BAC Information

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BAC

Clone NameB6Ng01-342A16
Chromosome6 (Build37)
Map Location 131,366,404 - 131,513,720
singlet/doubletdoublet
Overlap geneLOC625758, 5430401F13Rik
Upstream geneEG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda
Downstream geneLOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342A16.bB6Ng01-342A16.g
ACCGA125244GA125245
length4301,160
definitionB6Ng01-342A16.b B6Ng01-342A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,366,404 - 131,366,839)(131,512,497 - 131,513,720)
sequence
caaaccaattatctgggaaatttatttattcattcattcattcatttctc
cagtagcagggaagtcacccagagtgcctcatatattcagcaagtgctct
accattgtgttacatgtttagctcaaatctgtaacaatgtaggtaatgaa
cttatgtgtacatattcatgtttgtttatatgtatgtgcatacacatgtg
tataaaggtccgaattctatgtcgcatgtctctatcaattgctcttttca
attgatgaaattcgtttatagatatttttcactgaatctggaattcactg
ctttagctagactggctgccccacaagctccaggcacctcctatctcttc
tgtaccagtgctaagattacaggggttcactggcacacttcgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattctggttccttatttcacacctgggaagactcagcagccagcagct
gagggaccatccactaagcacaagaggaatttgttctatccaaggagccc
tgtacctctcaaaagtttgttatggttactattcttacaactagtggtat
caaaaccacttttggggattataaaagtgctgcccaaataaatgctttcc
tcctcctaaggaagaataaaactaaccaacagtgctcatagttgacatat
gcactgaactcttgaatgaataaagaggaagggcttgttgggattccagt
ggagtgtgtttctttctcgtgctcagtctgtgaattgtaattgtggttcc
cagttcattgtcttaatggggcagaaattgtaaaaaaaaaaaaaaaacaa
aaaaaaaaaaaaacaataaaaacacagtgagggggctggagagatggctc
aggagttaagagcactaactactcttccagagttcctgagttcaattcta
agcaaacacatgatggctcacaaacatctgtaatgggatatgatgcccac
cactggtgtttttgaagacagctataattgtacataaaataaataaataa
atctttaaaaaaaaaaaccttaacaatgtaatggttaagccatggtaaaa
aaaaaagaaattatattgtttataataaacgtgaaaaaatatgatgtacg
tgtgacataatgagttaaattatctccataaagtttctgttctttgtttt
ctcatttaaagttttaaatgtgtattataaaactttgtaaattgaaatct
gatcttcagagaataaagtaaatgggccatgtacccacagctgtactata
agcacatagtactaagtgattctagctgaacttagtagctgagcagttca
tgagttcaaggtcatcctgggctaaacactcagaactattcagggcccag
catagaccacagtcagaagacaacactaaagcagagtagaacaacagcac
cattacacatactatagtcagtctgatgacagatgaaaaaattctcacaa
aatactgcactcgattagaccatatagttaacacagacagtagtcatgca
tgatcaaagtccctcagtcatatcgtataacttaacccgtagtttttgac
gtactaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_131366404_131366839
seq2: B6Ng01-342A16.b_42_477

seq1  GAATTCCAAACCAATTATCTGGGAAATTTATTTATTCATTCATTCATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCAATTATCTGGGAAATTTATTTATTCATTCATTCATTCA  50

seq1  TTTCTCCAGTAGCAGGGAAGTCACCCAGAGTGCCTCATATATTCAGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCAGTAGCAGGGAAGTCACCCAGAGTGCCTCATATATTCAGCAAG  100

seq1  TGCTCTACCATTGTGTTACATGTTTAGCTCAAATCTGTAACAATGTAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTACCATTGTGTTACATGTTTAGCTCAAATCTGTAACAATGTAGGT  150

seq1  AATGAACTTATGTGTACATATTCATGTTTGTTTATATGTATGTGCATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTTATGTGTACATATTCATGTTTGTTTATATGTATGTGCATACA  200

seq1  CATGTGTATAAAGGTCCGAATTCTATGTCGCATGTCTCTATCAATTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTATAAAGGTCCGAATTCTATGTCGCATGTCTCTATCAATTGCTC  250

seq1  TTTTCAATTGATGAAATTCGTTTATAGATATTTTTCACTGAATCTGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTGATGAAATTCGTTTATAGATATTTTTCACTGAATCTGGAAT  300

seq1  TCACTGCTTTAGCTAGACTGGCTGCCCCACAAGCTCCAGGCACCTCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCTTTAGCTAGACTGGCTGCCCCACAAGCTCCAGGCACCTCCTAT  350

seq1  CTCTTCTGTACCAGTGCTAAGATTACAGGGGTTCACTGGCACACTTCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTACCAGTGCTAAGATTACAGGGGTTCACTGGCACACTTCGTG  400

