BAC Information

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BAC

Clone NameB6Ng01-343C22
Chromosome6 (Build37)
Map Location 75,532,935 - 75,661,112
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
Downstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343C22.bB6Ng01-343C22.g
ACCGA126030GA126031
length1,1581,002
definitionB6Ng01-343C22.b B6Ng01-343C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,532,935 - 75,534,100)(75,660,108 - 75,661,112)
sequence
gaattcttcctgttgaaataaaaaaaaaggtcttatccaaagttggtttt
tgtgattgactcttcatgtgagaaagtagctgttaatttctaatgattta
aatcaaactataccattataatttgtctgatggctccagttacaggagaa
cagttagctttccattccttatgttgggttgcactaaaatgccctctcaa
gcttccacttcctatctcttcatcagccttctttcaagtgtgtggactga
tcatgttaacaacaccaatctttcaaatttagacttgtatgtaccatggc
tgtttggtgatcacataatgttataaactagggctcatgttcttttccca
tcaatagttttagtaggttgcccgagtacatatacatgcataagtatctg
tgatgttcatttcccttctgaggttaatacagttatcagtctgcctggtg
aactatgtgatttgtttggagacacagtaatgccagattttctgctcttt
ggaagagagtagtttggcagcaggatctctctctgaaacaatccactgtt
gctatagccagataagttatactaatttatggcctatgtattctgaggac
tacatcatgtgcactacacaaatctgttgatatttcttttgagtctggtt
ttgggaattatgcatggtacataagcctatcagattcaaaataatgaaat
agattttcagtgtaaatctctatcctgtagtataaagcatatataattat
atattttatataatatatagtacatgttatataaataattatatcatata
tattgtcctatatcaaaaaagagaccatatgtcagatacttctatttaga
ttatccagtccctacagacttcctacctgattttagcagttgagaaactg
ctgttgagataagcaatacaatgagccaatcggatttgatcccaagttat
caacccagaacaatgtgaactgaatataagggctgcttgaaacaaatcta
aattagaaaagcttgctactcttcacaaggctaaatggtagtaggcagtc
agaacatgcttccaacaaataatagtattgtgaatgcttgcatttgtagt
tttcatgcctatgataaaattaccatgtcaaagggccacctatggaagag
tttatttt

gaattcatttttcaaattctggacttttttttaccaattgaatcaatcct
aaatttgttgttccttgagcaacactcaggcatttattctcttgacatta
agttattttacgttcattgaggtttttgtttgtttgttttgtttttcctt
taaatttcttgagttttttaaatgaactttatgatttcttttgcaaattt
tgtggtacaatattttgtaccattttgtggtacaaatatgggaattttta
ttggcaagtctatcaatagtactggaggattttatttagaaagagaaaaa
taattaggtttttaatattgtttgtatttttataatgaaacattgttttg
tagacctctactctttaactgatatgaacaaagcaggctgaggtagaaca
aacaatatgaagactagattaagcctggaggttgaatgaagttgggtgga
ctgagaaggtgtgtaccccaaaacaatttgatgctcattagaaacacctt
agatacctctaatggacaaaaagcaaaaggtaaaataaggattatcactg
caaaataagtgataaataggtataattttatcatagaatacactctggtg
tgaaaaaagacaaaatagaatctaaacaaaaactttcatcatatagaaat
aaagatctgaattcacaaagcagattaattaagatgaatacttgtgtgcc
caacatttggatgaggaaggcaagttttactaggagagtagagtcataaa
tattagcatgttgataacagattccagaagcccacttctaatgtaaatta
tctgtatgctaaatcaatgaaaacatattgacctttaaactatattgtag
acacatgatacgatttcatctaaaagcaaaataatcagaaattctgtata
aaggaatgacaaaagaagatagtatcttcaaagataaatatatttatata
aatatatttatataaatacttaaataaataaaacagctatattaattaat
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_75532935_75534100
seq2: B6Ng01-343C22.b_43_1200

seq1  GAATTCTTCCTGTTGAAATAAAAAAAAAGGTCTTATCCAAAGTTGGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTGTTGAAATAAAAAAAAAGGTCTTATCCAAAGTTGGTTTT  50

seq1  TGTGATTGACTCTTCATGTGAGAAAGTAGCTGTTAATTTCTAATGATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTGACTCTTCATGTGAGAAAGTAGCTGTTAATTTCTAATGATTTA  100

seq1  AATCAAACTATACCATTATAATTTGTCTGATGGCTCCAGTTACAGGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACTATACCATTATAATTTGTCTGATGGCTCCAGTTACAGGAGAA  150

