BAC Information

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BAC

Clone NameB6Ng01-342O06
Chromosome6 (Build37)
Map Location 20,815,856 - 20,963,309
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342O06.bB6Ng01-342O06.g
ACCGA125829GA125830
length1,1451,159
definitionB6Ng01-342O06.b B6Ng01-342O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,962,165 - 20,963,309)(20,815,856 - 20,817,021)
sequence
gaattcattatgacaacacagacaagacaaactaactgctcaacagggcc
ttttaaaaggaaatacaacacggatattgtccctgttctgactctatgct
aattaggaaatgctaaacagttgctacagtaagaccgtgcacatatctca
gacctacttctcttcctaggctgggttttctcagtgctggtgacaggtat
gatttgattgttttgtgtaatcaatgactaagattctggtttctttaact
agccttaaggaaagtgaaattgcagctgctgtaataatttgcagataatc
aatttaatctgctttcttgtctagggaacatgtggccattttagggaaat
tctgtgattgccactaaccattgagtgaaatgtaaaactacaattttcat
tttctagggaaaaagaaatatggattctgataagctttgaacctttgggt
accctcttagctttgaagataacttttgcttggtgctctctcttggcatt
tcgacttaaattgctgtggttaactcttaaattgtttgcacctccaggaa
aagtctatggtaatacttgaagtaacatttttatttaaaataacttactt
caggggaagatgttatatattcaacttctaaattttgtataattgctgaa
cacagaatatttatgagaatgaaaacttgcagtcaagtttttgtattgga
aaaatgatgttactttaaggctgatctttaaatataaataaaaaatggtt
gaatgactagtaataatatagcataacctgaaatagatgggtaataaaag
agaggagtgtaaagagtcaatagaggtatattaaaaattgaatcccatat
gtattaaaatagtaatagcacagtagggaagattactagaaaaatgactt
tattggacactggtaatattattatacaagatatgtgaagtattccacct
gaagaaatgcagaagatatggcatagtgctcatgaaagtgtgagccatcc
agattattagaaaatagtttgaggacataatgaagtactggactttgaga
actgaagaagtgatgccaatatcaagtagccagggaagtagccacaatgg
tcaagtgcgaaatatatggacatgccactggcctagaagcagaaa

gaattcatatgagttttctcaagaacacccaagttagtgatgaaatgtat
aacagagtcagcttttgttttttcatttagacataatgaccatctggctg
tttttataaaaaaaaatgcttgttttattggtaaattattgtaatgaaat
aaatgatttgaagtttgtttctacttgtctttgtttggacatctgggaaa
aacaatctctgggtctcattgctatgaacaattagcacaatgggagaaca
tcagattgcagagagaaaacagtacatccagtattaaaatatagaaaaat
actgactttccaagctaaattgaccctaatatatggctggactctgttac
ataatgaaaaacaatttgaaaatatactcggtagagaatcagcttataaa
tgcccaagtctatttaagaaatggatataagtgcaatagaaataaatgta
caacatatgttataaatagcatctgaagataatatgaaagctcacacaac
taaatgggattacttgacaaatgatcaacaccagcaatatatgaggctag
aacttaaataagggtaaactcctccccgtcatgcttcacaggaaccagct
agctaaattgtgatgttggttcaactagctctcaggtttgacttctcata
tgagttaatagcttcaactccacatcctttgtttcaaattttatctttgc
ttccaagaaaaatgtgtgtgtgcatgtgtgcgtgcatgtgtgtgtgtgct
tgtgtgtgtttgtgtgtgtttgcacatgcacgcacctaagggaacctgag
gtcaatactaagactcttccccaatgactttctactatactttttgagac
attggctggaggtcagagagtcttatggaagatcgtagacctgcccactt
cagctagactggctagccagccagctctagagttccatctgtctgatttg
cacaggaattacagcatcagacattaactcatacatggatgctgagatta
aaataagtatatgcttgtcattcagaacaggatgaattttgagtcaaagt
gtcctgaattgtgtgccactatcccttctactggtgttcttgcctgacta
cagaagtagtctcttcagttccaattttcctacaaagaaatcagggacca
aggacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_20962165_20963309
seq2: B6Ng01-342O06.b_48_1192 (reverse)

seq1  TTTCTGCTTCTTAGCCAGTGGCATGTC---ATATATCGCACTTGACATTT  47
      |||||||||||  ||||||||||||||   |||| |||||||||||  ||
seq2  TTTCTGCTTCTAGGCCAGTGGCATGTCCATATATTTCGCACTTGACCATT  50

seq1  GT-GCTACCTTCCCTGGCTACTTGAATATGGCCATCAC-TCTTCAG-TCT  94
      || |||| |||||||||||||||| |||| | |||||| ||||||| |||
seq2  GTGGCTA-CTTCCCTGGCTACTTG-ATATTGGCATCACTTCTTCAGTTCT  98

seq1  CAAAGTCCAGTACCTCATTATGTCCTCAAACTATTTTCTAATTAATCTGG  144
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  CAAAGTCCAGTACTTCATTATGTCCTCAAACTATTTTCTAA-TAATCTGG  147

