BAC Information

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BAC

Clone NameB6Ng01-343K13
Chromosome6 (Build37)
Map Location 19,420,846 - 19,557,244
singlet/doubletdoublet
Overlap genenone
Upstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343K13.bB6Ng01-343K13.g
ACCGA126381GA126382
length1,2141,140
definitionB6Ng01-343K13.b B6Ng01-343K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,420,846 - 19,421,953)(19,556,093 - 19,557,244)
sequence
gaattcagtaagaatattgctattctgtgacattcagaattacattatca
cttttgaataaaagctaagtcactgccctacacaggaatttaccatcttc
taagaagaaggaagtttgagacctaaagaggaacgagaatcgatacttag
aagtatagatagctgagttatacccatacacacgtatttacaatggccta
gaggaaaggtggactatacaataaactaaaataggaactatggcaagggc
atgaagcccttgaccctggtttctaagattaagtgtatcttaggtggagc
ccttgttgattcctgttgttaacaatgaattctatcccaggtggttcctt
tagaccttctgtgtttgtattcctctgttttatgtaagaatccagtaacc
tctttgtaccttgctggtgtgtcacccaacttccttattttcttctgtat
aaagtttgacactcgatttgacaaattacattcagattctacacaacctc
tcttgtgtgcatctgtctgtcaattcatccaacactttgcccacctgcga
ctagagacccgttccttgcagacaaaggggctcagagggtctgcggcaga
tttccttgttcatcttcctgatgtggattttatctaaaaacactgaataa
taaatgctttgagttgcattcatgtcttcaaatatacatttagtatttat
accaatatatagatcttattttaaaagcatatggtagtatttcaggtagt
attttcagttaccatatacacagaattttcatcaaaaagacttaggaaat
aaaaatatgtgttgggagactattagtcaaaaatagaaaagttaagacat
aaatggtagacatgcctaatagaagaaaattgaacccaactgagacttac
tgtgtagctttccattctcaggtaaaccttccaaacataaaaatgggttt
aaataattctctatacagacataactgcttaaaaataaatgttaaaatgt
cattttttaaaataatagcttgccaacacagaaaatgaaattatgccaat
ttgttcattcataatgaaactacagaatgctaatatggtggagtttttca
ttaagcttcagaagaaaacaaaaccggaaaatggaaatactgcatgttca
tacctaagtgaacattgtgatgctaaaagcctcggacctaagtcagccgg
tctcttcgccatta

gaattctttgtgaattctctactgatataagattattctcctctcccctc
ccttcattcccttcccttagcagtttatacagtttatagatgtaactatc
tttcaaaggtcactggccccttctctccacagccttgtctctttcttctc
ttcattcactgacttcctgtcctcctcttctttacttcttttttttttaa
tttttgcctttaatttaatgactacaagcctagaaaaataataaattggg
ggaacttggatagtttttaaaaagtacaacatatcatctatgccataact
gagactaaaggaaaagcacaagaaaaagagcaaaccaaaatgagacacca
aaggccaactagacagagtcacttcataagattaaaaccagcgcggattt
caacgccacatcatctcttttcctgaaaatctaataattaccaaggatct
cagatgaacttttaaagttaaacttaccattttggctggaaatgtgaatt
tcttaggctagttttcttaattactagtgagcttgggagctatggctgtg
aaaactcaatgcattcattaaactggatttaaaaaataattgtatgttta
actttaacttttgacaacttttcagcatttgaaaagttttcttgaactta
cctgatctttaagctgactgcattaaaagacacaaagcacttaaaataac
agaagttccaaatgaaggcagaagtatattttcttctaattgggatgttt
ttatcacacaggttgtatttctgtttatattcctaagctccatgccttcg
tttgtctcctgaaatggatgggtagctatctgtgtacatttgtcctcata
gagatatattattatatatcgtcatgtgatttagaaaatataaagcagct
gtctgaggattttgaaatgcgtgtcataccaaaagcatgattgcaaattc
tattagatctagaccagcagatcaaatgatgacagacatgggatggggtc
attgaaagaaatgttcagtcatgtattattctcagtttgatgacaagcat
ttttttatgttgttttagagcataatggtgtttattagaaaatgtttaga
ggccaatattttcttatgcatttagtaggccttttaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_19420846_19421953
seq2: B6Ng01-343K13.b_149_1261

seq1  AAGAAGAAGGAAGTTTGAGACCTAAAGAGGAACGAGAATCGATACTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGGAAGTTTGAGACCTAAAGAGGAACGAGAATCGATACTTAGA  50

seq1  AGTATAGATAGCTGAGTTATACCCATACACACGTATTTACAATGGCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGATAGCTGAGTTATACCCATACACACGTATTTACAATGGCCTAG  100

seq1  AGGAAAGGTGGACTATACAATAAACTAAAATAGGAACTATGGCAAGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGTGGACTATACAATAAACTAAAATAGGAACTATGGCAAGGGCA  150

seq1  TGAAGCCCTTGACCCTGGTTTCTAAGATTAAGTGTATCTTAGGTGGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCCTTGACCCTGGTTTCTAAGATTAAGTGTATCTTAGGTGGAGCC  200

