BAC Information

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BAC

Clone NameB6Ng01-344F01
Chromosome6 (Build37)
Map Location 29,230,301 - 29,343,164
singlet/doubletdoublet
Overlap geneAI507611, BC048651, Calu, Opn1sw, 4921511K06Rik
Upstream geneLOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik
Downstream geneFlnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344F01.bB6Ng01-344F01.g
ACCGA126837GA126838
length8791,120
definitionB6Ng01-344F01.b B6Ng01-344F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,230,301 - 29,231,177)(29,342,044 - 29,343,164)
sequence
gaattccaggacagccagggctacacaggaagaccctgtctccaacaaac
aaaaatagaagtaaattaacagtaagatctggttctgtggtagaattcct
aacacacccagtcaaaatattttacagtttcttaaattgatgtgtccctt
ttcaaatgtgtttattgaccaggtggtggcacgagtctttaatccatcca
cttgggaggcagaagtatggggccctctgagtttctggggcatccaggac
aacatactcaactatatgataaaaagaagaaaactataaatactttgaag
tttctctccaaaaagtttttctagttggaaagaaaatgtgtgtgagtgag
ggatgcataaagcagtgtgcacaagaggtcagaggacttgagagtcagtt
ttttccttctgtcacttccatcttgggagtctttaaactcctatcaggct
tggcagcaagcgttttttgccagctgagccatcctgccgaccccccctcc
ctcccgaagcctgactttaggtaaacaatttgaacttacaaagagctttt
gtgtgaggcttccagttatgaaagaggatcaatgcctgtgattttcccag
agtccttcgttggcggacctggccagccagctcactgtctggggaaggtc
atcgctcggctgcctggggtaagggccagtgtatagaatctggaagttta
cagctggtttgtgatcatctcccagtcctgtgtaccccttccttggcctc
ctccccctttcctactgttagcctttttttgatgtcactcctgccattgt
gagctgacaggccctcccagccctgggaggacatgcgaaaccataagcat
cagggagctggagctgggaggtggggggg
gaattccttgattgccatcttaagcctatgtataatggttaaaattggag
atgtgtgagaaataattatatgacttaatttattaatcaaaagagagaac
aactttatacacttcagtaaccaaacttcttttcttgaacaccataacaa
gatgcctcctgtcataactggagcctgtgaacggtttctcacccctgtgt
acccctgatccctactctgtgtctctccctgctttatactgtttactttc
cttttgaataaaatttccttgctactttgcaaatctgtgtcagcctttat
ttgaagtagaagcctaaaatatcgaaaacccaaccctgaccactaggaac
aatcccatggtttgaaagctgtactttatatgtatataagtcacaaaaaa
ttacataattttgatttgtgtggtttcaacatccgtcaagtgttacataa
tccactttcatcagctagccttaaagttttacgtatccaccgtgttttac
atagttctgttcatcctctagtgagcatctgggctccttgcagttttcta
taacaaagtaaatgctgcaactggcaattctatatatgccttcccggccc
ttgtggcagacattccaagggcaagtaactagaggggaatttctgggaca
aggaataggtgcctctaaatttactaactgttgctaagttagtctgtaaa
gtagaggtgttgctaagttagtctgtaaagtagaggtgttgctaagttag
tctgtaaagtagcggtgccaattaaatgccactgattgtggatttattta
tcttctttatttcctgtctcccagtggtgcaaagctgcatatgctagtag
tctccttgtacatttttcttcaccctcactctttggagacagggtctcac
tgtatagctaagcagctgtgtagctcattggttagcctagagcccactat
gtagaccaagctgggttcaatgtacagagatctgtctgtctctgctcttg
attagaggtggtgccaccgctgtgcacccattttccctggatcttagtca
ccatgcttttctagtaaatagaaagccgcgtagaaacaacttcaactctc
tttccctgtccttccacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29230301_29231177
seq2: B6Ng01-344F01.b_50_928

seq1  GAATTCCAGGACAGCCAGGGCTACACAGGAAGACCCTGTCTCCAACAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGGAAGACCCTGTCTCCAACAAAC  50

seq1  AAAAATAGAAGTAAATTAACAGTAAGATCTGGTTCTGTGGTAGAATTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGAAGTAAATTAACAGTAAGATCTGGTTCTGTGGTAGAATTCCT  100

seq1  AACACACCCAGTCAAAATATTTTACAGTTTCTTAAATTGATGTGTCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACCCAGTCAAAATATTTTACAGTTTCTTAAATTGATGTGTCCCTT  150

