BAC Information

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BAC

Clone NameB6Ng01-341H24
Chromosome6 (Build37)
Map Location 80,213,112 - 80,319,819
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC621815, LOC100043392, Lrrtm4
Downstream geneLOC100043390, LOC100042991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341H24.bB6Ng01-341H24.g
ACCGA124864GA124865
length6371,099
definitionB6Ng01-341H24.b B6Ng01-341H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,213,112 - 80,213,745)(80,318,721 - 80,319,819)
sequence
gaattcaagaagtccaagtaatttaagcaaaatggaccatggtaccctta
aataatgtagatatttatttagatatttttgtaaaaaataatataaaaca
agccaaatttaaaagcttaaattcacaatgagaatgaaagcagatagctt
ccataaaatataaatgtttgccaaatattttttgtttatgcctattttag
gtccactaaccggcttaaatacacatacatgtatgaatgcaataactatt
agtaaaaacaaaacccaggagtttgaaagcaagtggggagaattatatag
gaggatttagagagagtaaagggaagggagaaatgttgtgataacattat
aatcataaaaagaaaaaagaaaatataaatttatatgtaagtatatattt
tgtttatacatatacatgtatagaaatgcatacacacataaaatatattg
ttgtgatccctgtgcatatgtgcatatgcctgcttgtatacatacagata
tatatatatgtccccttttgttattgtatgtatgtaggtcaggaacaacc
ttggttgtcatttctgtagaaaactatgtcatccagaatctcactatcac
ccaacatagtattggcgttaggatatgttatctgatt

gaattcagggtgttgactttgaaactttaaagattctgtttattttaaat
gatttaaagaaatgaagaaaatagcatttttcttatattcctaatatatc
agttttatatttttgtttttatattcttatataatatagtcttatattat
tcccttatctattcttatgtgcatattattacaacttaatcatgtaactc
tatgatcaagtgttgcacttgtctgtgacttaacaaaaaaattaaaaaca
aaagttcgtgtatagatgtatgtgtatgcatgcttacagaatacataact
ggcacacacatacatttataggtatacatttcttctaaaaacacatcctt
atttaatatctgaaacagaacagggcttaagtttctagaatttcatgaaa
aacatgaatatttactttgtaaaatatttctatcacatgcccatgttttt
acagtaccttatagagacatttattggcaagaatcatttacaaggaaaaa
atacgataaaatatactttcattctgttactttgttttattcctgtcaag
ttacagctcaaggttacaaaggtgaatacttagagtcctcaatgcagtct
cagaatgcagaaggaggaaagttgaaatgctttcgctctgtcacctattg
ctagaaggctgttataatttaatattatgactcttggtttgtatattgtt
aaatgggtaaagtatacatacatataacctgatgttatttgtgaatgcca
tctagaacatatgaattttggcatttaagccttacttcccacaactgtct
ttcctccacaacatggaaatctaaatcaagtgtatgcaaagtggaatgtt
cttcgttttcaggaagagtgcaaatcaccatatctgtgaaaacattcaca
gccctttgtctttttcttgaagcaatgacttaaaggaaaactgtctttca
tgttgtgtgacttagattcatgactactgaacagatgggaaaagagaaac
atcttaaaatagactagaaaatagggatgatacagaacaagttgaaaact
ctcacaacacggagttctgtgtggtctgtgattacttgaatgttagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_80213112_80213745
seq2: B6Ng01-341H24.b_48_684

seq1  GAATTCAAGAAGTCCAAGTAATTTAAGCAAAATGGACCATGGTACCCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAGTCCAAGTAATTTAAGCAAAATGGACCATGGTACCCTTA  50

seq1  AATAATGTAGATATTTATTTAGATATTTTTGTAAAAAATAATATAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTAGATATTTATTTAGATATTTTTGTAAAAAATAATATAAAACA  100

seq1  AGCCAAATTTAAAAGCTTAAATTCACAATGAGAATGAAAGCAGATAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAATTTAAAAGCTTAAATTCACAATGAGAATGAAAGCAGATAGCTT  150

seq1  CCATAAAATATAAATGTTTGCCAAATATTTTTTGTTTATGCCTATTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAATATAAATGTTTGCCAAATATTTTTTGTTTATGCCTATTTTAG  200

seq1  GTCCACTAACCGGCTTAAATACACATACATGTATGAATGCAATAACTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTAACCGGCTTAAATACACATACATGTATGAATGCAATAACTATT  250

seq1  AGTAAAAACAAAACCCAGGAGTTTGAAAGCAAGTGGGGAGAATTATATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAACAAAACCCAGGAGTTTGAAAGCAAGTGGGGAGAATTATATAG  300

seq1  GAGGATTTAGAGAGAGTAAAGGGAAGGGAGAAATGTTGTGATAACATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTAGAGAGAGTAAAGGGAAGGGAGAAATGTTGTGATAACATTAT  350

seq1  AATCATAAAAAGAAAAAAGAAAATATAAATTTATATGTAAGTATATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAAAAAGAAAAAAGAAAATATAAATTTATATGTAAGTATATATTT  400

seq1  TGTTTATACATATACATGTATAGAAATGCATACACACATAAAATATATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATACATATACATGTATAGAAATGCATACACACATAAAATATATTG  450

seq1  TTGTGATCCCTGTGCATATGTGCATATGCCTGCTTGTATACATACAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATCCCTGTGCATATGTGCATATGCCTGCTTGTATACATACAGATA  500

seq1  TATATATATGTCCCCTTTTGTTATTGTATGTATGTAGGTCAGGAACAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATGTCCCCTTTTGTTATTGTATGTATGTAGGTCAGGAACAACC  550