seq1  CTTGTTGATTCCTGTTGTTAACAATGAATTCTATCCCAGGTGGTTCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGATTCCTGTTGTTAACAATGAATTCTATCCCAGGTGGTTCCTTT  250

seq1  AGACCTTCTGTGTTTGTATTCCTCTGTTTTATGTAAGAATCCAGTAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCTGTGTTTGTATTCCTCTGTTTTATGTAAGAATCCAGTAACCT  300

seq1  CTTTGTACCTTGCTGGTGTGTCACCCAACTTCCTTATTTTCTTCTGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTACCTTGCTGGTGTGTCACCCAACTTCCTTATTTTCTTCTGTATA  350

seq1  AAGTTTGACACTCGATTTGACAAATTACATTCAGATTCTACACAACCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGACACTCGATTTGACAAATTACATTCAGATTCTACACAACCTCT  400

seq1  CTTGTGTGCATCTGTCTGTCAATTCATCCAACACTTTGCCCACCTGCGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGCATCTGTCTGTCAATTCATCCAACACTTTGCCCACCTGCGAC  450

seq1  TAGAGACCCGTTCCTTGCAGACAAAGGGGCTCAGAGGGTCTGCGGCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCCGTTCCTTGCAGACAAAGGGGCTCAGAGGGTCTGCGGCAGAT  500

seq1  TTCCTTGTTCATCTTCCTGATGTGGATTTTATCTAAAAACACTGAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTTCATCTTCCTGATGTGGATTTTATCTAAAAACACTGAATAAT  550

seq1  AAATGCTTTGAGTTGCATTCATGTCTTCAAATATACATTTAGTATTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTTGAGTTGCATTCATGTCTTCAAATATACATTTAGTATTTATA  600

seq1  CCAATATATAGATCTTATTTTAAAAGCATATGGTAGTATTTCAGGTAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATATAGATCTTATTTTAAAAGCATATGGTAGTATTTCAGGTAGTA  650

seq1  TTTTCAGTTACCATATACACAGAATTTTCATCAAAAAGACTTAGGAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTTACCATATACACAGAATTTTCATCAAAAAGACTTAGGAAATA  700

seq1  AAAATATGTGTTGGGAGACTATTAGTCAAAAATAGAAAAGTTAAGACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTGTTGGGAGACTATTAGTCAAAAATAGAAAAGTTAAGACATA  750

seq1  AATGGTAGACATGCCTAATAGAAGAAAATTGAACCCAACTGAGACTTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGACATGCCTAATAGAAGAAAATTGAACCCAACTGAGACTTACT  800

seq1  GTGTAGCTTTCCATTCTCAGGTAAACCTTCCAAACATAAAAATGGGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTTTCCATTCTCAGGTAAACCTTCCAAACATAAAAATGGGTTTA  850

seq1  AATAATTCTCTATACAGACATAACTGCTTAAAAATAAATGTTAAAATGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCTCTATACAGACATAACTGCTTAAAAATAAATGTTAAAATGTC  900

seq1  ATTTTTTAAAATAATAGCTTGCCAACACAGAAAATGAAATTATGCAAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTTTTTAAAATAATAGCTTGCCAACACAGAAAATGAAATTATGCCAATT  950

seq1  TGTTCATTCATTATGAAACTACAG-ATGCTAATATG--TGAG-TATTCAT  996
      ||||||||||| |||||||||||| |||||||||||   ||| | |||||
seq2  TGTTCATTCATAATGAAACTACAGAATGCTAATATGGTGGAGTTTTTCAT  1000

seq1  TAAGCTTCAG-AGAAA--CAAACAGGAAAAT-GAAATACTGGCATG-TCA  1041
      |||||||||| |||||   |||| ||||||| |||||||| ||||| |||
seq2  TAAGCTTCAGAAGAAAACAAAACCGGAAAATGGAAATACT-GCATGTTCA  1049

seq1  TACCTAAGTGAACAT--TGATGCTAAAAGCCTCAGACCTAAAAGTCAGCC  1089
      |||||||||||||||  |||||||||||||||| |||||  |||||||||
seq2  TACCTAAGTGAACATTGTGATGCTAAAAGCCTCGGACCT--AAGTCAGCC  1097

seq1  GGTTTCTCTTCGCTCATTA  1108
      ||  ||||||||| |||||
seq2  GG--TCTCTTCGC-CATTA  1113


seq1: chr6_19556093_19557244
seq2: B6Ng01-343K13.g_65_1204 (reverse)

seq1  TTATTATGAGGCCTACTAAAATGCACTAAG-AAATATTTGCTTCTAAAAC  49
      ||||||  ||||||||| ||||||| |||| ||||||| || ||| ||||
seq2  TTATTAAAAGGCCTACT-AAATGCA-TAAGAAAATATTGGCCTCT-AAAC  47

seq1  ATTTTCTAATAAACACATTTATGCCTCTAAAAC-ACAT--AAAAATGCCT  96
      ||||||||||||||||  ||||| ||||||||| ||||  ||||||||  
seq2  ATTTTCTAATAAACACCATTATG-CTCTAAAACAACATAAAAAAATGC--  94