seq1  TTCAAATGTGTTTATTGACCAGGTGGTGGCACGAGTCTTTAATCCATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGTGTTTATTGACCAGGTGGTGGCACGAGTCTTTAATCCATCCA  200

seq1  CTTGGGAGGCAGAAGTATGGGGCCCTCTGAGTTTCTGGGGCATCCAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGGCAGAAGTATGGGGCCCTCTGAGTTTCTGGGGCATCCAGGAC  250

seq1  AACATACTCAACTATATGATAAAAAGAAGAAAACTATAAATACTTTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACTCAACTATATGATAAAAAGAAGAAAACTATAAATACTTTGAAG  300

seq1  TTTCTCTCCAAAAAGTTTTTCTAGTTGGAAAGAAAATGTGTGTGAGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCAAAAAGTTTTTCTAGTTGGAAAGAAAATGTGTGTGAGTGAG  350

seq1  GGATGCATAAAGCAGTGTGCACAAGAGGTCAGAGGACTTGAGAGTCAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCATAAAGCAGTGTGCACAAGAGGTCAGAGGACTTGAGAGTCAGTT  400

seq1  TTTTCCTTCTGTCACTTCCATCTTGGGAGTCTTTAAACTCCTATCAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTCTGTCACTTCCATCTTGGGAGTCTTTAAACTCCTATCAGGCT  450

seq1  TGGCAGCAAGCGTTTTTTGCCAGCTGAGCCATCCTGCCGACCCCCCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCAAGCGTTTTTTGCCAGCTGAGCCATCCTGCCGACCCCCCCTCC  500

seq1  CTCCCGAAGCCTGACTTTAGGTAAACAATTTGAACTTACAAAGAGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGAAGCCTGACTTTAGGTAAACAATTTGAACTTACAAAGAGCTTTT  550

seq1  GTGTGAGGCTTCCAGTTATGAAAGAGGATCAATGCCTGTGATTTTCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGGCTTCCAGTTATGAAAGAGGATCAATGCCTGTGATTTTCCCAG  600

seq1  AGTCCTTCGTTGGCGGACCTGGCCAGCCAGCTCACTGTCTGGGGAAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTCGTTGGCGGACCTGGCCAGCCAGCTCACTGTCTGGGGAAGGTC  650

seq1  ATCGCTCGGCTGCCTGGGGTAAGGGCCAGTGTATAGAATCTGGAAGTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTCGGCTGCCTGGGGTAAGGGCCAGTGTATAGAATCTGGAAGTTTA  700

seq1  CAGCTGGTTTGTGATCATCTCCCAGTCCTGTGTACCCCTTCC-TGGCCTC  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGCTGGTTTGTGATCATCTCCCAGTCCTGTGTACCCCTTCCTTGGCCTC  750

seq1  CTCCCCCTTTCCTACTGTTAGCCTTTTTTTGATGTCACTCCTGCCATTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTTTCCTACTGTTAGCCTTTTTTTGATGTCACTCCTGCCATTGT  800

seq1  GAGCTGACAGGCCCTCCCAGCCCT-GGAGGACATGCGAAACCATAAGCAT  848
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGCTGACAGGCCCTCCCAGCCCTGGGAGGACATGCGAAACCATAAGCAT  850

seq1  CAGGGAGCTGGAGCTGGGAGGTGGGGGGG  877
      |||||||||||||||||||||||||||||
seq2  CAGGGAGCTGGAGCTGGGAGGTGGGGGGG  879

seq1: chr6_29342044_29343164
seq2: B6Ng01-344F01.g_69_1188 (reverse)

seq1  AATGTGG-AGGACAGGGAAAGAAGAGTTGGAGT--GTTCTACGCGGC-TT  46
      ||||||| ||||||||||||| ||||||| |||   ||||||||||| ||
seq2  AATGTGGAAGGACAGGGAAAG-AGAGTTGAAGTTGTTTCTACGCGGCTTT  49

seq1  CTATTTACTAGAAAAGCATGGTGACTTAAAGATCCAGGG-AAATGGGTGC  95
      ||||||||||||||||||||||||||  ||||||||||| ||||||||||
seq2  CTATTTACTAGAAAAGCATGGTGACT--AAGATCCAGGGAAAATGGGTGC  97

seq1  ACAGCGGTGGCACCAACCTCTAATCAGAGGCAGAGACAGACAGATCTCTG  145
      |||||||||||||| |||||||||||   |||||||||||||||||||||
seq2  ACAGCGGTGGCACC-ACCTCTAATCAAGAGCAGAGACAGACAGATCTCTG  146

