BAC Information

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BAC

Clone NameB6Ng01-342H21
Chromosome6 (Build37)
Map Location 41,655,143 - 41,656,280
singlet/doubletsinglet
Overlap genenone
Upstream geneMgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel
Downstream geneOlfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342H21.bB6Ng01-342H21.g
ACCGA125560GA125561
length1,0081,141
definitionB6Ng01-342H21.b B6Ng01-342H21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccaaacaacccaggctgttgccaagattaaagattgttcctcaa
aatctaacaacaaagccccattgctaaagacaagacctacataactcact
gaacatggagaagtctagctggtacctacatagagactgcatcactatag
tacagagcctttcctacagaaaggtactttgtatctacatagagactgca
tcactatagtatagtgcctttcctacagaaaggtactctgtagctaccaa
agatgatgcataaacaccaaacacagacacaaaccatatattctaacaat
ggagttctggctacaaaatatgctattgcaatcatgacccaaagattctg
gcaataactactcactatatgatttgacttaagtccctctgcaccagatg
gaacccatatgccatactgcttaggtgaccaagaacttaagaatagaagg
ccaaggaactagggtaaacctaagttttaaaattaacaaaaccaaacaaa
gcaaaatgtagcaaaaatgacttctaatgacacccgtttacaggcataga
tatgtatcttcttcagccattattagagaagcttactcctgcagcatatg
ggaacaaatacacagacacacagcaagataatatgcagaaactgagagac
cttggaacactcaggcctaaaacagatatctccatcgaatttctaccctc
agtgttcaaggaactctgcatcgggggagacagaaagagtgtaagagctg
aaagggacagaagaaaccaacaaaacaagaccttctaaatcagcactatc
aaagctcctatgaattcatagagacagaggcaaatgcacagggcctgcat
ggatttgcatcagttctctctgtatatattgtggcttcctgagtatacaa
atgggtgtgtccctgtagcttagacattttagtggggctcttatccctct
gttgtttgggtttgttttttgagttttgggatttatttattatttatttg
ggtttgtg
gaattcactgggaggggcatggatgcagcagggtggctatgcaatttgaa
aagtaaggcaaagctagagtgtcacttgggacaagtgtcatgaaggaagg
tctaaacttaatgccatataaagcaagatattgggaacaatgagcccctt
gagggaacgtgtgacaaaataaaataatatttgagaaagaactgtgtgat
actgtgatttggaaagattgaaacaaaaactccagaaggtagtggctacc
ctgccagtgtgctatgatgaagcaagatctggcctaagctgatggcaaat
gaaacgaacatgtagtaaagatttcacaggaaaatagtcatggaatctga
ttttagggctaggaaattgtaaaggggtcacagatcggctttgttgttgt
cttggatggctagaagaatggtgaggccagaaacagaaatgggattttgg
ttaagggtgggaatgaagatcagattaagggaaaattgatgcttcataat
atcaggagaccagagtctgggacccagcaagatgggccccataggcaaca
ccttgtgtgcaagcctgaaaacctgaattcaatccccagagcccatggca
gaaggagagaactcattaccaaaggttgccctcttggggccagaggaata
tttcagtggttaagcaaacatacttgaagaggacctgacttcagttccca
gcacccatattgggtgacttccaattccctataacactggcagcagggaa
tctgacactcacttgtagccttcatggacacatgcacttgcatgtggagc
acgcacacacacacacacacacacacacacacacacattaaagagtctat
tctgctattctgctctggaatatactaaggtgtgttccctttctcagtaa
gtctaaggctctctatccatgagtactctgacttcactccattcattttc
tcccttattttgtggcagccaaccccttagttgacattctcctaggaaaa
tgatgataaggaacatttcagagtggtatgagtgtaagctagcctccgtt
gcctttggtgacaatcattgtcctgatccatggaagtaacttgaggaagc
aatggctctgtgacatttagccgtgtgacaaacctccatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_41655143_41656280
seq2: B6Ng01-342H21.g_67_1207

seq1  GAATTCACTGGGAGGGGCATGGATGCAGCAGGGTGGCTATGCAATTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGGAGGGGCATGGATGCAGCAGGGTGGCTATGCAATTTGAA  50

seq1  AAGTAAGGCAAAGCTAGAGTGTCACTTGGGACAAGTGTCATGAAGGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGCAAAGCTAGAGTGTCACTTGGGACAAGTGTCATGAAGGAAGG  100

seq1  TCTAAACTTAATGCCATATAAAGCAAGATATTGGGAACAATGAGCCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACTTAATGCCATATAAAGCAAGATATTGGGAACAATGAGCCCCTT  150