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  436
      ||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  436

seq1: chr6_131512497_131513720
seq2: B6Ng01-342A16.g_71_1230 (reverse)

seq1  TTTTTAGTACGTTCATAAAAAAAATTAGGTGGTTTTAGATTTATTAACTG  50
      ||||||||||||       ||||| || | ||||    | ||||  || |
seq2  TTTTTAGTACGT------CAAAAACTACG-GGTT---AAGTTAT--AC-G  37

seq1  ATTTATGTAACTTGAAGGGACTTTTGATCAATGGCATGAAACTAACATGG  100
      |  ||||  |||   |||||| ||||||||   |||||  ||||      
seq2  A--TATG--ACT--GAGGGAC-TTTGATCA--TGCATG--ACTA------  70

seq1  TCCTG-GTGT-TTAACTTTATTAATGTGTTCCTTAATCTGAGTTGCAAGT  148
        |||  ||| ||||||      || || ||  ||||| ||| ||| |||
seq2  --CTGTCTGTGTTAACT------ATATGGTC--TAATC-GAG-TGC-AGT  107

seq1  ATTTTGTTGAGAATTTTTTTTCCATCTTGTTCATCAGGAAACTGAACTAT  198
      |||||| ||||||||||||   |||||   |||||||   |||| |||||
seq2  ATTTTG-TGAGAATTTTTT---CATCT--GTCATCAG---ACTG-ACTAT  147

seq1  AGGTTATTGTTGTTATTGGTGCTGTTTGTTCTTACTCTGCTTTAAGTGTT  248
      ||  || |||   || |||||||| |||||| ||||||||||| |||| |
seq2  AG--TA-TGT--GTAATGGTGCTG-TTGTTC-TACTCTGCTTT-AGTG-T  188

seq1  TGTCTTCTGACCTGTGGTTCTTATGCTGGGCCCTGAATAGTTTCTGAGTG  298
      |||||||||| |||||||   ||||||||||||||||||| |||||||||
seq2  TGTCTTCTGA-CTGTGGT--CTATGCTGGGCCCTGAATAG-TTCTGAGTG  234

seq1  TGTAGCCCAGGATGACCTTGAACTCATGAACTGCTCAGCTACTAAGTTCA  348
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCCAGGATGACCTTGAACTCATGAACTGCTCAGCTACTAAGTTCA  284

seq1  GCTAGAATCACTTAGTACTATGTGCTTATAGTACAGCTGT-GGTACATGG  397
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTAGAATCACTTAGTACTATGTGCTTATAGTACAGCTGTGGGTACATGG  334

seq1  CCCATTTTACTTTATTCTCTGAAGATCAGATTTCAATTTACAAAGTTTTA  447
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCA-TTTACTTTATTCTCTGAAGATCAGATTTCAATTTACAAAGTTTTA  383

seq1  TAATACACATTTAAAACTTTAAATGAGAAAACAAAGAACAGAAACTTTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACACATTTAAAACTTTAAATGAGAAAACAAAGAACAGAAACTTTAT  433

seq1  GGAGATAATTTAACTCATTATGTCACACGTACATCATATTTTTTCACGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAATTTAACTCATTATGTCACACGTACATCATATTTTTTCACGTT  483

seq1  TATTATAAACAATATAATTTCTTTTTTTTTTACCATGGCTTAACCATTAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAAACAATATAATTTCTTTTTTTTTTACCATGGCTTAACCATTAC  533

seq1  ATTGTTAAGGTTTTTTTTTTTAAAGATTTATTTATTTATTTTATGTACAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAAGGTTTTTTTTTTTAAAGATTTATTTATTTATTTTATGTACAA  583

seq1  TTATAGCTGTCTTCAAAAACACCAGTGGTGGGCATCATATCCCATTACAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTGTCTTCAAAAACACCAGTGGTGGGCATCATATCCCATTACAG  633

seq1  ATGTTTGTGAGCCATCATGTGTTTGCTTAGAATTGAACTCAGGAACTCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTGAGCCATCATGTGTTTGCTTAGAATTGAACTCAGGAACTCTG  683

seq1  GAAGAGTAGTTAGTGCTCTTAACTCCTGAGCCATCTCTCCAGCCCCCTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTAGTTAGTGCTCTTAACTCCTGAGCCATCTCTCCAGCCCCCTCA  733

seq1  CTGTGTTTTTATTGTTTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTACAA  847
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGTGTTTTTATTGTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTACAA  783

seq1  TTTCTGCCCCATTAAGACAATGAACTGGGAACCACAATTACAATTCACAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCCCATTAAGACAATGAACTGGGAACCACAATTACAATTCACAG  833

seq1  ACTGAGCACGAGAAAGAAACACACTCCACTGGAATCCCAACAAGCCCTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCACGAGAAAGAAACACACTCCACTGGAATCCCAACAAGCCCTTC  883

seq1  CTCTTTATTCATTCAAGAGTTCAGTGCATATGTCAACTATGAGCACTGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATTCATTCAAGAGTTCAGTGCATATGTCAACTATGAGCACTGTT  933

seq1  GGTTAGTTTTATTCTTCCTTAGGAGGAGGAAAGCATTTATTTGGGCAGCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTTTTATTCTTCCTTAGGAGGAGGAAAGCATTTATTTGGGCAGCA  983

seq1  CTTTTATAATCCCCAAAAGTGGTTTTGATACCACTAGTTGTAAGAATAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAATCCCCAAAAGTGGTTTTGATACCACTAGTTGTAAGAATAGT  1033

seq1  AACCATAACAAACTTTTGAGAGGTACAGGGCTCCTTGGATAGAACAAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAACAAACTTTTGAGAGGTACAGGGCTCCTTGGATAGAACAAATT  1083

seq1  CCTCTTGTGCTTAGTGGATGGTCCCTCAGCTGCTGGCTGCTGAGTCTTCC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTGCTTAGTGGATGGTCCCTCAGCTGCTGGCTGCTGAGTCTTCC  1133

seq1  CAGGTGTGAAATAAGGAACCAGAATTC  1224
      |||||||||||||||||||||||||||
seq2  CAGGTGTGAAATAAGGAACCAGAATTC  1160