BAC Information

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BAC

Clone NameB6Ng01-344C10
Chromosome6 (Build37)
Map Location 8,065,454 - 8,205,609
singlet/doubletdoublet
Overlap geneCol28a1, BC020002
Upstream geneEG667500, Tac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661
Downstream geneRpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344C10.bB6Ng01-344C10.g
ACCGA126729GA126730
length1,080945
definitionB6Ng01-344C10.b B6Ng01-344C10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,065,454 - 8,066,261)(8,204,831 - 8,205,609)
sequence
gaattcaatttaaattgcaatgcttatgggaaacctagcttttaactccc
aaactttaatcaaaagtctaatatttatcagtttgctctaatggccaagc
aattaattagagggggaaaatttaagtgagcataaaaactagattgcaaa
ctaagaagtgccgagttcatatcagtaactttaacaacaaaagcattgac
tcttttctaatggtagaacaaatgaaaaccacaattacattaaataagaa
gaatgtctatatttgagcccactcattcattcaataaacatttacaaaat
ctattagtgtgattcctgttggtgtgataaaacttcattgccataagcaa
tttgagaggaaagatttactttgcttgcaaattacagtccattatcaagg
accgctatggtgtcagctcaaggcagaaacctgaaagcaggtactgaagc
ataaaccaccttgaagcataaacaaaccagtaaatggcttgttttgtttc
ctctgcctttcttatatagcttagactcacttgtgtagggatggcaccgc
ccacagtggtctgagcactcctacttcaattagcaactaggaaaacgccc
ccacagaccaatctaatgggaaaagtcccttaactgaggttcccttttcc
tagatgactccagtttgtgtctagtcggcacaaattaagcagctctactg
actccatgtcaacctggcacacaaacacatcactattaaatcatcggctt
tccttcattctttgttctcaagagctcatgttactatcacaatataaaac
actctcaacatttaaaattcccagtctttctataatattcaacaaatcga
agttctccttagatttctaaaaccttttaatggtaggctcttctaaactc
caaaataagttatgtactatttttattctaagaaggaagaactagagcac
agtcgcactcagatcacagcaaaaccaagttcagcagtgtagtccacatc
ctgtagatgtgtgtctgacatttgccacttgtgatctggatgccacagta
tgtgggcagtccacccctcagctctggcat

gaattctcatctaacatttttagggcctgaatattggaatgtcttcccac
aggtcaaactaatttgagagattctggagactttagatatgaaagaagta
tgtcactggagggttgcctttcagggttctagctggtctctgatcccttc
ctcactttgctgcttcttcaccccagtgttatgaatctctcttttctccc
atcccctgtcatctctaaggtactaagccctctgaaagcatgaatcagct
ctccttttaagttgtgaatatcaagtgttttgtcacaatgataaaatagt
tatttatacacacacacatacaagtggagtcagagaagtagggtgattac
tatgagaaatctgtgtggttcttaaatcttaagaatggattcaggagaag
aatttgcaaggtttggagaactgagaagagaagtcctagcacattgtgag
ctaataataatgtaataattaataatgtaatgcataatggctggaacttg
aaagaccaaaatgctgataggaataaggactgctcataagatttcaggta
gatttgagactgttgggaattagactggaaaaacattctgtgaaaggatt
tgcctagatttttgtctatgtcccgagacaaagtgaggttaaattcaaaa
tgaagacattaatttggaaaaaaatttttagacagattaagattcaggct
gtgatgtgttcattgtacatctttttgctgggtttacagtaagaactaga
gtaaaaagtaatgttgaaaactgtagtttggccagaagggaatgtttcaa
gtgggcacaaagggtatacgtagttgttcagagcttagcaccaggaaaaa
gaaagcaaattcttttcattgggatagtgggagagataccattagggcat
cacagaataatgtttttgactcattgggaaggttttccattaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8065454_8066261
seq2: B6Ng01-344C10.b_44_851

seq1  GAATTCAATTTAAATTGCAATGCTTATGGGAAACCTAGCTTTTAACTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAAATTGCAATGCTTATGGGAAACCTAGCTTTTAACTCCC  50

seq1  AAACTTTAATCAAAAGTCTAATATTTATCAGTTTGCTCTAATGGCCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTAATCAAAAGTCTAATATTTATCAGTTTGCTCTAATGGCCAAGC  100

seq1  AATTAATTAGAGGGGGAAAATTTAAGTGAGCATAAAAACTAGATTGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTAGAGGGGGAAAATTTAAGTGAGCATAAAAACTAGATTGCAAA  150

seq1  CTAAGAAGTGCCGAGTTCATATCAGTAACTTTAACAACAAAAGCATTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGTGCCGAGTTCATATCAGTAACTTTAACAACAAAAGCATTGAC  200

seq1  TCTTTTCTAATGGTAGAACAAATGAAAACCACAATTACATTAAATAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTAATGGTAGAACAAATGAAAACCACAATTACATTAAATAAGAA  250

seq1  GAATGTCTATATTTGAGCCCACTCATTCATTCAATAAACATTTACAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCTATATTTGAGCCCACTCATTCATTCAATAAACATTTACAAAAT  300

seq1  CTATTAGTGTGATTCCTGTTGGTGTGATAAAACTTCATTGCCATAAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGTGTGATTCCTGTTGGTGTGATAAAACTTCATTGCCATAAGCAA  350

