BAC Information

Click to search

BAC

Clone NameB6Ng01-343K21
Chromosome6 (Build37)
Map Location 146,473,671 - 146,474,795
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn, Itpr2
Downstream gene4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343K21.bB6Ng01-343K21.g
ACCGA126397GA126398
length1,1041,215
definitionB6Ng01-343K21.b B6Ng01-343K21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtaaagccattgattcatttacacagcataaatttataaaagt
tcttctttatgttgatctgcagggagtctgctcagttgtatgagttaatg
cccaggaatccttagggtatataagagtgacaggaaagactacaagaaga
catcctaagataaagtctcttgggaccttgcctctcagcactcacccata
ttaagccatgcaaaaaggtgagcgactttcttggaggtcacctgttagcc
ttagcctttcctggacggctcctgacaaataaggaaagatttgttttaat
tgtgagtggcactgtcccctgagcagggctcctggggtgtatggagtgag
tggagagaactagctgagctaaccagcttgcatgtattcattgctctctg
tctctgattgcaaatgtgacatgagctacaatttccctaataagatagac
tgtgacctggaactgaagcagaaatgcacactttcctcttaagtcctttt
agtaagaacatttttcacagcaacaaaggaaaagaaactgagacggtgaa
cataggcatacatgacagaataaggggatgtggcttcttttctgctgaat
cagcatgtgttgctagtgtcttgatttccactggtttccttgaatatctc
cagggagcagttccttcctctcgcaagttttctcaatacattagctctca
aaatgatttctaactggctgttgtggctggcacatacctataatcccagc
actagggaggcagagtcaagaagcctgccagcagaccagtgggaggttga
gcagacaaagctataccatcaagcctgatgacctggatgttgggatccac
ttggggggatgggagaacagactaccataagttgtcctctaacctctgca
tgctcacaatcactcatgcacacacacccccatagagtaaataaataaat
taaatgtaattttttaaaaagatttccacaggttcaaggccagcctagac
atatatagtggagtttgaagaacaccaggctacagatcaaggatcttgtc
taaagaacaaagccaaaagtgcttgggtatcaaaccaggagcaccagtga
cctg
gaattccaggccagcctgaggtatgtgagaacctatctcaaatgaattgc
tacattaatttttcacttggaattagaacagaatattcaacaacttctga
aactgccctaatatatccctgctattttacattatgtatttaggtgaagt
gtggggcattgggctctgcacagacaggctggtctccagttgagctgagg
tctgaacctcgaggtcataattcacctaaatgacacggtaggggtaggtg
gccccttattctcctggaactctggctcctgcctaagttaccgaccccca
cagcccccacaagagaagcatggctagaagtcacataggcaatggcccaa
gcttctgaccttcaggctaaactcctccccagttacctagcaacagtaaa
gaccataaaaagggctgttcagcccctgcttgctctcttacttgtctctc
ttacttctcactctcttactccttacccctctctctcaccctctcctctc
ctctcccctctcccccttactctagcctttcctctatctctcttttctac
cttctctctttccccctgcctttctacaataaagctctaaaaccatagac
agtttctgctctagtcaaaatccgctgcgctcactctcttcagtgttggg
aacctctttgctcatccctctctcccctaaccccggaggctttagcaaag
tagttccagggttcccaggtagggctgcctcttggccaccccctgaagag
tgggtcagaggcttgaatgcccacccagggatgagtggaaagtgtatggc
agctctcccatgcctgacagaccagagaataggtaaaactctggcggggt
gtggattttcccccctctccccctgggccccctttttagttcccgacagt
gaagtgccattcttgtttataaaatcaaatattgatcaactctgaagaac
agtgagccatatccttacacatcgtatatctagccagggatttaattctt
tattctaaaataatgcattcatctattggattagatgtaaatttcttttt
gtctttagcaaatggcaaaaggtattcttaataaaaaagaattgttttaa
ttttaccttcgttttaatattgtaatactaaatggtttggcaaccaattt
aatgccatactaattatcctttgggattgggttaaaaaataatctctgta
gaggcgcaggagtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_146473671_146474795
seq2: B6Ng01-343K21.b_92_1150

seq1  AAAGTTCTTCTTTATGTTGATCTGCAGGGAGTCTGCTCAGTTGTATGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTTCTTTATGTTGATCTGCAGGGAGTCTGCTCAGTTGTATGAGT  50

seq1  TAATGCCCAGGAATCCTTAGGGTATATAAGAGTGACAGGAAAGACTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCCAGGAATCCTTAGGGTATATAAGAGTGACAGGAAAGACTACAA  100

seq1  GAAGACATCCTAAGATAAAGTCTCTTGGGACCTTGCCTCTCAGCACTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATCCTAAGATAAAGTCTCTTGGGACCTTGCCTCTCAGCACTCAC  150

