BAC Information

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BAC

Clone NameB6Ng01-341J20
Chromosome6 (Build37)
Map Location 9,509,322 - 9,510,301
singlet/doubletsinglet
Overlap genenone
Upstream geneGlcci1, Ica1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341J20.bB6Ng01-341J20.g
ACCGA124946GA124947
length9831,208
definitionB6Ng01-341J20.b B6Ng01-341J20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattaaaaatagaaagtctgaagttgaagaatataacgagggtaa
taaaagatcagtagagagtttcaagagcacactcaatcaagctgcagaat
tcaaagtttcaaacagatgcttgaatcaacaagaaaaaagagagagagta
taaaagcctgtgaagtaattttatggaatatatttggcatcatcaagtga
aatattaaatatttttttaaatatcaaggaaaagagtagttattaaaaat
ttatttaatcaaatactgggaagaagaagatggacataataaagacataa
gctcatcactagaatccttgggaaagaaagtgaagatagataaatgaaag
gtatcttataaagtaggtaattatggaaaataacttttcagcagcaagga
ttggacatatgtgtaattagactcaaaagaaaagattcactgtctagtcc
aggggattcatccccaacagcgaagtcttcatctccaaatatagagtgag
taggacttcagagaattaaaaaccaagatttaagacaaagagatgctagt
tcgtattgttgttcctcatatagggctgcagaccccttcagcaccttggg
tactttctctagctccttcagttgggaccccatgttccatctaatagatg
actgtgagcatccacttctgtatttgccaggcactgatataacctcacag
gagacagctatatcagagtccggtcagcaaaatcttgtcgggtttgatgg
ttgtttatgggatggattcctgggtagggcagtctctggatggtccttca
ttcagtctcagctccgaatttggccctgaaactccttccgattgtatttt
gttcccacttctaagaaggaacgaagtatctacaccgtgctcgtgtctct
agttgcatatgtagcagaggattgcctaatctgccatcaatggggaggag
aggcccgttgttttgggaagattctattgccca

gaattcctctaaatttctctccatttaatttgatgtgggctattagcttt
ttgtatattccctttactgtgcttatatatgcatcttgtattcctgatct
ctaatttgtataacatgatggggtgttgaattttgtcaaatactttttcc
agcatctagtgagatgatcatatgtgttttatttttaatttgtttataag
ttgtattatgctatatccactccagtagtcacctgtgtgacagacttagg
aacctggacgccatcctgaggtgaaaagttcatgggaacttagtttcctg
gacccgtggcatcctgtaataatgaatgctccaaatctgttcttgcttta
gtcagtaaacagatttgtgttttcccttaatattgctttattataagtgc
ctttaaggattgattttgacatatagctaagttagattcctcaccagtcc
taggcagtccttgagctgaccatgggcctggaattcagtaagaatgttgc
ctattcagtgacatttagaattgcctctagtattgtaagagagatagtga
aagaaatcaggcattactatctactacctagagttagaaatctcagagca
agcttagcaagtatacttagaatcttcattacaatcaggtatggcagact
acattacttattagtagaaagtacacacacacacacacacacacacacac
acacaaaatcacttagaataatagcagagctactcccatatgcaggaatt
tacacttatctaggaagaaaggacggttgtcttctaaggaggaaccagag
tagatacttagaactatagatagctaagttacaccccatacacagggaat
ttataatgacctaggggggaaaggtgggactatacaatagactagaatta
gaactatgaacagggtgtgaagctgaccttaggtgggggctgcttgtgat
cacaattgataacattgatttatccagttggtctgggctaggctttttaa
gcatgcattcttctgttttggttgtaaaaagtaaatttgcatcagattaa
ctcaatgtaccctttgaaatggcattgatgtatcactaacttctttgttc
ccggaaattgaatggactgaatgactacatggacaaaattacatcgaaat
aaccatacttcctgggtgttaggtactcgtgtgcagttgctatctccaca
gtaccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9509322_9510301
seq2: B6Ng01-341J20.b_49_1030 (reverse)