seq1  TTTGAGAGGAAAGATTTACTTTGCTTGCAAATTACAGTCCATTATCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGGAAAGATTTACTTTGCTTGCAAATTACAGTCCATTATCAAGG  400

seq1  ACCGCTATGGTGTCAGCTCAAGGCAGAAACCTGAAAGCAGGTACTGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTATGGTGTCAGCTCAAGGCAGAAACCTGAAAGCAGGTACTGAAGC  450

seq1  ATAAACCACCTTGAAGCATAAACAAACCAGTAAATGGCTTGTTTTGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCACCTTGAAGCATAAACAAACCAGTAAATGGCTTGTTTTGTTTC  500

seq1  CTCTGCCTTTCTTATATAGCTTAGACTCACTTGTGTAGGGATGGCACCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTTCTTATATAGCTTAGACTCACTTGTGTAGGGATGGCACCGC  550

seq1  CCACAGTGGTCTGAGCACTCCTACTTCAATTAGCAACTAGGAAAACGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGGTCTGAGCACTCCTACTTCAATTAGCAACTAGGAAAACGCCC  600

seq1  CCACAGACCAATCTAATGGGAAAAGTCCCTTAACTGAGGTTCCCTTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACCAATCTAATGGGAAAAGTCCCTTAACTGAGGTTCCCTTTTCC  650

seq1  TAGATGACTCCAGTTTGTGTCTAGTCGGCACAAATTAAGCAGCTCTACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGACTCCAGTTTGTGTCTAGTCGGCACAAATTAAGCAGCTCTACTG  700

seq1  ACTCCATGTCAACCTGGCACACAAACACATCACTATTAAATCATCGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGTCAACCTGGCACACAAACACATCACTATTAAATCATCGGCTT  750

seq1  TCCTTCATTCTTTGTTCTCAAGAGCTCATGTTACTATCACAATATAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATTCTTTGTTCTCAAGAGCTCATGTTACTATCACAATATAAAAC  800

seq1  ACTCTCAA  808
      ||||||||
seq2  ACTCTCAA  808


seq1: chr6_8204831_8205609
seq2: B6Ng01-344C10.g_65_843 (reverse)

seq1  AAACTACAGTTTTCAACATTACTTTTTACTCTAGTTCTTACTGTAAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACAGTTTTCAACATTACTTTTTACTCTAGTTCTTACTGTAAACCC  50

seq1  AGCAAAAAGATGTACAATGAACACATCACAGCCTGAATCTTAATCTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAAGATGTACAATGAACACATCACAGCCTGAATCTTAATCTGTCT  100

seq1  AAAAATTTTTTTCCAAATTAATGTCTTCATTTTGAATTTAACCTCACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTTTTCCAAATTAATGTCTTCATTTTGAATTTAACCTCACTTT  150

seq1  GTCTCGGGACATAGACAAAAATCTAGGCAAATCCTTTCACAGAATGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGGGACATAGACAAAAATCTAGGCAAATCCTTTCACAGAATGTTTT  200

seq1  TCCAGTCTAATTCCCAACAGTCTCAAATCTACCTGAAATCTTATGAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTAATTCCCAACAGTCTCAAATCTACCTGAAATCTTATGAGCAG  250

seq1  TCCTTATTCCTATCAGCATTTTGGTCTTTCAAGTTCCAGCCATTATGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATTCCTATCAGCATTTTGGTCTTTCAAGTTCCAGCCATTATGCAT  300

seq1  TACATTATTAATTATTACATTATTATTAGCTCACAATGTGCTAGGACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATTAATTATTACATTATTATTAGCTCACAATGTGCTAGGACTTC  350

seq1  TCTTCTCAGTTCTCCAAACCTTGCAAATTCTTCTCCTGAATCCATTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCAGTTCTCCAAACCTTGCAAATTCTTCTCCTGAATCCATTCTTA  400

seq1  AGATTTAAGAACCACACAGATTTCTCATAGTAATCACCCTACTTCTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAGAACCACACAGATTTCTCATAGTAATCACCCTACTTCTCTGA  450

seq1  CTCCACTTGTATGTGTGTGTGTATAAATAACTATTTTATCATTGTGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTGTATGTGTGTGTGTATAAATAACTATTTTATCATTGTGACAA  500

seq1  AACACTTGATATTCACAACTTAAAAGGAGAGCTGATTCATGCTTTCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGATATTCACAACTTAAAAGGAGAGCTGATTCATGCTTTCAGAG  550

seq1  GGCTTAGTACCTTAGAGATGACAGGGGATGGGAGAAAAGAGAGATTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGTACCTTAGAGATGACAGGGGATGGGAGAAAAGAGAGATTCATA  600

seq1  ACACTGGGGTGAAGAAGCAGCAAAGTGAGGAAGGGATCAGAGACCAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGGTGAAGAAGCAGCAAAGTGAGGAAGGGATCAGAGACCAGCTA  650

seq1  GAACCCTGAAAGGCAACCCTCCAGTGACATACTTCTTTCATATCTAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTGAAAGGCAACCCTCCAGTGACATACTTCTTTCATATCTAAAGT  700

seq1  CTCCAGAATCTCTCAAATTAGTTTGACCTGTGGGAAGACATTCCAATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAATCTCTCAAATTAGTTTGACCTGTGGGAAGACATTCCAATATT  750

seq1  CAGGCCCTAAAAATGTTAGATGAGAATTC  779
      |||||||||||||||||||||||||||||
seq2  CAGGCCCTAAAAATGTTAGATGAGAATTC  779


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