BAC Information

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BAC

Clone NameB6Ng01-343E15
Chromosome6 (Build37)
Map Location 9,657,871 - 9,658,888
singlet/doubletsinglet
Overlap genenone
Upstream geneIca1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343E15.bB6Ng01-343E15.g
ACCGA126106GA126107
length8451,073
definitionB6Ng01-343E15.b B6Ng01-343E15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcataaaggtagaaagcattttg
ccaaatgctttctcagcatctaactagatgattatgtggtttttgtcatt
gattttgtttatatagtggattatgttgatggatttccatatattaaatc
atccctgcatccctgggatgaagcctactttcatgatgatgatgatggat
gatcgttttgatgtgttcttggattcggtttgggggaattttattgagta
tttttgcatcgatattcataagggaaattagtctaaagttctctttcttt
gttcgatctttgtcagctttaggtatcagagtaattgtgggttcatagaa
tgaattgagtagagtaccttctgtttctattttgtggaatattttgagga
gagttggaattaggtcttctttgaaggtctgatagaactctccactaaac
ccatctggtcctggactttttttggttgggagactattgatgactgcttc
taattctttaggggaaatgggactgtttagatcattaatcttatcttatt
aactttggtacctggtatctgtctaggaagttgttcatttcatccaggtt
ttctagtttgcagtaggatctgatgatgttttgaatatcctcaggtcctg
ttgttatgtctccgtttttcattttctgattttgttaattaggatactgt
ccctctgccctctagtaattctggctaatgtttgtatcttatcatgtcga
ttttctcaaagtgccagcctctggtttggttgattctttgaatagttctt
tttgcttccactggtttgttttggctctgaattagactatttcct
gaattcaaatggcactatttgaaaagattagaagatgtgactttgttgga
gtagatgtggacttgttagtcgttatggctttgttggagggaatgtgcca
ttggaggtgggctttgaggattcaaaagcccatgtcaagcccagtgattt
ttcttcctgctgcccatggatacagaggtagtctccagaatcgcatctgc
ctgtatgcggcaatgcttctggccatgaaactgtatactgaaactatccc
caataaaatgctttcttttataaggcttgccttggttatggtgtatcttc
acagcaatagaacactgactaagatgccatcaaaaacagttgatgattct
tataggtacttaggtgggtagccctccactggagtaaaatcagcctttcc
taagccacatgtttaaagaatgcatatttctcttctcatcagttatcaat
tgctaattgctctttaatttgtagagggatttcctgcccattcgtcccca
gtctattctagcattttgcctagttgaacttgcatatatttgaaaatatt
tcttgcttgtggtcatatgcttcctctgcctcttctgtacttatctctga
attttggaaggaggaagtatgctatagatgtcccacttaaggcttagcac
tatacagtctcatatttacttgacttttactagttgcaggacttggtatt
tattgccatgtactaaaaaataaaataaataaaactttctcttatgaaat
ctcagaaatgaaccaatctttgggtgtgatgataagccactatgaattat
ttaagtactgttgtaattgatctgatcaatagtaataggtccttaactat
agtctgtggtttttgtctagccagggggaattgacccaaaataataatac
caggtatggccttaagtataattcaaagtagccgggttactatgatgata
ttctgccactattgcactagtgggcaagtcttgccaggctgttccttatt
gtagcttacagagatcaatagttgagtaagaatggtaattactgttttta
atcagtagcaaggtatagtaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9657871_9658888
seq2: B6Ng01-343E15.g_106_1125

seq1  CTTTGTTGGAGTAGATGTGGACTTGTTAGTCGTTATGGCTTTGTTGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGGAGTAGATGTGGACTTGTTAGTCGTTATGGCTTTGTTGGAGG  50

seq1  GAATGTGCCATTGGAGGTGGGCTTTGAGGATTCAAAAGCCCATGTCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGCCATTGGAGGTGGGCTTTGAGGATTCAAAAGCCCATGTCAAGC  100

seq1  CCAGTGATTTTTCTTCCTGCTGCCCATGGATACAGAGGTAGTCTCCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATTTTTCTTCCTGCTGCCCATGGATACAGAGGTAGTCTCCAGAA  150