seq1  GAGGGAACGTGTGACAAAATAAAATAATATTTGAGAAAGAACTGTGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAACGTGTGACAAAATAAAATAATATTTGAGAAAGAACTGTGTGAT  200

seq1  ACTGTGATTTGGAAAGATTGAAACAAAAACTCCAGAAGGTAGTGGCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATTTGGAAAGATTGAAACAAAAACTCCAGAAGGTAGTGGCTACC  250

seq1  CTGCCAGTGTGCTATGATGAAGCAAGATCTGGCCTAAGCTGATGGCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTGTGCTATGATGAAGCAAGATCTGGCCTAAGCTGATGGCAAAT  300

seq1  GAAACGAACATGTAGTAAAGATTTCACAGGAAAATAGTCATGGAATCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGAACATGTAGTAAAGATTTCACAGGAAAATAGTCATGGAATCTGA  350

seq1  TTTTAGGGCTAGGAAATTGTAAAGGGGTCACAGATCGGCTTTGTTGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGGCTAGGAAATTGTAAAGGGGTCACAGATCGGCTTTGTTGTTGT  400

seq1  CTTGGATGGCTAGAAGAATGGTGAGGCCAGAAACAGAAATGGGATTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATGGCTAGAAGAATGGTGAGGCCAGAAACAGAAATGGGATTTTGG  450

seq1  TTAAGGGTGGGAATGAAGATCAGATTAAGGGAAAATTGATGCTTCATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGTGGGAATGAAGATCAGATTAAGGGAAAATTGATGCTTCATAAT  500

seq1  ATCAGGAGACCAGAGTCTGGGACCCAGCAAGATGGGCCCCATAGGCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAGACCAGAGTCTGGGACCCAGCAAGATGGGCCCCATAGGCAACA  550

seq1  CCTTGTGTGCAAGCCTGAAAACCTGAATTCAATCCCCAGAGCCCATGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTGCAAGCCTGAAAACCTGAATTCAATCCCCAGAGCCCATGGCA  600

seq1  GAAGGAGAGAACTCATTACCAAAGGTTGCCCTCTTGGGGCCAGAGGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAGAACTCATTACCAAAGGTTGCCCTCTTGGGGCCAGAGGAATA  650

seq1  TTTCAGTGGTTAAGCAAACATACTTGAAGAGGACCTGACTTCAGTTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGGTTAAGCAAACATACTTGAAGAGGACCTGACTTCAGTTCCCA  700

seq1  GCACCCATATTGGGTGACTTCCAATTCCCTATAACACTGGCAGCAGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCATATTGGGTGACTTCCAATTCCCTATAACACTGGCAGCAGGGAA  750

seq1  TCTGACACTCACTTGTAGCCTTCATGGACACATGCACTTGCATGTGGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACACTCACTTGTAGCCTTCATGGACACATGCACTTGCATGTGGAGC  800

seq1  ACGCACACACACACACACACACACACACACACACACATTAAAGAGTCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACACACACACACACACACACACACACACACACATTAAAGAGTCTAT  850

seq1  TCTGCTATTCTGCTCTGGAATATACTAAGGTGTGTT-CCTTTCTCAGTAA  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTGCTATTCTGCTCTGGAATATACTAAGGTGTGTTCCCTTTCTCAGTAA  900

seq1  GTCTAAGGCTCTCTATCCATGAGTACTCTGACTTTCACTCCATTCATTTT  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTCTAAGGCTCTCTATCCATGAGTACTCTGAC-TTCACTCCATTCATTTT  949

seq1  CTCCCTTATTTTGTGGCAGCCAACCCCTTAGTTGACAATTCT-CTAGGAA  998
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  CTCCCTTATTTTGTGGCAGCCAACCCCTTAGTTGAC-ATTCTCCTAGGAA  998

seq1  AATGATGATAAGG-ACATTTCAGAGT-GTATGAGTGTAAGCTAGCTTCCG  1046
      ||||||||||||| |||||||||||| |||||||||||||||||| ||||
seq2  AATGATGATAAGGAACATTTCAGAGTGGTATGAGTGTAAGCTAGCCTCCG  1048

seq1  GTGCCCTTGGTGAC-ATCATGGTCCTGATCCATGAGAGTAACTTGAGGAA  1095
       |||| |||||||| ||||| |||||||||||||  ||||||||||||||
seq2  TTGCCTTTGGTGACAATCATTGTCCTGATCCATGGAAGTAACTTGAGGAA  1098

seq1  GCAGTGGGCTCTGTGACA-TTAGCCCTGTGAACAACCTCCATAG  1138
      ||| | |||||||||||| |||||| |||||  |||||||||||
seq2  GCAAT-GGCTCTGTGACATTTAGCCGTGTGACAAACCTCCATAG  1141