BAC Information

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BAC

Clone NameB6Ng01-343P14
Chromosome6 (Build37)
Map Location 15,763,551 - 15,893,905
singlet/doubletdoublet
Overlap genenone
Upstream geneFoxp2, LOC100040568, Mdfic
Downstream geneLOC100041116, Tcfec, EG435881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343P14.bB6Ng01-343P14.g
ACCGA126601GA126602
length1,1931,153
definitionB6Ng01-343P14.b B6Ng01-343P14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,892,708 - 15,893,905)(15,763,551 - 15,764,731)
sequence
gaattctctaaaaaaaaaaaaaagacattataaaatatactaaatgatgc
attcaagattcccttaccctctctggaacatgtctgagtttgacaaactg
tttgaaattatcaattcaatgatgcccttaacaggggttagctttagtgt
atatttaaaatacattcaagacacaagtcttttctgctacaagaactaca
ggaagctccatttaacatcagcaagatgactgaagtggcttaaattattc
tccatatgcacctcacatttccacaacttcagggtatttttaaacattct
tgctacatgatgtacaatttgcttagtacgtggcattcataggtctagcc
atacaataacttgttgtaatttaagcaaacatgttttaaataaaaggtag
ctaaagtctgtaatctctgatgtatcacatgtagtgaaagcttccataaa
aatggatttcccaggcagccaaagatcatagtttccccttaagaaatatc
ataatttatgttttcccctcatgtattttagtatatctttactgactagt
ttcaccaatgatgtgatatccttgaaaaattagactaaaaatagagagaa
agaaggaaaaaaacttactttcttcctatatttttaatttccaaatatta
gcaattaatgtaatggccaggacttgcatagtcaattaaagaaaaataaa
ttttgtaagttgattgatatgcagtttattgtgtatgtttaaggggaaac
ttttgataagtttagatgaaaagtgagtagtaaaactatcatcaaaaaca
agaaaatgaaaatattaccattccaaatttttccttgcactacttgcaaa
ttaatctctaccagttctccgcatagtaaatgttctctccttacgtgtaa
aaatggaggaaaacatgatccacaaggtttgtattaagaaatgcaaataa
cctgccctgagagagtactggctttcctcccatatatctagaattgtaca
taaatgcatcatggagctcacagacttcttttttatcatctcctttattc
tcatgcagttactgtgaaagtcacacaatatttcacttctgtcatgtgat
actcatttatcagtattctatatttgtttactatccacctgctgatgcca
ttggattgcctaatcagtggccagtgaacattttcggtgtgtg

gaattctattaagaatttgctgcacacattttccggtggagacatggcca
catgataggcttcttatatccatagcaactttgaaagtctaagatgaaga
ataaagactactgcttaataataccatagggcacagccacagaggcaaga
ttgtgagccaggttcacagtttaactaccataaaaattagctgccgcttt
catttgagaaacatggtagataaaagcagtttcaatatcccaccattaca
ttaatgtagatatcatacagatatattaaaattttccctctcaacaccag
gcactaagaaagtagtaaaagtattatgtttgcatgcaataatttgacgt
gtagtctgggaaatatatgaaatgttatatttttaaaggagttgccttat
gaaaaaatcatatttgagggagtgtggaatcaattctcaggaatagttta
tggtccaggaattcctataaagtaacgggaagaactagtatgtgtgtgat
catatgtatttttatatttatatataaataagaaattaatttcttacagt
aaatttcaccaagaacgaagaatggaaagcatgctttccaagcttatatt
tccaatgtgtcactattgctcgcttactttaaaagttacgcatataacat
tttgtaatgtgcactttgaatcttctttccacttcactaaacaaaaattc
cacccctcttgggtgagctacgtgagtacatgcacacatctgtgtgtata
tctttgtttccttgttacattatcccagaacctgccctgcatggtggata
tgaagaaagtttgctggcatttctgtagaaatatgtgagaaatctcattc
tttcttcccaagagatgagatctgtgttaaaatagctcagttatacagag
aacatgggcagatagagaacagattaaaagtgatcatactgtgctcagca
aatactgtcaaagtcattgtagtatattgggggagaaaaaaattcacaga
gctcaaatgtagtacatagactagcagtattgtgagctgcagcgaggtta
cactgtgctcagagaaaataggctttattagagattagactctcttccta
gggattcgatcgacggtatagctgtatctctccaagttgaccacttttat
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15892708_15893905
seq2: B6Ng01-343P14.b_48_1240 (reverse)