seq1  CAGTTAGCTTTCCATTCCTTATGTTGGGTTGCACTAAAATGCCCTCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGCTTTCCATTCCTTATGTTGGGTTGCACTAAAATGCCCTCTCAA  200

seq1  GCTTCCACTTCCTATCTCTTCATCAGCCTTCTTTCAAGTGTGTGGACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCACTTCCTATCTCTTCATCAGCCTTCTTTCAAGTGTGTGGACTGA  250

seq1  TCATGTTAACAACACCAATCTTTCAAATTTAGACTTGTATGTACCATGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTAACAACACCAATCTTTCAAATTTAGACTTGTATGTACCATGGC  300

seq1  TGTTTGGTGATCACATAATGTTATAAACTAGGGCTCATGTTCTTTTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTGATCACATAATGTTATAAACTAGGGCTCATGTTCTTTTCCCA  350

seq1  TCAATAGTTTTAGTAGGTTGCCCGAGTACATATACATGCATAAGTATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGTTTTAGTAGGTTGCCCGAGTACATATACATGCATAAGTATCTG  400

seq1  TGATGTTCATTTCCCTTCTGAGGTTAATACAGTTATCAGTCTGCCTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTCATTTCCCTTCTGAGGTTAATACAGTTATCAGTCTGCCTGGTG  450

seq1  AACTATGTGATTTGTTTGGAGACACAGTAATGCCAGATTTTCTGCTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGTGATTTGTTTGGAGACACAGTAATGCCAGATTTTCTGCTCTTT  500

seq1  GGAAGAGAGTAGTTTGGCAGCAGGATCTCTCTCTGAAACAATCCACTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGTAGTTTGGCAGCAGGATCTCTCTCTGAAACAATCCACTGTT  550

seq1  GCTATAGCCAGATAAGTTATACTAATTTATGGCCTATGTATTCTGAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGCCAGATAAGTTATACTAATTTATGGCCTATGTATTCTGAGGAC  600

seq1  TACATCATGTGCACTACACAAATCTGTTGATATTTCTTTTGAGTCTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCATGTGCACTACACAAATCTGTTGATATTTCTTTTGAGTCTGGTT  650

seq1  TTGGGAATTATGCATGGTACATAAGCCTATCAGATTCAAAATAATGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATTATGCATGGTACATAAGCCTATCAGATTCAAAATAATGAAAT  700

seq1  AGATTTTCAGTGTAAATCTCTATCCTGTAGTATAAAGCATATATAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCAGTGTAAATCTCTATCCTGTAGTATAAAGCATATATAATTAT  750

seq1  ATATTTTATATAATATATAGTACATGTTATATAAATAATTATATCATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATATAATATATAGTACATGTTATATAAATAATTATATCATATA  800

seq1  TATTGTCCTATATCAAAAAAGAGACCATATGTCAGATACTTCTATTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCCTATATCAAAAAAGAGACCATATGTCAGATACTTCTATTTAGA  850

seq1  TTATCCAGTCCCTACAGACTTCCTACCTGATTTTAGCAGTTGAGAAACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGTCCCTACAGACTTCCTACCTGATTTTAGCAGTTGAGAAACTG  900

seq1  CTGTTGAGATAAGCAATACAAATGAGCCAATCGGATTTGATCCCAAGTTA  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGTTGAGATAAGCAATAC-AATGAGCCAATCGGATTTGATCCCAAGTTA  949

seq1  TCAACCCAGAACAATGTGAACTGAATATAAGGGCTGCTTGAAACAAATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCAGAACAATGTGAACTGAATATAAGGGCTGCTTGAAACAAATCT  999

seq1  AAATTTAGAAAAAGCTTGCTACTCTTCAC-AGGCTAAAATGGTAGTAGGC  1049
      ||| |||| |||||||||||||||||||| ||||| ||||||||||||||
seq2  AAA-TTAG-AAAAGCTTGCTACTCTTCACAAGGCT-AAATGGTAGTAGGC  1046

seq1  AGTCAGAACAATGCTTCCAACAAAATAATTAAGTATGTGATATTGCTTGC  1099
      ||||||||| ||||||||||| |||||||  ||||| ||  | |||||||
seq2  AGTCAGAAC-ATGCTTCCAAC-AAATAAT--AGTAT-TGTGAATGCTTGC  1091

seq1  ATTTGTAAGTTTTCATTGCTATGATAAAA-TACCATGTCAAAAGGCAACT  1148
      |||||| |||||||||  ||||||||||| |||||||||||| ||| || 
seq2  ATTTGT-AGTTTTCATGCCTATGATAAAATTACCATGTCAAAGGGCCACC  1140