seq1  TACATTTGAAACCAGCTTGGTCTACATAGTGGGCTCTAGGCTAACCAATG  195
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  TACA-TTGAACCCAGCTTGGTCTACATAGTGGGCTCTAGGCTAACCAATG  195

seq1  AGCTACACAGCTGCTTAGCTATACAGTGAGACCCTGTCTCCAAAGAGTGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACACAGCTGCTTAGCTATACAGTGAGACCCTGTCTCCAAAGAGTGA  245

seq1  GGGTGAAGAAAAATGTACAAGGAGACTACTAGCATATGCAGCTTTTGCAC  295
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGGTGAAGAAAAATGTACAAGGAGACTACTAGCATATGCAGC-TTTGCAC  294

seq1  CACTGGGAGACAGGAAATAAAGAAGATAAATAAATCCACAATCAGTGGCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAGACAGGAAATAAAGAAGATAAATAAATCCACAATCAGTGGCA  344

seq1  TTTAATTGGCACCGCTACTTTACAGACTAACTTAGCAACACCTCTACTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGGCACCGCTACTTTACAGACTAACTTAGCAACACCTCTACTTT  394

seq1  ACAGACTAACTTAGCAACACCTCTACTTTACAGACTAACTTAGCAACAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTAACTTAGCAACACCTCTACTTTACAGACTAACTTAGCAACAGT  444

seq1  TAGTAAATTTAGAGGCACCTATTCCTTGTCCCAGAAATTCCCCTCTAGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATTTAGAGGCACCTATTCCTTGTCCCAGAAATTCCCCTCTAGTT  494

seq1  ACTTGCCCTTGGAATGTCTGCCACAAGGGCCGGGAAGGCATATATAGAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCCTTGGAATGTCTGCCACAAGGGCCGGGAAGGCATATATAGAAT  544

seq1  TGCCAGTTGCAGCATTTACTTTGTTATAGAAAACTGCAAGGAGCCCAGAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTTGCAGCATTTACTTTGTTATAGAAAACTGCAAGGAGCCCAGAT  594

seq1  GCTCACTAGAGGATGAACAGAACTATGTAAAACACGGTGGATACGTAAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTAGAGGATGAACAGAACTATGTAAAACACGGTGGATACGTAAAA  644

seq1  CTTTAAGGCTAGCTGATGAAAGTGGATTATGTAACACTTGACGGATGTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGGCTAGCTGATGAAAGTGGATTATGTAACACTTGACGGATGTTG  694

seq1  AAACCACACAAATCAAAATTATGTAATTTTTTGTGACTTATATACATATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACACAAATCAAAATTATGTAATTTTTTGTGACTTATATACATATA  744

seq1  AAGTACAGCTTTCAAACCATGGGATTGTTCCTAGTGGTCAGGGTTGGGTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAGCTTTCAAACCATGGGATTGTTCCTAGTGGTCAGGGTTGGGTT  794

seq1  TTCGATATTTTAGGCTTCTACTTCAAATAAAGGCTGACACAGATTTGCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATATTTTAGGCTTCTACTTCAAATAAAGGCTGACACAGATTTGCAA  844

seq1  AGTAGCAAGGAAATTTTATTCAAAAGGAAAGTAAACAGTATAAAGCAGGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAAGGAAATTTTATTCAAAAGGAAAGTAAACAGTATAAAGCAGGG  894

seq1  AGAGACACAGAGTAGGGATCAGGGGTACACAGGGGTGAGAAACCGTTCAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACAGAGTAGGGATCAGGGGTACACAGGGGTGAGAAACCGTTCAC  944

seq1  AGGCTCCAGTTATGACAGGAGGCATCTTGTTATGGTGTTCAAGAAAAGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCAGTTATGACAGGAGGCATCTTGTTATGGTGTTCAAGAAAAGAA  994

seq1  GTTTGGTTACTGAAGTGTATAAAGTTGTTCTCTCTTTTGATTAATAAATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTACTGAAGTGTATAAAGTTGTTCTCTCTTTTGATTAATAAATT  1044

seq1  AAGTCATATAATTATTTCTCACACATCTCCAATTTTAACCATTATACATA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATATAATTATTTCTCACACATCTCCAATTTTAACCATTATACATA  1094

seq1  GGCTTAAGATGGCAATCAAGGAATTC  1121
      ||||||||||||||||||||||||||
seq2  GGCTTAAGATGGCAATCAAGGAATTC  1120