BAC Information

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BAC

Clone NameB6Ng01-343K11
Chromosome6 (Build37)
Map Location 117,044,361 - 117,103,109
singlet/doubletdoublet
Overlap genenone
Upstream geneTmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439
Downstream geneCxcl12, LOC213422, EG640142, LOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343K11.bB6Ng01-343K11.g
ACCGA126377GA126378
length1,2161,144
definitionB6Ng01-343K11.b B6Ng01-343K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,044,361 - 117,045,582)(117,101,968 - 117,103,109)
sequence
gaattccatgagtcctgtttaccatttgcattgttgtccctcccttcccc
cttcgaactcctcccacaaccgccctgccccgctcctcccacaacagccc
cgccccgccccgctccgccccagtccctctcttactgtgttagcatcttc
ctcattcaatattgttgttgtatctatggtgttataattttcacttcagt
catcaaattcaatttctgaagcttcagtaaataaggagtatgcatttcag
ttctttccctttttcttcccatgcctcgtggttctctttttctgtttgtg
tgttgtctgcagaaattcctaaacccaggactcacgggcagcactgcgaa
tggctacgtttcttcgttttacctctatagcttcattcccaaataatctt
gcaaagcacagacttgccagctgagacctttttttccttctgatctatga
aattagctgccagtcccttgatttaaaaaccactcctgcaacctggaatc
aaagtggaattcctcaagaaagagaaattgaaagcctgcagtgggcacat
aagagactcagtgcttttacagtaacccaagaagggaccggaggctggct
gtccccatcatgccgctctgagcagtgctgtacgtgagtgggtacaagtc
atgcctgacttacgatggaagacttatgtgtaaatgtcacaaaatctaca
agcatgaagagtcccgacttagattaactgaattcaccagagcaatcggt
atgcagaaaaatcaactatatgtctacatatcaataatgaaaaaaatcca
aagataaaatcaaaatgccagttctgactattttggtatgagaagggata
aaacagtaagaagtaaatttgatcaagacatagaagatacatgttatacc
ctgaattgcgaaatacagccgaaatatagacctcaataagctggaaacac
atcttgtgcttttagattaggaatgcttgaccttataaattgcattatgt
cccaaattcatctgcatatgaatgcagttactgttgaaataaaagtagat
ctcaaaatattttaaataaaaatgaacaacacttttcctatagaacttta
taatgccccaacatccttgaaaaatatgaaagtgaagaattcatttctac
tttctaaactacataaaattctgcagtatcaaaccatgtaaacgcacttc
agaaccagattgaatg
gaattccagccccttctcccagatctcatagtaaacaacggtggcgccaa
ccatacagtatgtggccctacgatcagacctagagtcactggcattcata
gccatcctcccaagtccacaatggaccatcatcttctaaacccatgtagt
atcttcagtgtatgaaatgctgaactacagaaggggttgaagttaggaaa
cctgaacgtttactgttatttactgtagtaaatagttcttatttactacc
atagacacagaacatagtctgtaggcaggcaactgcatcctcatctgtta
atctaagaaggaagcaggctcaggagacatctgagatatgcctaaccctg
gcaaggatgaggcctgtaaggcctgctgcctgtctgtcaggtagctcttc
ctgctgatccatttcacaccttgagccagcatcctcatttaccaacatga
ttgagcaaagcctttggctgcaaaggtattatgccagtgcgaaacttttg
gaagcgtcctgattcttactgttgaagctggtcactctccagggacctca
ggtgacaaggacatgcatttgaagggtagctctccagcatagagaagtat
aggaattcctggctttttatcccatgctcctaaagtagttgttatttttt
tgtctgcaggcaagtgtggcttttccaaacaagactctggccctgaagct
caagagcatcaaagagacctcatcctaccccccacccgctccagactcac
aatccaaatgcaaagcacagaggacattcttaggtctcaatccccagagg
caacaccaggaccgggtgcgctaaattaacctggaaaggaccacaggaaa
gagattagacaaatcagagatgagacatgacctgacatattcattatttt
cagtcttgacccagagggctgtaaacataggagaagctgggtccccaagc
cttggacttggttgcaatggacaagtgagagtcccaggtgttaaaaaaca
aaaacaaaaaccaaacgactcttttgctacaagatctcaaaagcccccgc
ccccctcgtgacctgtaacagactgccgcaagaccatgcagtgccagact
agtctctccaatcctagtgacagaatgcctctttcagaaggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_117044361_117045582
seq2: B6Ng01-343K11.b_49_1264