seq1  --CACACAG-AAATGTTCACTGCCACCTGATTTAGCAACTCAAATGTGCA  47
        ||||| | |||||||||||| |  ||||||  |||| || |||| |||
seq2  CACACACCGAAAATGTTCACTGGCCACTGATTAGGCAA-TCCAATG-GCA  48

seq1  TCAGCAGGT-GATAGGTAAACAAAATATAGAATACTGGATAAAATGAAGT  96
      ||||||||| |||| |||||| |||||||||||||| ||| ||||| |||
seq2  TCAGCAGGTGGATA-GTAAAC-AAATATAGAATACT-GAT-AAATG-AGT  93

seq1  ATCACATGACAG-AGTGAAATATTGGTGTGACTTTCACAGTAACTGCATG  145
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  ATCACATGACAGAAGTGAAATATT-GTGTGACTTTCACAGTAACTGCATG  142

seq1  AGAATAAAGGAGATGGATAAAAAGAAGTCTGTGAGCTCCATGATTGCATT  195
      |||||||||||||||   ||||||||||||||||||||||||| ||||||
seq2  AGAATAAAGGAGATGATAAAAAAGAAGTCTGTGAGCTCCATGA-TGCATT  191

seq1  TATGTACAATTCTAGATATATGGGAGGAAAGCCAGTACTCTCTCAGGGCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACAATTCTAGATATATGGGAGGAAAGCCAGTACTCTCTCAGGGCA  241

seq1  GGTTATTTGCATTTCTTAATACAAACCTTTGTGGATCATGTTTTCCTCCA  295
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTTATTTGCATTTCTTAATACAAACC-TTGTGGATCATGTTTTCCTCCA  290

seq1  TTTTTACACGTAAGGAGAGAACATTTACTATGCGGAGAACTGGTAGAGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACACGTAAGGAGAGAACATTTACTATGCGGAGAACTGGTAGAGAT  340

seq1  TAATTTGCAAGTAGTGCAAGGAAAAATTTGGAATGGTAATATTTTCATTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCAAGTAGTGCAAGGAAAAATTTGGAATGGTAATATTTTCATTT  390

seq1  TCTTGTTTTTGATGATAGTTTTACTACTCACTTTTCATCTAAACTTATCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTTTGATGATAGTTTTACTACTCACTTTTCATCTAAACTTATCA  440

seq1  AAAGTTTCCCCTTAAACATACACAATAAACTGCATATCAATCAACTTACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCCCCTTAAACATACACAATAAACTGCATATCAATCAACTTACA  490

seq1  AAATTTATTTTTCTTTAATTGACTATGCAAGTCCTGGCCATTACATTAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATTTTTCTTTAATTGACTATGCAAGTCCTGGCCATTACATTAAT  540

seq1  TGCTAATATTTGGAAATTAAAAATATAGGAAGAAAGTAAGTTTTTTTCCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATATTTGGAAATTAAAAATATAGGAAGAAAGTAAGTTTTTTTCCT  590

seq1  TCTTTCTCTCTATTTTTAGTCTAATTTTTCAAGGATATCACATCATTGGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTCTATTTTTAGTCTAATTTTTCAAGGATATCACATCATTGGT  640

seq1  GAAACTAGTCAGTAAAGATATACTAAAATACATGAGGGGAAAACATAAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAGTCAGTAAAGATATACTAAAATACATGAGGGGAAAACATAAAT  690