seq1  CCATATTAAGCCATGCAAAAAGGTGAGCGACTTTCTTGGAGGTCACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTAAGCCATGCAAAAAGGTGAGCGACTTTCTTGGAGGTCACCTGT  200

seq1  TAGCCTTAGCCTTTCCTGGACGGCTCCTGACAAATAAGGAAAGATTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTAGCCTTTCCTGGACGGCTCCTGACAAATAAGGAAAGATTTGTT  250

seq1  TTAATTGTGAGTGGCACTGTCCCCTGAGCAGGGCTCCTGGGGTGTATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTGAGTGGCACTGTCCCCTGAGCAGGGCTCCTGGGGTGTATGGA  300

seq1  GTGAGTGGAGAGAACTAGCTGAGCTAACCAGCTTGCATGTATTCATTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGGAGAGAACTAGCTGAGCTAACCAGCTTGCATGTATTCATTGCT  350

seq1  CTCTGTCTCTGATTGCAAATGTGACATGAGCTACAATTTCCCTAATAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTGATTGCAAATGTGACATGAGCTACAATTTCCCTAATAAGA  400

seq1  TAGACTGTGACCTGGAACTGAAGCAGAAATGCACACTTTCCTCTTAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGTGACCTGGAACTGAAGCAGAAATGCACACTTTCCTCTTAAGTC  450

seq1  CTTTTAGTAAGAACATTTTTCACAGCAACAAAGGAAAAGAAACTGAGACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTAAGAACATTTTTCACAGCAACAAAGGAAAAGAAACTGAGACG  500

seq1  GTGAACATAGGCATACATGACAGAATAAGGGGATGTGGCTTCTTTTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATAGGCATACATGACAGAATAAGGGGATGTGGCTTCTTTTCTGC  550

seq1  TGAATCAGCATGTGTTGCTAGTGTCTTGATTTCCACTGGTTTCCTTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAGCATGTGTTGCTAGTGTCTTGATTTCCACTGGTTTCCTTGAAT  600

seq1  ATCTCCAGGGAGCAGTTCCTTCCTCTCGCAAGTTTTCTCAATACATTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAGGGAGCAGTTCCTTCCTCTCGCAAGTTTTCTCAATACATTAGC  650

seq1  TCTCAAAATGATTTCTAACTGGCTGTTGTGGCTGGCACATACCTATAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAATGATTTCTAACTGGCTGTTGTGGCTGGCACATACCTATAATC  700

seq1  CCAGCACTAGGGAGGCAGAGTCAAGAAGCCTGCCAGCAGACCAGTGGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTAGGGAGGCAGAGTCAAGAAGCCTGCCAGCAGACCAGTGGGAG  750

seq1  GTTGAGCAGACAAAGCTATACCATCAAGCCTGATGACCTGGATGTTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCAGACAAAGCTATACCATCAAGCCTGATGACCTGGATGTTGGGA  800

seq1  TCCACTTGGGGGGATGGGAGAACAGACTACCATAAGTTGTCCTCTAACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTGGGGGGATGGGAGAACAGACTACCATAAGTTGTCCTCTAACCT  850

seq1  CTGCATGCTCACAATCACTCATGCACACACACCCCCATAGAGTAAATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGCTCACAATCACTCATGCACACACACCCCCATAGAGTAAATAAA  900

seq1  TAAA-TAAATGTAATTTTTTAAAAAAGATTTCCACAGGTTCAAGGCCAGC  949
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAAATTAAATGTAATTTTTT-AAAAAGATTTCCACAGGTTCAAGGCCAGC  949

seq1  CTAGACATATATAGT-GAGTTTG-AGAACACCCAGGGCTACAGAACAA-G  996
      ||||||||||||||| ||||||| ||||||||   ||||||||| ||| |
seq2  CTAGACATATATAGTGGAGTTTGAAGAACACC--AGGCTACAGATCAAGG  997

seq1  ACCTTGTCTCAGAGAACAAAAGCAAAATGTGC-TGGGTATCAATACCAGG  1045
      | ||||||| | ||||| ||||| ||| |||| |||||||||| ||||||
seq2  ATCTTGTCT-AAAGAAC-AAAGCCAAAAGTGCTTGGGTATCAA-ACCAGG  1044

seq1  AGCACCAG-GACACTGGTCAGAAGTGTGAATTGTTGGCCTCAGCCAAAAT  1094
      |||||||| ||| |||                                  
seq2  AGCACCAGTGAC-CTG----------------------------------  1059

seq1  GTAGCAGAAACTGGTGGGGACCAGTGACCTG  1125
                                     
seq2  -------------------------------  1059