seq1  GAATTCCATGAGTCCTGTTTACCATTTGCATTGTTGTCCCTCCCTTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGTCCTGTTTACCATTTGCATTGTTGTCCCTCCCTTCCCC  50

seq1  CTTCGAACTCCTCCCACAACCGCCCTGCCCCGCTCCTCCCACAACAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAACTCCTCCCACAACCGCCCTGCCCCGCTCCTCCCACAACAGCCC  100

seq1  CGCCCCGCCCCGCTCCGCCCCAGTCCCTCTCTTACTGTGTTAGCATCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCGCCCCGCTCCGCCCCAGTCCCTCTCTTACTGTGTTAGCATCTTC  150

seq1  CTCATTCAATATTGTTGTTGTATCTATGGTGTTATAATTTTCACTTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCAATATTGTTGTTGTATCTATGGTGTTATAATTTTCACTTCAGT  200

seq1  CATCAAATTCAATTTCTGAAGCTTCAGTAAATAAGGAGTATGCATTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATTCAATTTCTGAAGCTTCAGTAAATAAGGAGTATGCATTTCAG  250

seq1  TTCTTTCCCTTTTTCTTCCCATGCCTCGTGGTTCTCTTTTTCTGTTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCCTTTTTCTTCCCATGCCTCGTGGTTCTCTTTTTCTGTTTGTG  300

seq1  TGTTGTCTGCAGAAATTCCTAAACCCAGGACTCACGGGCAGCACTGCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTGCAGAAATTCCTAAACCCAGGACTCACGGGCAGCACTGCGAA  350

seq1  TGGCTACGTTTCTTCGTTTTACCTCTATAGCTTCATTCCCAAATAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACGTTTCTTCGTTTTACCTCTATAGCTTCATTCCCAAATAATCTT  400

seq1  GCAAAGCACAGACTTGCCAGCTGAGACCTTTTTTTCCTTCTGATCTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCACAGACTTGCCAGCTGAGACCTTTTTTTCCTTCTGATCTATGA  450

seq1  AATTAGCTGCCAGTCCCTTGATTTAAAAACCACTCCTGCAACCTGGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCTGCCAGTCCCTTGATTTAAAAACCACTCCTGCAACCTGGAATC  500

seq1  AAAGTGGAATTCCTCAAGAAAGAGAAATTGAAAGCCTGCAGTGGGCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAATTCCTCAAGAAAGAGAAATTGAAAGCCTGCAGTGGGCACAT  550

seq1  AAGAGACTCAGTGCTTTTACAGTAACCCAAGAAGGGACCGGAGGCTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTCAGTGCTTTTACAGTAACCCAAGAAGGGACCGGAGGCTGGCT  600

seq1  GTCCCCATCATGCCGCTCTGAGCAGTGCTGTACGTGAGTGGGTACAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCATCATGCCGCTCTGAGCAGTGCTGTACGTGAGTGGGTACAAGTC  650

seq1  ATGCCTGACTTACGATGGAAGACTTATGTGTAAATGTCACAAAATCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGACTTACGATGGAAGACTTATGTGTAAATGTCACAAAATCTACA  700

seq1  AGCATGAAGAGTCCCGACTTAGATTAACTGAATTCACCAGAGCAATCGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAAGAGTCCCGACTTAGATTAACTGAATTCACCAGAGCAATCGGT  750

seq1  ATGCAGAAAAATCAACTATATGTCTACATATCAATAATGAAAAAAATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAAAATCAACTATATGTCTACATATCAATAATGAAAAAAATCCA  800