seq1  TTGTCATTCAAACTGGAGAATTATACAATTGACTGAACATTTCCTTTCAA  146
      |||||| ||||||| |||||| |||||  ||||||||||||| |||||||
seq2  TTGTCA-TCAAACT-GAGAATAATACA--TGACTGAACATTT-CTTTCAA  139

seq1  TTGACCCCATCCCATGTCTTGTCATCATTTGATCTGCCTTGGTCTAGATC  196
       ||||||||||||||||| ||||||||||||||||||  |||||||||||
seq2  -TGACCCCATCCCATGTC-TGTCATCATTTGATCTGC--TGGTCTAGATC  185

seq1  TAATAGAATTTGCAATCATGCTTTTGGTATGACACGCATTTCAAAATCCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAATAGAATTTGCAATCATGCTTTTGGTATGACACGCATTTCAAAAT-CC  234

seq1  TCAGACAGCTGCTTTATATTTTCTAAATCACATGACGATATATAATAATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGCTGCTTTATATTTTCTAAATCACATGACGATATATAATAATA  284

seq1  TATCTCTATGAGGACAAATGTACACAGATAGCTACCCATCCATTTCAGGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTATGAGGACAAATGTACACAGATAGCTACCCATCCATTTCAGGA  334

seq1  GACAAACGAAGGCATGGAGCTTAGGAATATAAACAGAAATACAACCTGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACGAAGGCATGGAGCTTAGGAATATAAACAGAAATACAACCTGTG  384

seq1  TGATAAAAACATCCCAATTAGAAGAAAATATACTTCTGCCTTCATTTGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAACATCCCAATTAGAAGAAAATATACTTCTGCCTTCATTTGGA  434

seq1  ACTTCTGTTATTTTAAGTGCTTTGTGTCTTTTAATGCAGTCAGCTTAAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTTATTTTAAGTGCTTTGTGTCTTTTAATGCAGTCAGCTTAAAG  484

seq1  ATCAGGTAAGTTCAAGAAAACTTTTCAAATGCTGAAAAGTTGTCAAAAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTAAGTTCAAGAAAACTTTTCAAATGCTGAAAAGTTGTCAAAAGT  534

seq1  TAAAGTTAAACATACAATTATTTTTTAAATCCAGTTTAATGAATGCATTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTAAACATACAATTATTTTTTAAATCCAGTTTAATGAATGCATTG  584

seq1  AGTTTTCACAGCCATAGCTCCCAAGCTCACTAGTAATTAAGAAAACTAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCACAGCCATAGCTCCCAAGCTCACTAGTAATTAAGAAAACTAGC  634

seq1  CTAAGAAATTCACATTTCCAGCCAAAATGGTAAGTTTAACTTTAAAAGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAATTCACATTTCCAGCCAAAATGGTAAGTTTAACTTTAAAAGTT  684

seq1  CATCTGAGATCCTTGGTAATTATTAGATTTTCAGGAAAAGAGATGATGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAGATCCTTGGTAATTATTAGATTTTCAGGAAAAGAGATGATGTG  734

seq1  GCGTTGAAATCCGCGCTGGTTTTAATCTTATGAAGTGACTCTGTCTAGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGAAATCCGCGCTGGTTTTAATCTTATGAAGTGACTCTGTCTAGTT  784

seq1  GGCCTTTGGTGTCTCATTTTGGTTTGCTCTTTTTCTTGTGCTTTTCCTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTGGTGTCTCATTTTGGTTTGCTCTTTTTCTTGTGCTTTTCCTTT  834

seq1  AGTCTCAGTTATGGCATAGATGATATGTTGTACTTTTTAAAAACTATCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAGTTATGGCATAGATGATATGTTGTACTTTTTAAAAACTATCCA  884

seq1  AGTTCCCCCAATTTATTATTTTTCTAGGCTTGTAGTCATTAAATTAAAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCCCAATTTATTATTTTTCTAGGCTTGTAGTCATTAAATTAAAGG  934

seq1  CAAAAATTAAAAAAAAAAGAAGTAAAGAAGAGGAGGACAGGAAGTCAGTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTAAAAAAAAAAGAAGTAAAGAAGAGGAGGACAGGAAGTCAGTG  984

seq1  AATGAAGAGAAGAAAGAGACAAGGCTGTGGAGAGAAGGGGCCAGTGACCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAGAAGAAAGAGACAAGGCTGTGGAGAGAAGGGGCCAGTGACCT  1034

seq1  TTGAAAGATAGTTACATCTATAAACTGTATAAACTGCTAAGGGAAGGGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGATAGTTACATCTATAAACTGTATAAACTGCTAAGGGAAGGGAA  1084

seq1  TGAAGGGAGGGGAGAGGAGAATAATCTTATATCAGTAGAGAATTCACAAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAGGGGAGAGGAGAATAATCTTATATCAGTAGAGAATTCACAAA  1134

seq1  GAATTC  1152
      ||||||
seq2  GAATTC  1140


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