seq1  GGGC-ATAGAATCTTCCCAAAACCACGGGCCTCTCCT-CCCATTGATGGC  48
      |||| |||||||||||||||||| ||||||||||||| ||||||||||||
seq2  GGGCAATAGAATCTTCCCAAAACAACGGGCCTCTCCTCCCCATTGATGGC  50

seq1  AGATTAGGCAATCCTCTGCTACATATGCAACTAGAGACACGAGCACGGTG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGGCAATCCTCTGCTACATATGCAACTAGAGACACGAGCACGGTG  100

seq1  TAGATACTTCGTTCCTTCTTAGAAGTGGGAACAAAATACAATCGGAAGGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACTTCGTTCCTTCTTAGAAGTGGGAACAAAATACAATCGGAAGGA  150

seq1  GTTTCAGGGCCAAATTCGGAGCTGAGACTGAATGAAGGACCATCCAGAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGGCCAAATTCGGAGCTGAGACTGAATGAAGGACCATCCAGAGA  200

seq1  CTGCCCTACCCAGGAATCCATCCCATAAACAACCATCAAACCCGACAAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTACCCAGGAATCCATCCCATAAACAACCATCAAACCCGACAAGA  250

seq1  TTTTGCTGACCGGACTCTGATATAGCTGTCTCCTGTGAGGTTATATCAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGACCGGACTCTGATATAGCTGTCTCCTGTGAGGTTATATCAGT  300

seq1  GCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATTAGATGGAACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATTAGATGGAACA  350

seq1  TGGGGTCCCAACTGAAGGAGCTAGAGAAAGTACCCAAGGTGCTGAAGGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCCCAACTGAAGGAGCTAGAGAAAGTACCCAAGGTGCTGAAGGGG  400

seq1  TCTGCAGCCCTATATGAGGAACAACAATACGAACTAGCATCTCTTTGTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCCCTATATGAGGAACAACAATACGAACTAGCATCTCTTTGTCT  450

seq1  TAAATCTTGGTTTTTAATTCTCTGAAGTCCTACTCACTCTATATTTGGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTGGTTTTTAATTCTCTGAAGTCCTACTCACTCTATATTTGGAG  500

seq1  ATGAAGACTTCGCTGTTGGGGATGAATCCCCTGGACTAGACAGTGAATCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACTTCGCTGTTGGGGATGAATCCCCTGGACTAGACAGTGAATCT  550

seq1  TTTCTTTTGAGTCTAATTACACATATGTCCAATCCTTGCTGCTGAAAAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGAGTCTAATTACACATATGTCCAATCCTTGCTGCTGAAAAGT  600

seq1  TATTTTCCATAATTACCTACTTTATAAGATACCTTTCATTTATCTATCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCATAATTACCTACTTTATAAGATACCTTTCATTTATCTATCTT  650

seq1  CACTTTCTTTCCCAAGGATTCTAGTGATGAGCTTATGTCTTTATTATGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTTTCCCAAGGATTCTAGTGATGAGCTTATGTCTTTATTATGTC  700

seq1  CATCTTCTTCTTCCCAGTATTTGATTAAATAAATTTTTAATAACTACTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTTCTTCCCAGTATTTGATTAAATAAATTTTTAATAACTACTCT  750

seq1  TTTCCTTGATATTTAAAAAAATATTTAATATTTCACTTGATGATGCCAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGATATTTAAAAAAATATTTAATATTTCACTTGATGATGCCAAA  800

seq1  TATATTCCATAAAATTACTTCACAGGCTTTTATACTCTCTCTCTTTTTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCATAAAATTACTTCACAGGCTTTTATACTCTCTCTCTTTTTTC  850

seq1  TTGTTGATTCAAGCATCTGTTTGAAACTTTGAATTCTGCAGCTTGATTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATTCAAGCATCTGTTTGAAACTTTGAATTCTGCAGCTTGATTGA  900

seq1  GTGTGCTCTTGAAACTCTCTACTGATCTTTTATTACCCTCGTTATATTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTCTTGAAACTCTCTACTGATCTTTTATTACCCTCGTTATATTCT  950

seq1  TCAACTTCAGACTTTCTATTTTTAATGAATTC  980
      ||||||||||||||||||||||||||||||||
seq2  TCAACTTCAGACTTTCTATTTTTAATGAATTC  982


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