BAC Information

Click to search

BAC

Clone NameB6Ng01-343F16
Chromosome6 (Build37)
Map Location 34,408,967 - 34,410,119
singlet/doubletsinglet
Overlap genenone
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7
Downstream geneBpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343F16.g
ACCGA126154
length1,178
definitionB6Ng01-343F16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgcagctttctttgcaaggatacaaaatagagacgcacctaa
ctaagtgcatcaagaggagaagggataaacatgtatggtacagtaccact
tagcaatacaaagaatgaatgcctctaccaatacacagaataatgtgaat
gaacgccgaggacagaagccaaatattaaagaatattcacttcaaattcc
acttgtgttaagttatataataggtaaaaaataatgtaagatgaaaataa
gcaatggcttgcctttggaggtccaggagtaagtcctctttctcttgaga
tagaaatgtgataagcatataaatacacacttatatctatttgtcaaaat
aattaagacttgtatatttcaatgtatgtaaactttaccctacaaatcag
aaagttaatagttggagcacttgagggctgagtgacacagctgaaacaag
aatggcaggatacctgccataactgaagctgaataatcagtgactaaggt
tcattgtatcatctcatttatgattgaaaatttccacacacacacacaca
cacagacacacacacacacacacacacacacacacagagagagagagaga
gagagacaagcaagagtgatcaaaaggctttcagagatctgaaaatagct
ccacatggctggagcagagtctcttgtacttctttgatctcataggaatt
ttccaagattacagtgagctgaaaacaccaaatctcttagtcacatctca
ttctggagcatgggatggttacaatgactaactaacagaaataaataatt
gtggttggaaaaacagattttctttcaaatgtttcaaatgtgaacataga
tcaagcattgttttcttgagttactctggctgcagcatggggccatgtag
ctactcatggaatatggagacatcttaaaggtacagggttcaaaccagta
taatcctctttttctttcccttggggaaagcttcttggaattggcagtaa
ctaagcttacaccattcctcaatcaacaattaatgaaaaaaatggataaa
tggacttatagttattttttctgggaaattgtagaaggcatgctttgatg
gattgccttaatcatcacttatggtcaatgctgtagaatcattagatgga
gactatataaaatttccctcaccttaac
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34408967_34410119
seq2: B6Ng01-343F16.g_68_1245

seq1  GAATTCACTGCAGCTTTCTTTGCAAGGATACAAAATAGAGACGCACCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCAGCTTTCTTTGCAAGGATACAAAATAGAGACGCACCTAA  50

seq1  CTAAGTGCATCAAGAGGAGAAGGGATAAACATGTATGGTACAGTACCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGCATCAAGAGGAGAAGGGATAAACATGTATGGTACAGTACCACT  100

seq1  TAGCAATACAAAGAATGAATGCCTCTACCAATACACAGAATAATGTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATACAAAGAATGAATGCCTCTACCAATACACAGAATAATGTGAAT  150

seq1  GAACGCCGAGGACAGAAGCCAAATATTAAAGAATATTCACTTCAAATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCCGAGGACAGAAGCCAAATATTAAAGAATATTCACTTCAAATTCC  200

seq1  ACTTGTGTTAAGTTATATAATAGGTAAAAAATAATGTAAGATGAAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGTTAAGTTATATAATAGGTAAAAAATAATGTAAGATGAAAATAA  250

seq1  GCAATGGCTTGCCTTTGGAGGTCCAGGAGTAAGTCCTCTTTCTCTTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCTTGCCTTTGGAGGTCCAGGAGTAAGTCCTCTTTCTCTTGAGA  300

seq1  TAGAAATGTGATAAGCATATAAATACACACTTATATCTATTTGTCAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGTGATAAGCATATAAATACACACTTATATCTATTTGTCAAAAT  350

seq1  AATTAAGACTTGTATATTTCAATGTATGTAAACTTTACCCTACAAATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGACTTGTATATTTCAATGTATGTAAACTTTACCCTACAAATCAG  400