seq1  TAGTGAAGAGTTTATTTT  1166
      ||  ||||||||||||||
seq2  TATGGAAGAGTTTATTTT  1158


seq1: chr6_75660108_75661112
seq2: B6Ng01-343C22.g_62_1063 (reverse)

seq1  ATATTAATTTAATTATAGCTGTTTTATTTATTTAAGTATTTATATAAATA  50
      |||||||||  | |||||||||||||||||||||||||||||||||||||
seq2  ATATTAATT--AATATAGCTGTTTTATTTATTTAAGTATTTATATAAATA  48

seq1  TATTTATATAAATATATTTATCTTTGAAGATACTATCTTCTTTTTGTCAT  100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATTTATATAAATATATTTATCTTTGAAGATACTATCTTC-TTTTGTCAT  97

seq1  TCCTTTATACAGAATTTCTGATTATTTTGCTTTTAGATGAAATCGTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATACAGAATTTCTGATTATTTTGCTTTTAGATGAAATCGTATCA  147

seq1  TGTGTCTACAATATAGTTTAAAGGTCAATATGTTTTCATTGATTTAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTACAATATAGTTTAAAGGTCAATATGTTTTCATTGATTTAGCAT  197

seq1  ACAGATAATTTACATTAGAAGTGGGCTTCTGGAATCTGTTATCAACATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAATTTACATTAGAAGTGGGCTTCTGGAATCTGTTATCAACATGC  247

seq1  TAATATTTATGACTCTACTCTCCTAGTAAAACTTGCCTTCCTCATCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTATGACTCTACTCTCCTAGTAAAACTTGCCTTCCTCATCCAAA  297

seq1  TGTTGGGCACACAAGTATTCATCTTAATTAATCTGCTTTGTGAATTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGCACACAAGTATTCATCTTAATTAATCTGCTTTGTGAATTCAGA  347

seq1  TCTTTATTTCTATATGATGAAAGTTTTTGTTTAGATTCTATTTTGTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTCTATATGATGAAAGTTTTTGTTTAGATTCTATTTTGTCTTT  397

seq1  TTTCACACCAGAGTGTATTCTATGATAAAATTATACCTATTTATCACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACACCAGAGTGTATTCTATGATAAAATTATACCTATTTATCACTTA  447

seq1  TTTTGCAGTGATAATCCTTATTTTACCTTTTGCTTTTTGTCCATTAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGTGATAATCCTTATTTTACCTTTTGCTTTTTGTCCATTAGAGG  497

seq1  TATCTAAGGTGTTTCTAATGAGCATCAAATTGTTTTGGGGTACACACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAGGTGTTTCTAATGAGCATCAAATTGTTTTGGGGTACACACCTT  547

seq1  CTCAGTCCACCCAACTTCATTCAACCTCCAGGCTTAATCTAGTCTTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCACCCAACTTCATTCAACCTCCAGGCTTAATCTAGTCTTCATA  597

seq1  TTGTTTGTTCTACCTCAGCCTGCTTTGTTCATATCAGTTAAAGAGTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTCTACCTCAGCCTGCTTTGTTCATATCAGTTAAAGAGTAGAG  647

seq1  GTCTACAAAACAATGTTTCATTATAAAAATACAAACAATATTAAAAACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAAACAATGTTTCATTATAAAAATACAAACAATATTAAAAACCT  697

seq1  AATTATTTTTCTCTTTCTAAATAAAATCCTCCAGTACTATTGATAGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTTCTCTTTCTAAATAAAATCCTCCAGTACTATTGATAGACTT  747

seq1  GCCAATAAAAATTCCCATATTTGTACCACAAAATGGTACAAAATATTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAAAAATTCCCATATTTGTACCACAAAATGGTACAAAATATTGTA  797

seq1  CCACAAAATTTGCAAAAGAAATCATAAAGTTCATTTAAAAAACTCAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAATTTGCAAAAGAAATCATAAAGTTCATTTAAAAAACTCAAGAA  847

seq1  ATTTAAAGGAAAAACAAAACAAACAAACAAAAACCTCAATGAACGTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGGAAAAACAAAACAAACAAACAAAAACCTCAATGAACGTAAAA  897

seq1  TAACTTAATGTCAAGAGAATAAATGCCTGAGTGTTGCTCAAGGAACAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAATGTCAAGAGAATAAATGCCTGAGTGTTGCTCAAGGAACAACA  947

seq1  AATTTAGGATTGATTCAATTGGTAAAAAAAAGTCCAGAATTTGAAAAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGGATTGATTCAATTGGTAAAAAAAAGTCCAGAATTTGAAAAATG  997

seq1  AATTC  1005
      |||||
seq2  AATTC  1002


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