seq1  ATGGCTCACACCTTTCATGAGCACTATGCCATTATCTTCTGCATTTCTTC  194
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  ATGGCTCACA-CTTTCATGAGCACTATGCCA-TATCTTCTGCATTTCTTC  195

seq1  AGGTGGAATACCTTCACATATCTTGTATAATAATATTACCAGTGTCCAAT  244
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAATA-CTTCACATATCTTGTATAATAATATTACCAGTGTCCAAT  244

seq1  AAAGTCATTTTTCTTGTAATCTTCCCTACTGTGCTATTACTATTTTAATA  294
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGTCATTTTTCTAGTAATCTTCCCTACTGTGCTATTACTATTTTAATA  294

seq1  CATATGGGATTCAATTTTTAATATACCTCTATTGACTCTTTACACTCCTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGGATTCAATTTTTAATATACCTCTATTGACTCTTTACACTCCTC  344

seq1  TCTTTTATTACCCATCTATTTCAGGTTATGCTATATTATTACTAGTCATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTACCCATCTATTTCAGGTTATGCTATATTATTACTAGTCATT  394

seq1  CAACCATTTTTTATTTATATTTAAAGATCAGCCTTAAAGTAACATCATTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATTTTTTATTTATATTTAAAGATCAGCCTTAAAGTAACATCATTT  444

seq1  TTCCAATACAAAAACTTGACTGCAAGTTTTCATTCTCATAAATATTCTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATACAAAAACTTGACTGCAAGTTTTCATTCTCATAAATATTCTGT  494

seq1  GTTCAGCAATTATACAAAATTTAGAAGTTGAATATATAACATCTTCCCCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCAATTATACAAAATTTAGAAGTTGAATATATAACATCTTCCCCT  544

seq1  GAAGTAAGTTATTTTAAATAAAAATGTTACTTCAAGTATTACCATAGACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGTTATTTTAAATAAAAATGTTACTTCAAGTATTACCATAGACT  594

seq1  TTTCCTGGAGGTGCAAACAATTTAAGAGTTAACCACAGCAATTTAAGTCG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGAGGTGCAAACAATTTAAGAGTTAACCACAGCAATTTAAGTCG  644

seq1  AAATGCCAAGAGAGAGCACCAAGCAAAAGTTATCTTCAAAGCTAAGAGGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAAGAGAGAGCACCAAGCAAAAGTTATCTTCAAAGCTAAGAGGG  694

seq1  TACCCAAAGGTTCAAAGCTTATCAGAATCCATATTTCTTTTTCCCTAGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAAGGTTCAAAGCTTATCAGAATCCATATTTCTTTTTCCCTAGAA  744

seq1  AATGAAAATTGTAGTTTTACATTTCACTCAATGGTTAGTGGCAATCACAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATTGTAGTTTTACATTTCACTCAATGGTTAGTGGCAATCACAG  794

seq1  AATTTCCCTAAAATGGCCACATGTTCCCTAGACAAGAAAGCAGATTAAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCTAAAATGGCCACATGTTCCCTAGACAAGAAAGCAGATTAAAT  844

seq1  TGATTATCTGCAAATTATTACAGCAGCTGCAATTTCACTTTCCTTAAGGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATCTGCAAATTATTACAGCAGCTGCAATTTCACTTTCCTTAAGGC  894

seq1  TAGTTAAAGAAACCAGAATCTTAGTCATTGATTACACAAAACAATCAAAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAAGAAACCAGAATCTTAGTCATTGATTACACAAAACAATCAAAT  944

seq1  CATACCTGTCACCAGCACTGAGAAAACCCAGCCTAGGAAGAGAAGTAGGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTGTCACCAGCACTGAGAAAACCCAGCCTAGGAAGAGAAGTAGGT  994

seq1  CTGAGATATGTGCACGGTCTTACTGTAGCAACTGTTTAGCATTTCCTAAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATATGTGCACGGTCTTACTGTAGCAACTGTTTAGCATTTCCTAAT  1044

seq1  TAGCATAGAGTCAGAACAGGGACAATATCCGTGTTGTATTTCCTTTTAAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAGAGTCAGAACAGGGACAATATCCGTGTTGTATTTCCTTTTAAA  1094

seq1  AGGCCCTGTTGAGCAGTTAGTTTGTCTTGTCTGTGTTGTCATAATGAATT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGTTGAGCAGTTAGTTTGTCTTGTCTGTGTTGTCATAATGAATT  1144

seq1  C  1145
      |
seq2  C  1145


seq1: chr6_20815856_20817021
seq2: B6Ng01-342O06.g_69_1227

seq1  GAATTCATATGAGTTTTCTCAAGAACACCCAAGTTAGTGATGAAATGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGAGTTTTCTCAAGAACACCCAAGTTAGTGATGAAATGTAT  50

seq1  AACAGAGTCAGCTTTTGTTTTTTCATTTAGACATAATGACCATCTGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTCAGCTTTTGTTTTTTCATTTAGACATAATGACCATCTGGCTG  100

