACACATTTTTAGTAACTTTCATCTA  100
      |||||||||||  |||||||||||||||  ||||| ||||||||||||||
seq2  ATTAAGGATCTGGTTATCTATTTAAACATTTTTTTGGTAACTTTCATCTA  100

seq1  GATTCAGCATGGAATGTTTCTTTAGTAAATGAGGGCACCCAAGCAAAAAG  150
      |||||||||||||||||||||||||||||||||||||||| | |||||| 
seq2  GATTCAGCATGGAATGTTTCTTTAGTAAATGAGGGCACCCCATCAAAAAA  150

seq1  AATTGAATGCTAATGTATTTTGCCAACTAAAACATACTTTATCTGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATGCTAATGTATTTTGCCAACTAAAACATACTTTATCTGTTTTC  200

seq1  CCTCAAATTATTCCCTTTTTCTTGACTTGCAGGAGGCAGGTAAATTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATTATTCCCTTTTTCTTGACTTGCAGGAGGCAGGTAAATTTGAA  250

seq1  TATAAACATGAATTATGCAATGGGGGTAATGTATCTATCAATCATAAGAA  300
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  TATAAACATGAATTATGCAATGGGGGTAATGTATCTATCTTTCATAAGAA  300

seq1  ACGAAGCAGGCTTATGTGAAGACACAGCCACCACAGGCTCCAAATCTCAT  350
      || ||||  |||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCGCGCTTATGTGAAGACACAGCCACCACAGGCTCCAAATCTCAT  350

seq1  ACATACCGTTTAATCAAAAATCAGTAAGATATTTTAAATAAAATCCATCA  400
      ||||||||||||||||||||||||||||||||||||||| | ||||||| 
seq2  ACATACCGTTTAATCAAAAATCAGTAAGATATTTTAAATGATATCCATCG  400

seq1  AATAACATAAATCCCTTTCTATATAATGTACAAAAATAAAGGGATGATTA  450
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACATAAATCCCTTTCTATATAATGTACAAAAATAAAGGGATGATTA  450

seq1  ATAGTATTATTATAAATTTCAAATCTCATTATTGAGAACTGCTGAATTTA  500
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATAGTATTATTATAAATTTCAAATCTCATGATTGAGAACTGCTGAATTTA  500

seq1  CTTATGGTTCAATATGTAAATGTAGTAAGATTAAAATTATTCAATGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTATGGTTCAATATGTAAATGTAGTAAGATTAAAATTATTCAATGACTC  550

seq1  CTTATAACTTGTGGCAATTCATTATAACTTCCTCAAAATGCTATTGTAAT  600
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  CTTATAACTTGAGGCAATTCATTATAACTTCCTCCAAATGCTATTGTAAT  600

seq1  GTTATTAATCATAATGAATTCCTTTGAAATCCAGTAGAGCGGTAATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAATCATAATGAATTCCTTTGAAATCCAGTAGAGCGGTAATATAT  650

seq1  TATTACATATATGTTTCCACTCTAAATTAGCTCCAGTGACTTAACCAACT  700
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATTACATATATGTTTCCACTCTAAATTAGCTCCAGTGACTGAACCAACT  700

seq1  AAGAACTATTATTAAGTTACTATATAACACCTGCAAAATCATAATCAAAC  750
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  AAGAACTATTATTAAGTTACTATATAACATCTGCAAAATCATAATCAGAC  750

seq1  CCAGAAATTGATTGAAAATGAAGTCACTCTGACCAGCTTTATTAGAAAAT  800
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATATTGATTGAAAATGAAGTCACTCTGACCAGCTTTATTAGAAAAT  800

seq1  CAGATAAATGGGAAATATGAGACACCCTAAAATAAAATGTCGCTAAATAG  850
      || ||| |||||||||||||||||||||||||| |||||||||| |||||
seq2  CACATATATGGGAAATATGAGACACCCTAAAAT-AAATGTCGCT-AATAG  848

seq1  TATAAAA--TTATTAAATTTCCTTTATTCATAGGTCCAACAGACTTCAAT  898
       |||| |  |  |||||| |||  ||||||||||||| ||  ||||| ||
seq2  AATAAGACCTATTTAAATGTCCGATATTCATAGGTCCTACGTACTTC-AT  897

seq1  GAGAAAAAGA-TTAAAATGCAAAACCATTAGTC-TTTACTTGACAAAATT  946
      |||||||||| ||| | ||||||||||||| || ||||||||||| | ||
seq2  GAGAAAAAGATTTATATTGCAAAACCATTATTCTTTTACTTGACACATTT  947

seq1  CAAATGGACTCAGTGTTGCAGACTGCAGACATCTTCAGTCTAATTAAGTG  996
      | |  |||||||||| ||||||||||||||||||||||||||||  ||||
seq2  CGATGGGACTCAGTGCTGCAGACTGCAGACATCTTCAGTCTAAT--AGTG  995

seq1  GCAAATAGGATTTATGGGGACAATAAGACCATGGCCCCAGTATGGA-TTT  1045
      || | ||||| |||||||||| || ||||||| | ||| | ||||| || 
seq2  GC-ACTAGGA-TTATGGGGAC-ATCAGACCAT-GACCCGGGATGGACTTA  1041

seq1  GTCATCATCACTCAATATAAAGCTCGTTTCTTG  1078
      ||||||||||||||||||  |||||||||||||
seq2  GTCATCATCACTCAATAT-GAGCTCGTTTCTTG  1073