seq1  AAGATAAAATCAAAATGCCAGTTCTGACTATTTTGGTATGAGAAGGGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAATCAAAATGCCAGTTCTGACTATTTTGGTATGAGAAGGGATA  850

seq1  AAACAGTAAGAAGTAAATTTGATCAAGACATAGAAGATACATGTTATACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTAAGAAGTAAATTTGATCAAGACATAGAAGATACATGTTATACC  900

seq1  CTGAATTGCGAAATACAGCCGAAATATAGACCTCAATAAGCTGGAAACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGCGAAATACAGCCGAAATATAGACCTCAATAAGCTGGAAACAC  950

seq1  ATCTTGTGCTTTTAGATTAGGAATGCTTGACCTTATAAAATTGCATTATG  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCTTGTGCTTTTAGATTAGGAATGCTTGACCTTAT-AAATTGCATTATG  999

seq1  TCCCAAATTCATCTGCATATTGAATGCAGTTACTGTTGAAATAAAAGTAG  1050
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCCAAATTCATCTGCATA-TGAATGCAGTTACTGTTGAAATAAAAGTAG  1048

seq1  ATCTCAAAATATTTT-AATAAAAATGAAC-ACACTTTTCCTATAGA--CT  1096
      ||||||||||||||| ||||||||||||| ||||||||||||||||   |
seq2  ATCTCAAAATATTTTAAATAAAAATGAACAACACTTTTCCTATAGAACTT  1098

seq1  TATAATGCCCCCAACAATCCTGAAAAAATATGAAAGTTGGAAG-ATTCAT  1145
      ||||||| ||||||| |||||  ||||||||||||||  |||| ||||||
seq2  TATAATG-CCCCAAC-ATCCTTGAAAAATATGAAAGT--GAAGAATTCAT  1144

seq1  TTCCTTAC-TTCTAAACTTACTAAAAATCTGCAGTAATCAAAACAATGTT  1194
      |||  ||| |||||||||   ||||| |||||||| ||| |||| ||| |
seq2  TTC--TACTTTCTAAACTACATAAAATTCTGCAGT-ATC-AAACCATG-T  1189

seq1  AAACCAGCATCAAGACACAGATTGAATG  1222
      ||||   | || |||  |||||||||||
seq2  AAACGCACTTC-AGAACCAGATTGAATG  1216

seq1: chr6_117101968_117103109
seq2: B6Ng01-343K11.g_67_1210 (reverse)

seq1  AGGCCTTCCTTGAAAGA-GCA-TCTGTCACTAGGGATG--GAGACTAGTC  46
      ||||||||  ||||||| ||| ||||||||||||  ||  ||||||||||
seq2  AGGCCTTC--TGAAAGAGGCATTCTGTCACTAGGATTGGAGAGACTAGTC  48

seq1  TGGCACCTGCATTGTCTTGCGGCAGTCTGTTTACAGGTCCACGAGGGGG-  95
      ||||| |||||| |||||||||||||||| |||||||| |||||||||| 
seq2  TGGCA-CTGCATGGTCTTGCGGCAGTCTG-TTACAGGT-CACGAGGGGGG  95

seq1  -CGGGGCTTTTGAGATCTTTGTAGCAAAAGAGTCCGTTTTGTTTTTGTTT  144
        ||||||||||||||| ||||||||||||||| ||||| ||||||||||
seq2  CGGGGGCTTTTGAGATC-TTGTAGCAAAAGAGT-CGTTTGGTTTTTGTTT  143

seq1  TTGTTTTTTAACACCTGGGACTCTCAC-TGTCCATTGCAACCAAGTCCAA  193
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTGTTTTTTAACACCTGGGACTCTCACTTGTCCATTGCAACCAAGTCCAA  193

seq1  GGCTTGGGGA-CCAGCTTCTCCTATGTTTACAGCCCTCTGGGTCAAGACT  242
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGGGACCCAGCTTCTCCTATGTTTACAGCCCTCTGGGTCAAGACT  243

seq1  GAAAATAATGAATATGTCAGGTCATGTCTCATCTCTGATTTGTCTAATCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATGAATATGTCAGGTCATGTCTCATCTCTGATTTGTCTAATCT  293