seq1  TTTTTATAAAAAAAAATGCTTGTTTTATTGGTAAATTATTGTAATGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAAAAAAAAATGCTTGTTTTATTGGTAAATTATTGTAATGAAAT  150

seq1  AAATGATTTGAAGTTTGTTTCTACTTGTCTTTGTTTGGACATCTGGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTTGAAGTTTGTTTCTACTTGTCTTTGTTTGGACATCTGGGAAA  200

seq1  AACAATCTCTGGGTCTCATTGCTATGAACAATTAGCACAATGGGAGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCTCTGGGTCTCATTGCTATGAACAATTAGCACAATGGGAGAACA  250

seq1  TCAGATTGCAGAGAGAAAACAGTACATCCAGTATTAAAATATAGAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGCAGAGAGAAAACAGTACATCCAGTATTAAAATATAGAAAAAT  300

seq1  ACTGACTTTCCAAGCTAAATTGACCCTAATATATGGCTGGACTCTGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTTCCAAGCTAAATTGACCCTAATATATGGCTGGACTCTGTTAC  350

seq1  ATAATGAAAAACAATTTGAAAATATACTCGGTAGAGAATCAGCTTATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAAAAACAATTTGAAAATATACTCGGTAGAGAATCAGCTTATAAA  400

seq1  TGCCCAAGTCTATTTAAGAAATGGATATAAGTGCAATAGAAATAAATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGTCTATTTAAGAAATGGATATAAGTGCAATAGAAATAAATGTA  450

seq1  CAACATATGTTATAAATAGCATCTGAAGATAATATGAAAGCTCACACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATATGTTATAAATAGCATCTGAAGATAATATGAAAGCTCACACAAC  500

seq1  TAAATGGGATTACTTGACAAATGATCAACACCAGCAATATATGAGGCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGGATTACTTGACAAATGATCAACACCAGCAATATATGAGGCTAG  550

seq1  AACTTAAATAAGGGTAAACTCCTCCCCGTCATGCTTCACAGGAACCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAATAAGGGTAAACTCCTCCCCGTCATGCTTCACAGGAACCAGCT  600

seq1  AGCTAAATTGTGATGTTGGTTCAACTAGCTCTCAGGTTTGACTTCTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAATTGTGATGTTGGTTCAACTAGCTCTCAGGTTTGACTTCTCATA  650

seq1  TGAGTTAATAGCTTCAACTCCACATCCTTTGTTTCAAATTTTATCTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAATAGCTTCAACTCCACATCCTTTGTTTCAAATTTTATCTTTGC  700

seq1  TTCCAAGAAAAATGTGTGTGTGCATGTGTGCGTGCATGTGTGTGTGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGAAAAATGTGTGTGTGCATGTGTGCGTGCATGTGTGTGTGTGCT  750

seq1  TGTGTGTGTTTGTGTGTGTTTGCACATGCACGCACCTAAGGGAACCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTTTGTGTGTGTTTGCACATGCACGCACCTAAGGGAACCTGAG  800

seq1  GTCAATACTAAGACTCTTCCCCAATGACTTTCTACTATACTTTTTGAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATACTAAGACTCTTCCCCAATGACTTTCTACTATACTTTTTGAGAC  850

seq1  ATTGGCTGGAGGTCAGAGAGTCTTATGGAAGATCGTAGACCTGCCCACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGGAGGTCAGAGAGTCTTATGGAAGATCGTAGACCTGCCCACTT  900

seq1  CAGCTAGACTGGCTAGCCAGCCAGCTCTAGAGTTCCATCTGTCTGATTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGACTGGCTAGCCAGCCAGCTCTAGAGTTCCATCTGTCTGATTTG  950

seq1  CACAGGAATTACAGGCATCAGACATTAACTCATACATGGATGCTGAGGAT  1000
      ||||||||||||| |||||||||||||||||||||||||||||||||   
seq2  CACAGGAATTACA-GCATCAGACATTAACTCATACATGGATGCTGAG--A  997

seq1  TTAAAATAAGTATATGCTTGTCATTCAG-ACAGGATGAATTTTGAGTCAA  1049
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  TTAAAATAAGTATATGCTTGTCATTCAGAACAGGATGAATTTTGAGTC-A  1046

seq1  AAGTGTCCTGGAATTGTTGGTGCACTTATCCC-TCTACTGGGTGTTC-TG  1097
      ||||||||| |||||||  ||||   |||||| |||||| ||||||| ||
seq2  AAGTGTCCT-GAATTGT--GTGCCACTATCCCTTCTACT-GGTGTTCTTG  1092

seq1  CCTGACTACAGAAGGTAGTCTCTTCAGGTTCCA--TTTCCTCACAAAAGA  1145
      ||||||||||||| |||||||||||| ||||||  |||||| || |||||
seq2  CCTGACTACAGAA-GTAGTCTCTTCA-GTTCCAATTTTCCT-AC-AAAGA  1138

seq1  AATACAGGG-GCAAAGACAGAA  1166
      ||| |||||  ||| |||||||
seq2  AAT-CAGGGACCAAGGACAGAA  1159


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