BAC Information

Click to search

BAC

Clone NameB6Ng01-343E17
Chromosome6 (Build37)
Map Location 9,151,833 - 9,205,097
singlet/doubletdoublet
Overlap geneNxph1
Upstream geneBC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343E17.bB6Ng01-343E17.g
ACCGA126110GA126111
length1,1711,212
definitionB6Ng01-343E17.b B6Ng01-343E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,203,924 - 9,205,097)(9,151,833 - 9,153,038)
sequence
gaattcctattgaagtttattgatatctgaaacacataaattataggcct
gatatagaaatgcagtattcaaatatataagcaaggcaattaaggaagga
tacactagatttgcaatgtagtaaaaaaagaaagcattacactgatatct
tttagcataaaattgagtaatatttgtaattcagtatattacttagggaa
atgatccagtagcttgccttaaaatttctcttcgtttctgtgtatcagtt
taaaaatttactacattatttggaaactatagaaacgtgacaagaaaata
attggagtatggatttgcaaccattatttatctttataatctccttcata
attctggaagtatgattttaatccaaagcattattgtgattattgtataa
acaaatataaaattatggagttatactggacataaattttagaaaagggt
ctttgcgtgctaataagttgctatgtacttcattagactttactccgtga
tgagcctgattcacagtgtcctacatctcctagttctgtaaaagcacatc
cacaaactccagtgaatgatggaagttatccctaccaggtattaatatca
cactatgtagttaattgtagaaaatgtccactcttctctggaacaaaata
tctatgcaaaaaccctaataactcaggcaactcaggtttgttgagggtct
tctcatgctgttccacaggttgcttaagacatccacaggtcatggatggt
actctggttttatttggaatggtacctgattttcactcaccattatctca
ttctgccatctccaaagacccgcatcccatcagtttatccataatcaaca
ctgtcaaacagtttttgtatttttgcatcctaaccttgtggattcatcag
cttctgcattccacatgctagctacattccctgtgttctctatgttccct
attagaagccttgcacatttcaaaatttcacatacaagcaagggtcttat
gttgaaagaactaaaactctttcccagagacatggtaccattaatcatta
catttctagcaacgacaaacggaccattcttttttctcttgtgatgtaaa
taggagcaccggtttctgattgtggcaaggtgatttaatacctctatatt
tcgtaacattgcataacaaac

gaattctttctttctttcatttagagacttccttttggtcaacaattagg
aaaatctacttgactctgattggttgaagtggcataaggctcactcagct
ctgatacattttcaaagctccctggagataaattacaatctcttgggaaa
aattctctataactttccagtgagttctttcttttttgaagtaatgtcca
taaaaagaaattgaggaatctatgctatgcaacattgccatgcatgctat
acataggcttatctgattaggagaagtacttttatatagtcaaaagatag
gtggctctgtgtgttaaacactaactgcaaaagaatgaggtcttggcttt
gaatacccagagctcaagtaaagtattgatgattatagatggtctttgaa
tggcatgactttcagtggaagtctgagtgacaagagatgctggccaggca
atgttctggagagattccttttcagttagcaggaggagctaaacaccagg
gaccaagaacagtgtggtgatctaaggaggtgggactacataaggaagag
gtactaaagataacaatatgggcctataaagactgataggtttcacaaac
cataaggaaattcagattttattctagacagtctgggatataattggagt
atatttcattgagacagtaaaatgaaattatctgacaaaaaatattttca
agatcattctggcacctgaaaggagaattaaccataatcagagaagattg
aaagactaaaaaccattagtaaagggaacatgatgtacttaaaatttcaa
aaaattacaaagaaaaaattataaagaaaaaatgtattggacaatatcta
gtgcttttgttgggggtagagggaaccaggaggatccctggatctttctg
actggtcagtctgaccaaatggcaatctctaacctcacacctacaaacat
gtactctcgggaacatgcatgtacatttacatagacacacacacacacac
atacacacacacacactctgaagaaaatgaaaacctattatgattatatg
ttaggtggagtagatcagagactattattgttagataggatattccttaa
ataaggttccaaagagagatttatacctgaccttgcttccacactcttct
tggattattcttagaccatcctcatctctaatgggagatatacctgaaat
ttttctctcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9203924_9205097
seq2: B6Ng01-343E17.b_44_1214 (reverse)