seq1  TTGGTTGTCA-TTCTGTAG-AAACTATGTCATCCAGAATCTCACTATCAC  598
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  TTGGTTGTCATTTCTGTAGAAAACTATGTCATCCAGAATCTCACTATCAC  600

seq1  CCAACATAGTATTGGCG-TAGGATATGTTATCTGATT  634
      ||||||||||||||||| |||||||||||||||||||
seq2  CCAACATAGTATTGGCGTTAGGATATGTTATCTGATT  637


seq1: chr6_80318721_80319819
seq2: B6Ng01-341H24.g_67_1165 (reverse)

seq1  AGTCTAACAATCAAGGTTATCACAGACCACAACAG-ACT-CGTG-TGTGA  47
      ||||||||| |||| || |||||||||||| |||| ||| |||| |||| 
seq2  AGTCTAACATTCAA-GTAATCACAGACCAC-ACAGAACTCCGTGTTGTG-  47

seq1  AGAGTTTTTCACTTG-TCTGTATCATCCCTATTTTCTAGTTCTATTTT-A  95
      ||||||||  ||||| ||||||||||||||||||||||| |||||||| |
seq2  AGAGTTTTCAACTTGTTCTGTATCATCCCTATTTTCTAG-TCTATTTTAA  96

seq1  GATGTTTCTTCTTTTCCCATCTTGTTCAGTAGGTCATTGATTCTAAGTCA  145
      |||||||| |||||||||||| ||||||||| |||| ||| |||||||||
seq2  GATGTTTC-TCTTTTCCCATC-TGTTCAGTA-GTCA-TGAATCTAAGTCA  142

seq1  CAACAACATGAAAGACAGTTTTCC-TTAAGTCATTGCTTCAAG-AAAAGA  193
      | |||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  C-ACAACATGAAAGACAGTTTTCCTTTAAGTCATTGCTTCAAGAAAAAGA  191

seq1  CAAA-GGCTGTGAATGTTTTCACAGATATGGTGATTTGCACTCTTCCTGA  242
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGCTGTGAATGTTTTCACAGATATGGTGATTTGCACTCTTCCTGA  241

seq1  AAACGAAGAACATTCCACTTTGCATACACTTGATTTAGA-TTCCATGTTG  291
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAACGAAGAACATTCCACTTTGCATACACTTGATTTAGATTTCCATGTTG  291

seq1  TGGAGGAAAGACAGTTGTGGGAAGTAAGGCTTAAATGCCAAAATTCATAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAAGACAGTTGTGGGAAGTAAGGCTTAAATGCCAAAATTCATAT  341

seq1  GTTCTAGATGGCATTCACAAATAACATCAGGTTATATGTATGTATACTTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGATGGCATTCACAAATAACATCAGGTTATATGTATGTATACTTT  391

seq1  ACCCATTTAACAATATACAAACCAAGAGTCATAATATTAAATTATAACAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTAACAATATACAAACCAAGAGTCATAATATTAAATTATAACAG  441

seq1  CCTTCTAGCAATAGGTGACAGAGCGAAAGCATTTCAACTTTCCTCCTTCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAGCAATAGGTGACAGAGCGAAAGCATTTCAACTTTCCTCCTTCT  491

seq1  GCATTCTGAGACTGCATTGAGGACTCTAAGTATTCACCTTTGTAACCTTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTGAGACTGCATTGAGGACTCTAAGTATTCACCTTTGTAACCTTG  541

seq1  AGCTGTAACTTGACAGGAATAAAACAAAGTAACAGAATGAAAGTATATTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAACTTGACAGGAATAAAACAAAGTAACAGAATGAAAGTATATTT  591

seq1  TATCGTATTTTTTCCTTGTAAATGATTCTTGCCAATAAATGTCTCTATAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGTATTTTTTCCTTGTAAATGATTCTTGCCAATAAATGTCTCTATAA  641

seq1  GGTACTGTAAAAACATGGGCATGTGATAGAAATATTTTACAAAGTAAATA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGTAAAAACATGGGCATGTGATAGAAATATTTTACAAAGTAAATA  691

seq1  TTCATGTTTTTCATGAAATTCTAGAAACTTAAGCCCTGTTCTGTTTCAGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTTTTCATGAAATTCTAGAAACTTAAGCCCTGTTCTGTTTCAGA  741

seq1  TATTAAATAAGGATGTGTTTTTAGAAGAAATGTATACCTATAAATGTATG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATAAGGATGTGTTTTTAGAAGAAATGTATACCTATAAATGTATG  791

seq1  TGTGTGCCAGTTATGTATTCTGTAAGCATGCATACACATACATCTATACA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCAGTTATGTATTCTGTAAGCATGCATACACATACATCTATACA  841

seq1  CGAACTTTTGTTTTTAATTTTTTTGTTAAGTCACAGACAAGTGCAACACT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTTTTGTTTTTAATTTTTTTGTTAAGTCACAGACAAGTGCAACACT  891

seq1  TGATCATAGAGTTACATGATTAAGTTGTAATAATATGCACATAAGAATAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATAGAGTTACATGATTAAGTTGTAATAATATGCACATAAGAATAG  941

seq1  ATAAGGGAATAATATAAGACTATATTATATAAGAATATAAAAACAAAAAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGAATAATATAAGACTATATTATATAAGAATATAAAAACAAAAAT  991

seq1  ATAAAACTGATATATTAGGAATATAAGAAAAATGCTATTTTCTTCATTTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTGATATATTAGGAATATAAGAAAAATGCTATTTTCTTCATTTC  1041

seq1  TTTAAATCATTTAAAATAAACAGAATCTTTAAAGTTTCAAAGTCAACACC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCATTTAAAATAAACAGAATCTTTAAAGTTTCAAAGTCAACACC  1091

seq1  CTGAATTC  1099
      ||||||||
seq2  CTGAATTC  1099


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