seq1  TCGCATCTGCCTGTATGCGGCAATGCTTCTGGCCATGAAACTGTATACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCATCTGCCTGTATGCGGCAATGCTTCTGGCCATGAAACTGTATACTG  200

seq1  AAACTATCCCCAATAAAATGCTTTCTTTTATAAGGCTTGCCTTGGTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATCCCCAATAAAATGCTTTCTTTTATAAGGCTTGCCTTGGTTATG  250

seq1  GTGTATCTTCACAGCAATAGAACACTGACTAAGATGCCATCAAAAACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTTCACAGCAATAGAACACTGACTAAGATGCCATCAAAAACAGT  300

seq1  TGATGATTCTTATAGGTACTTAGGTGGGTAGCCCTCCACTGGAGTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATTCTTATAGGTACTTAGGTGGGTAGCCCTCCACTGGAGTAAAAT  350

seq1  CAGCCTTTCCTAAGCCACATGTTTAAAGAATGCATATTTCTCTTCTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTCCTAAGCCACATGTTTAAAGAATGCATATTTCTCTTCTCATC  400

seq1  AGTTATCAATTGCTAATTGCTCTTTAATTTGTAGAGGGATTTCCTGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCAATTGCTAATTGCTCTTTAATTTGTAGAGGGATTTCCTGCCCA  450

seq1  TTCGTCCCCAGTCTATTCTAGCATTTTGCCTAGTTGAACTTGCATATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCCCCAGTCTATTCTAGCATTTTGCCTAGTTGAACTTGCATATATT  500

seq1  TGAAAATATTTCTTGCTTGTGGTCATATGCTTCCTCTGCCTCTTCTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATATTTCTTGCTTGTGGTCATATGCTTCCTCTGCCTCTTCTGTAC  550

seq1  TTATCTCTGAATTTTGGAAGGAGGAAGTATGCTATAGATGTCCCACTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTGAATTTTGGAAGGAGGAAGTATGCTATAGATGTCCCACTTAA  600

seq1  GGCTTAGCACTATACAGTCTCATATTTACTTGACTTTTACTAGTTGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGCACTATACAGTCTCATATTTACTTGACTTTTACTAGTTGCAGG  650

seq1  ACTTGGTATTTATTGCCATGTACTAAAAAATAAAATAAATAAAACTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTATTTATTGCCATGTACTAAAAAATAAAATAAATAAAACTTTCT  700

seq1  CTTATGAAATCTCAGAAATGAACCAATCTTTGGGTGTGATGATAAGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAAATCTCAGAAATGAACCAATCTTTGGGTGTGATGATAAGCCAC  750

seq1  TATGAATTATTTAAGTACTGTTGTAATTGATCTGATCAATAGTAATAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTATTTAAGTACTGTTGTAATTGATCTGATCAATAGTAATAGGT  800

seq1  CCTTAACTATAGTCTGTGGTTTTTGTCTAGCCAGGGGGAATTGACCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAACTATAGTCTGTGGTTTTTGTCTAGCCAGGGGGAATTGACCCAAA  850

seq1  ATAATAATACCAGGTATGGCCTTAAGTATAATTCAAAGTAGCC-GGTTAC  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATAATAATACCAGGTATGGCCTTAAGTATAATTCAAAGTAGCCGGGTTAC  900

seq1  TATGATGATATTCTGCCACTATTGCACTAGTGGGCAAGTCTTGCCAGGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGATATTCTGCCACTATTGCACTAGTGGGCAAGTCTTGCCAGGCT  950

seq1  GTTCCTTATTGTAGCTTACAGAGATC-ATAGTTGAGTAAGAATGGTAATT  998
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTTCCTTATTGTAGCTTACAGAGATCAATAGTTGAGTAAGAATGGTAATT  1000

seq1  ACTGTTTTATTCCAGTAGCA  1018
      ||||||||    ||||||||
seq2  ACTGTTTTTAATCAGTAGCA  1020