seq1  GTTTGTTATGC-ATGTTACG-AATATAGAGTAATAAAACCACCTTG-CAC  47
      ||||||||||| |||||||| |||||||||  || ||| ||||||| |||
seq2  GTTTGTTATGCAATGTTACGAAATATAGAGGTATTAAATCACCTTGCCAC  50

seq1  ATTCAGAAA-CGGTGCTTCCTTATTTACATCAC-AGAG-AAAAAGAATTT  94
      | ||||||| |||||||  | |||||||||||| |||| ||||||||   
seq2  AATCAGAAACCGGTGCT--CCTATTTACATCACAAGAGAAAAAAGAA---  95

seq1  GTTTTGTTTTGTTTGT-TTTGCTAGAAATGTAATGATTAATGGTAACATG  143
          || |  ||||||  ||||||||||||||||||||||||||| ||||
seq2  ----TGGTCCGTTTGTCGTTGCTAGAAATGTAATGATTAATGGTACCATG  141

seq1  TCTCTGGGAAAGAGTTTTAGTTCTTTCAACATAAGACCCTTGCTTGTATG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGAAAGAGTTTTAGTTCTTTCAACATAAGACCCTTGCTTGTATG  191

seq1  TGAAATTTTTGAAATGTGCAAGGCTTCTAATAGGGAACATAGAGAACACA  243
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAA-TTTTGAAATGTGCAAGGCTTCTAATAGGGAACATAGAGAACACA  240

seq1  GGGAATGTAGCTAGCATGTGGAATGCAGAAGCTGATGAATCCACAAGGTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTAGCTAGCATGTGGAATGCAGAAGCTGATGAATCCACAAGGTT  290

seq1  AGGATGCAAAAATACAAAAACTGTTTGACAGTGTTGATTATGGATAAACT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCAAAAATACAAAAACTGTTTGACAGTGTTGATTATGGATAAACT  340

seq1  GATGGGATGCGGGTCTTTGGAGATGGCAGAATGAGATAATGGTGAGTGAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGATGCGGGTCTTTGGAGATGGCAGAATGAGATAATGGTGAGTGAA  390

seq1  AATCAGGTACCATTCCAAATAAAACCAGAGTACCATCCATGACCTGTGGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGTACCATTCCAAATAAAACCAGAGTACCATCCATGACCTGTGGA  440

seq1  TGTCTTAAGCAACCTGTGGAACAGCATGAGAAGACCCTCAACAAACCTGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAAGCAACCTGTGGAACAGCATGAGAAGACCCTCAACAAACCTGA  490

seq1  GTTGCCTGAGTTATTAGGGTTTTTGCATAGATATTTTGTTCCAGAGAAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTGAGTTATTAGGGTTTTTGCATAGATATTTTGTTCCAGAGAAGA  540

seq1  GTGGACATTTTCTACAATTAACTACATAGTGTGATATTAATACCTGGTAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACATTTTCTACAATTAACTACATAGTGTGATATTAATACCTGGTAG  590

seq1  GGATAACTTCCATCATTCACTGGAGTTTGTGGATGTGCTTTTACAGAACT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACTTCCATCATTCACTGGAGTTTGTGGATGTGCTTTTACAGAACT  640

seq1  AGGAGATGTAGGACACTGTGAATCAGGCTCATCACGGAGTAAAGTCTAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGTAGGACACTGTGAATCAGGCTCATCACGGAGTAAAGTCTAAT  690

seq1  GAAGTACATAGCAACTTATTAGCACGCAAAGACCCTTTTCTAAAATTTAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACATAGCAACTTATTAGCACGCAAAGACCCTTTTCTAAAATTTAT  740