seq1  TATGATATTTCTTAAGGGGAAACTATGATCTTTGGCTGCCTGGGAAATCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATATTTCTTAAGGGGAAACTATGATCTTTGGCTGCCTGGGAAATCC  740

seq1  ATTTTTATGGAAGCTTTCACTACATGTGATACATCAGAGATTACAGACTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGGAAGCTTTCACTACATGTGATACATCAGAGATTACAGACTT  790

seq1  TAGCTACCTTTTATTTAAAACATGTTTGCTTAAATTACAACAAGTTATTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACCTTTTATTTAAAACATGTTTGCTTAAATTACAACAAGTTATTG  840

seq1  TATGGCTAGACCTATGAATGCCACGTACTAAGCAAATTGTACATCATGTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTAGACCTATGAATGCCACGTACTAAGCAAATTGTACATCATGTA  890

seq1  GCAAGAATGTTTAAAAATACCCTGAAGTTGTGGAAATGTGAGGTGCATAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATGTTTAAAAATACCCTGAAGTTGTGGAAATGTGAGGTGCATAT  940

seq1  GGAGAATAATTTAAGCCACTTCAGTCATCTTGCTGATGTTAAATGGAGCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATAATTTAAGCCACTTCAGTCATCTTGCTGATGTTAAATGGAGCT  990

seq1  TCCTGTAGTTCTTGTAGCAGAAAAGACTTGTGTCTTGAATGTATTTTAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAGTTCTTGTAGCAGAAAAGACTTGTGTCTTGAATGTATTTTAAA  1040

seq1  TATACACTAAAGCTAACCCCTGTTAAGGGCATCATTGAATTGATAATTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTAAAGCTAACCCCTGTTAAGGGCATCATTGAATTGATAATTTC  1090

seq1  AAACAGTTTGTCAAACTCAGACATGTTCCAGAGAGGGTAAGGGAATCTTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTTGTCAAACTCAGACATGTTCCAGAGAGGGTAAGGGAATCTTG  1140

seq1  AATGCATCATTTAGTATATTTTATAATGTCTTTTTTTTTTTTTTAGAGAA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATCATTTAGTATATTTTATAATGTCTTTTTTTTTTTTTTAGAGAA  1190

seq1  TTC  1198
      |||
seq2  TTC  1193


seq1: chr6_15763551_15764731
seq2: B6Ng01-343P14.g_66_1218

seq1  GAATTCTATTAAGAATTTGCTGCACACATTTTCCGGTGGAGACATGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAAGAATTTGCTGCACACATTTTCCGGTGGAGACATGGCCA  50

seq1  CATGATAGGCTTCTTATATCCATAGCAACTTTGAAAGTCTAAGATGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAGGCTTCTTATATCCATAGCAACTTTGAAAGTCTAAGATGAAGA  100

seq1  ATAAAGACTACTGCTTAATAATACCATAGGGCACAGCCACAGAGGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACTACTGCTTAATAATACCATAGGGCACAGCCACAGAGGCAAGA  150

seq1  TTGTGAGCCAGGTTCACAGTTTAACTACCATAAAAATTAGCTGCCGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCCAGGTTCACAGTTTAACTACCATAAAAATTAGCTGCCGCTTT  200

seq1  CATTTGAGAAACATGGTAGATAAAAGCAGTTTCAATATCCCACCATTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGAAACATGGTAGATAAAAGCAGTTTCAATATCCCACCATTACA  250

seq1  TTAATGTAGATATCATACAGATATATTAAAATTTTCCCTCTCAACACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTAGATATCATACAGATATATTAAAATTTTCCCTCTCAACACCAG  300

seq1  GCACTAAGAAAGTAGTAAAAGTATTATGTTTGCATGCAATAATTTGACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAAGAAAGTAGTAAAAGTATTATGTTTGCATGCAATAATTTGACGT  350

seq1  GTAGTCTGGGAAATATATGAAATGTTATATTTTTAAAGGAGTTGCCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTGGGAAATATATGAAATGTTATATTTTTAAAGGAGTTGCCTTAT  400