seq1  AAAGTTAATAGTTGGAGCACTTGAGGGCTGAGTGACACAGCTGAAACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAATAGTTGGAGCACTTGAGGGCTGAGTGACACAGCTGAAACAAG  450

seq1  AATGGCAGGATACCTGCCATAACTGAAGCTGAATAATCAGTGACTAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGGATACCTGCCATAACTGAAGCTGAATAATCAGTGACTAAGGT  500

seq1  TCATTGTATCATCTCATTTATGATTGAAAATTTCCACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTATCATCTCATTTATGATTGAAAATTTCCACACACACACACACA  550

seq1  CACAGACACACACACACACACACACACACACACACAGAGAGAGAGAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACACACACACACACACACACACACACACAGAGAGAGAGAGAGA  600

seq1  GAGAGACAAGCAAGAGTGATCAAAAGGCTTTCAGAGATCTGAAAATAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAAGCAAGAGTGATCAAAAGGCTTTCAGAGATCTGAAAATAGCT  650

seq1  CCACATGGCTGGAGCAGAGTCTCTTGTAC-TCTTTGATCTCATAGGAATT  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCACATGGCTGGAGCAGAGTCTCTTGTACTTCTTTGATCTCATAGGAATT  700

seq1  TTCCAAGATTACAGTGAGCTGAAAACACCAAATCTCTTAGTCACATCTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGATTACAGTGAGCTGAAAACACCAAATCTCTTAGTCACATCTCA  750

seq1  TTCTGGAGCAT-GGATGGTTACAATGACTAACTAACAGAAATAAATAATT  798
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGCATGGGATGGTTACAATGACTAACTAACAGAAATAAATAATT  800

seq1  GTGGTTGGAAAAACAGA-TTTCTTTCAAATG-TTCAAATGTGAACATAGA  846
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  GTGGTTGGAAAAACAGATTTTCTTTCAAATGTTTCAAATGTGAACATAGA  850

seq1  TCAAGCATTG-TTTCTTGAGTTAC-CTGGCTGCAGCAT-GGGCCATGTAG  893
      |||||||||| ||||||||||||| ||||||||||||| |||||||||||
seq2  TCAAGCATTGTTTTCTTGAGTTACTCTGGCTGCAGCATGGGGCCATGTAG  900

seq1  CTAC-CATGGAATATGGAGACATC-TAAGGGTACA-GGTTCAAACCAGTA  940
      |||| ||||||||||||||||||| ||| |||||| ||||||||||||||
seq2  CTACTCATGGAATATGGAGACATCTTAAAGGTACAGGGTTCAAACCAGTA  950

seq1  TAATCCCCTTTT--CTTCCCTT-GGGAAAGC-TCTTGAAATT-GCAGTAA  985
      |||||| |||||   ||||||| |||||||| ||||| |||| |||||||
seq2  TAATCCTCTTTTTCTTTCCCTTGGGGAAAGCTTCTTGGAATTGGCAGTAA  1000

seq1  CTAAGC-TACACCATTCC-CAATCAACAATTAATGAAAAAA--TGATAAA  1031
      |||||| ||||||||||| ||||||||||||||||||||||   ||||||
seq2  CTAAGCTTACACCATTCCTCAATCAACAATTAATGAAAAAAATGGATAAA  1050

seq1  T-GACTTATAGTTA-TTTTTCTGGAAAATTGTAAGAAGCATGC-TTGATG  1078
      | |||||||||||| ||||||||| ||||||||  | |||||| ||||||
seq2  TGGACTTATAGTTATTTTTTCTGGGAAATTGTAGAAGGCATGCTTTGATG  1100

seq1  AATTGCCTTATTCATCACTAAT-GTCAATGCTGTAG-ATCATTAGAT-GA  1125
       ||||||||| |||||||| || ||||||||||||| |||||||||| ||
seq2  GATTGCCTTAATCATCACTTATGGTCAATGCTGTAGAATCATTAGATGGA  1150

seq1  GACTATATTAAATTCCCTTCATCTTAAC  1153
      |||||||| ||||| || ||| ||||||
seq2  GACTATATAAAATTTCCCTCACCTTAAC  1178