seq1  GTCCAGTATAACTCCATAATTTTATATTTGTTTATACAATAATCACAATA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTATAACTCCATAATTTTATATTTGTTTATACAATAATCACAATA  790

seq1  ATGCTTTGGATTAAAATCATACTTCCAGAATTATGAAGGAGATTATAAAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTGGATTAAAATCATACTTCCAGAATTATGAAGGAGATTATAAAG  840

seq1  ATAAATAATGGTTGCAAATCCATACTCCAATTATTTTCTTGTCACGTTTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATGGTTGCAAATCCATACTCCAATTATTTTCTTGTCACGTTTC  890

seq1  TATAGTTTCCAAATAATGTAGTAAATTTTTAAACTGATACACAGAAACGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTCCAAATAATGTAGTAAATTTTTAAACTGATACACAGAAACGA  940

seq1  AGAGAAATTTTAAGGCAAGCTACTGGATCATTTCCCTAAGTAATATACTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATTTTAAGGCAAGCTACTGGATCATTTCCCTAAGTAATATACTG  990

seq1  AATTACAAATATTACTCAATTTTATGCTAAAAGATATCAGTGTAATGCTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAATATTACTCAATTTTATGCTAAAAGATATCAGTGTAATGCTT  1040

seq1  TCTTTTTTTACTACATTGCAAATCTAGTGTATCCTTCCTTAATTGCCTTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTACTACATTGCAAATCTAGTGTATCCTTCCTTAATTGCCTTG  1090

seq1  CTTATATATTTGAATACTGCATTTCTATATCAGGCCTATAATTTATGTGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATATTTGAATACTGCATTTCTATATCAGGCCTATAATTTATGTGT  1140

seq1  TTCAGATATCAATAAACTTCAATAGGAATTC  1174
      |||||||||||||||||||||||||||||||
seq2  TTCAGATATCAATAAACTTCAATAGGAATTC  1171


seq1: chr6_9151833_9153038
seq2: B6Ng01-343E17.g_62_1273

seq1  GAATTCTTTCTTTCTTTCATTTAGAGACTTCCTTTTGGTCAACAATTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTCTTTCATTTAGAGACTTCCTTTTGGTCAACAATTAGG  50

seq1  AAAATCTACTTGACTCTGATTGGTTGAAGTGGCATAAGGCTCACTCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTACTTGACTCTGATTGGTTGAAGTGGCATAAGGCTCACTCAGCT  100

seq1  CTGATACATTTTCAAAGCTCCCTGGAGATAAATTACAATCTCTTGGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACATTTTCAAAGCTCCCTGGAGATAAATTACAATCTCTTGGGAAA  150

seq1  AATTCTCTATAACTTTCCAGTGAGTTCTTTCTTTTTTGAAGTAATGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTATAACTTTCCAGTGAGTTCTTTCTTTTTTGAAGTAATGTCCA  200

seq1  TAAAAAGAAATTGAGGAATCTATGCTATGCAACATTGCCATGCATGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAAATTGAGGAATCTATGCTATGCAACATTGCCATGCATGCTAT  250

seq1  ACATAGGCTTATCTGATTAGGAGAAGTACTTTTATATAGTCAAAAGATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGCTTATCTGATTAGGAGAAGTACTTTTATATAGTCAAAAGATAG  300

seq1  GTGGCTCTGTGTGTTAAACACTAACTGCAAAAGAATGAGGTCTTGGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTGTGTGTTAAACACTAACTGCAAAAGAATGAGGTCTTGGCTTT  350

seq1  GAATACCCAGAGCTCAAGTAAAGTATTGATGATTATAGATGGTCTTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCCAGAGCTCAAGTAAAGTATTGATGATTATAGATGGTCTTTGAA  400

seq1  TGGCATGACTTTCAGTGGAAGTCTGAGTGACAAGAGATGCTGGCCAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGACTTTCAGTGGAAGTCTGAGTGACAAGAGATGCTGGCCAGGCA  450