seq1  GAAAAAATCATATTTGAGGGAGTGTGGAATCAATTCTCAGGAATAGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATCATATTTGAGGGAGTGTGGAATCAATTCTCAGGAATAGTTTA  450

seq1  TGGTCCAGGAATTCCTATAAAGTAACGGGAAGAACTAGTATGTGTGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGGAATTCCTATAAAGTAACGGGAAGAACTAGTATGTGTGTGAT  500

seq1  CATATGTATTTTTATATTTATATATAAATAAGAAATTAATTTCTTACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATTTTTATATTTATATATAAATAAGAAATTAATTTCTTACAGT  550

seq1  AAATTTCACCAAGAACGAAGAATGGAAAGCATGCTTTCCAAGCTTATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCACCAAGAACGAAGAATGGAAAGCATGCTTTCCAAGCTTATATT  600

seq1  TCCAATGTGTCACTATTGCTCGCTTACTTTAAAAGTTACGCATATAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGTGTCACTATTGCTCGCTTACTTTAAAAGTTACGCATATAACAT  650

seq1  TTTGTAATGTGCACTTTGAATCTTCTTTCCACTTCACTAAACAAAAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATGTGCACTTTGAATCTTCTTTCCACTTCACTAAACAAAAATTC  700

seq1  CACCCCTCTTGGGTGAGCTACGTGAGTACATGCACACATCTGTGTGTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTCTTGGGTGAGCTACGTGAGTACATGCACACATCTGTGTGTATA  750

seq1  TCTTTGTTTCCTTGTTACATTATCCCAGAACCTGCCCTGCATGGTGGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTCCTTGTTACATTATCCCAGAACCTGCCCTGCATGGTGGATA  800

seq1  TGAAGAAAGTTTGCTGGCATTTCTGTAGAAATATGTGAGAAATCTCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAGTTTGCTGGCATTTCTGTAGAAATATGTGAGAAATCTCATTC  850

seq1  TTTCTTCCCAAGAGATGAGATCTGTGTTAAAATAGCTCAGTTATACAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCCAAGAGATGAGATCTGTGTTAAAATAGCTCAGTTATACAGAG  900

seq1  AACATGGGCAGATAGAGAACAGATTAAAAGTGATCATACTGTGCTCAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGGCAGATAGAGAACAGATTAAAAGTGATCATACTGTGCTCAGCA  950

seq1  AATACTGTCAAAGGCCATTGGTAGTATATTGGGGAAGAAAAAAAATTCCA  1000
      |||||||||||| | |||| |||||||||||||| |||||||||  | ||
seq2  AATACTGTCAAA-GTCATT-GTAGTATATTGGGGGAGAAAAAAA--TTCA  996

seq1  CAGAAGCTCAAATTGTAGTACAATAGACTAGCAAGTATTGTGAGGCTGCA  1050
      ||| |||||||| |||||||| |||||||||| |||||||||| ||||||
seq2  CAG-AGCTCAAA-TGTAGTAC-ATAGACTAGC-AGTATTGTGA-GCTGCA  1041

seq1  GCGAGGGTACACTGTGCTCAGGAGGAAAAATAGGCTTTTATTAGAGATAA  1100
      |||||| ||||||||||||| |||  ||||||||| |||||||||||| |
seq2  GCGAGGTTACACTGTGCTCA-GAG--AAAATAGGC-TTTATTAGAGATTA  1087

seq1  GACATCTCCCTTTCCTTAGGAATTCAGAAATTTGGGACAGTGTAATAGTC  1150
      ||| ||||   |||| |||| |||| ||       ||| ||   |||| |
seq2  GAC-TCTC---TTCC-TAGGGATTC-GA-----TCGACGGT---ATAG-C  1122

seq1  TGTTATCTCTCCAACATGACCAC-TTTATTAA  1181
      || |||||||||||  ||||||| ||||||||
seq2  TG-TATCTCTCCAAGTTGACCACTTTTATTAA  1153


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