seq1  CTTTCCTGTGGTCC-TTCCAGGTTAATTTAGCGCACCCGGTCCTGGTGTT  341
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGTGGTCCTTTCCAGGTTAATTTAGCGCACCCGGTCCTGGTGTT  343

seq1  GCCTCTGGGGATTGAGACCTAAGAATGTCCTCTGTGCTTTGCATTTGGAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGGGATTGAGACCTAAGAATGTCCTCTGTGCTTTGCATTTGGAT  393

seq1  TGTGAGTCTGGAGCGGGTGGGGGGTAGGATGAGGTCTCTTTGATGCTCTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCTGGAGCGGGTGGGGGGTAGGATGAGGTCTCTTTGATGCTCTT  443

seq1  GAGCTTCAGGGCCAGAGTCTTGTTTGGAAAAGCCACACTTGCCTGCAGAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCAGGGCCAGAGTCTTGTTTGGAAAAGCCACACTTGCCTGCAGAC  493

seq1  AAAAAAATAACAACTACTTTAGGAGCATGGGATAAAAAGCCAGGAATTCC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAACAACTACTTTAGGAGCATGGGATAAAAAGCCAGGAATTCC  543

seq1  TATACTTCTCTATGCTGGAGAGCTACCCTTCAAATGCATGTCCTTGTCAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTCTCTATGCTGGAGAGCTACCCTTCAAATGCATGTCCTTGTCAC  593

seq1  CTGAGGTCCCTGGAGAGTGACCAGCTTCAACAGTAAGAATCAGGACGCTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCCCTGGAGAGTGACCAGCTTCAACAGTAAGAATCAGGACGCTT  643

seq1  CCAAAAGTTTCGCACTGGCATAATACCTTTGCAGCCAAAGGCTTTGCTCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGTTTCGCACTGGCATAATACCTTTGCAGCCAAAGGCTTTGCTCA  693

seq1  ATCATGTTGGTAAATGAGGATGCTGGCTCAAGGTGTGAAATGGATCAGCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTGGTAAATGAGGATGCTGGCTCAAGGTGTGAAATGGATCAGCA  743

seq1  GGAAGAGCTACCTGACAGACAGGCAGCAGGCCTTACAGGCCTCATCCTTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCTACCTGACAGACAGGCAGCAGGCCTTACAGGCCTCATCCTTG  793

seq1  CCAGGGTTAGGCATATCTCAGATGTCTCCTGAGCCTGCTTCCTTCTTAGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTAGGCATATCTCAGATGTCTCCTGAGCCTGCTTCCTTCTTAGA  843

seq1  TTAACAGATGAGGATGCAGTTGCCTGCCTACAGACTATGTTCTGTGTCTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGATGAGGATGCAGTTGCCTGCCTACAGACTATGTTCTGTGTCTA  893

seq1  TGGTAGTAAATAAGAACTATTTACTACAGTAAATAACAGTAAACGTTCAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTAAATAAGAACTATTTACTACAGTAAATAACAGTAAACGTTCAG  943

seq1  GTTTCCTAACTTCAACCCCTTCTGTAGTTCAGCATTTCATACACTGAAGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTAACTTCAACCCCTTCTGTAGTTCAGCATTTCATACACTGAAGA  993

seq1  TACTACATGGGTTTAGAAGATGATGGTCCATTGTGGACTTGGGAGGATGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATGGGTTTAGAAGATGATGGTCCATTGTGGACTTGGGAGGATGG  1043

seq1  CTATGAATGCCAGTGACTCTAGGTCTGATCGTAGGGCCACATACTGTATG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAATGCCAGTGACTCTAGGTCTGATCGTAGGGCCACATACTGTATG  1093

seq1  GTTGGCGCCACCGTTGTTTACTATGAGATCTGGGAGAAGGGGCTGGAATT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCGCCACCGTTGTTTACTATGAGATCTGGGAGAAGGGGCTGGAATT  1143

seq1  C  1142
      |
seq2  C  1144