seq1  ATGTTCTGGAGAGATTCCTTTTCAGTTAGCAGGAGGAGCTAAACACCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGGAGAGATTCCTTTTCAGTTAGCAGGAGGAGCTAAACACCAGG  500

seq1  GACCAAGAACAGTGTGGTGATCTAAGGAGGTGGGACTACATAAGGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGAACAGTGTGGTGATCTAAGGAGGTGGGACTACATAAGGAAGAG  550

seq1  GTACTAAAGATAACAATATGGGCCTATAAAGACTGATAGGTTTCACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAAGATAACAATATGGGCCTATAAAGACTGATAGGTTTCACAAAC  600

seq1  CATAAGGAAATTCAGATTTTATTCTAGACAGTCTGGGATATAATTGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGAAATTCAGATTTTATTCTAGACAGTCTGGGATATAATTGGAGT  650

seq1  ATATTTCATTGAGACAGTAAAATGAAATTATCTGACAAAAAATATTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATTGAGACAGTAAAATGAAATTATCTGACAAAAAATATTTTCA  700

seq1  AGATCATTCTGGCACCTGAAAGGAGAATTAACCATAATCAGAGAAGATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATTCTGGCACCTGAAAGGAGAATTAACCATAATCAGAGAAGATTG  750

seq1  AAAGACTAAAAACCATTAGTAAAGGGAACATGATGTACTTAAAATTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTAAAAACCATTAGTAAAGGGAACATGATGTACTTAAAATTTCAA  800

seq1  AAAATTACAAAGAAAAAATTATAAAGAAAAAATGTATTGGACAATATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACAAAGAAAAAATTATAAAGAAAAAATGTATTGGACAATATCTA  850

seq1  GTGCTTTTGTTGGGGGTAGAGGGAACCAGGAGGATCCCTGGATCTTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTTGTTGGGGGTAGAGGGAACCAGGAGGATCCCTGGATCTTTCTG  900

seq1  ACTGGTCAGTCTGACCAAATGGCAATCTCTAACCTCACACCTACAAACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCAGTCTGACCAAATGGCAATCTCTAACCTCACACCTACAAACAT  950

seq1  GTACTCTCGGGAACATGCATGTACATTTACATAGACACACACACACACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTCGGGAACATGCATGTACATTTACATAGACACACACACACACAC  1000

seq1  ATACACACACACACACTCTGAAGAAAATGAAAAACCTA-TATGATTATAA  1049
      ||||||||||||||||||||||||||||| |||||||| ||||||||| |
seq2  ATACACACACACACACTCTGAAGAAAATG-AAAACCTATTATGATTAT-A  1048

seq1  TGTTAGGT-GAGTAGAATCAGAAGACTATTATTGTTAGAATAGAATAT--  1096
      |||||||| |||||| ||||| |||||||||||||||| |||| ||||  
seq2  TGTTAGGTGGAGTAG-ATCAG-AGACTATTATTGTTAG-ATAGGATATTC  1095

seq1  CCTAAATAAGG-TCCAAAGAGAGATTTATACCTGA-CTTGCTTTCCACTC  1144
      | ||||||||| ||||||||||||||||||||||| ||||| |||||| |
seq2  CTTAAATAAGGTTCCAAAGAGAGATTTATACCTGACCTTGC-TTCCACAC  1144

seq1  T-TTCTTTGATTAATTTTCTTAGACCAT-CTCATCTAAAATG---GTGAT  1189
      | ||||| |||||   |||||||||||| |||||||  ||||   |  ||
seq2  TCTTCTTGGATTA---TTCTTAGACCATCCTCATCTCTAATGGGAGATAT  1191

seq1  ACCTGAA--TTTTCTCACA--  1206
      |||||||  ||||||| ||  
seq2  ACCTGAAATTTTTCTCTCACA  1212


| Home | SequenceCutter | Blast | Download |