BAC Information

Click to search

BAC

Clone NameB6Ng01-344I23
Chromosome6 (Build37)
Map Location 56,328,306 - 56,493,938
singlet/doubletdoublet
Overlap genenone
Upstream geneGhrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344I23.bB6Ng01-344I23.g
ACCGA127014GA127015
length5121,161
definitionB6Ng01-344I23.b B6Ng01-344I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,328,306 - 56,328,822)(56,492,779 - 56,493,938)
sequence
cagatgacaagtgccagaagccagggttgtcccttctccagtcattaaca
aggccagcatttctggataacttaggctgctatacaagtgcaagcatcag
ctctgagcccagtcaagtacagctgtagagttccccaccagaactcattt
cttagccagggtgacagcctgggggcggggggggggtgagagcaaaatgt
ctaaggcttttcagattgtaggtatcccatttcccttgcttctataaata
ctaagatgaaaagccaaagatgatagaaaacttacttctacaaagggaaa
ttttataacacacctattatgtgaaaggcactatgcttaggatttcgaaa
gcatcaacttgcacaatatatacaccttcctggaaaaccaccattgcttt
ttctatttctccctaaagtttagaaaactaagtgctttccctaaagagag
ccagtagtcagagcacatatctaactttaaattccagctttctaccagct
gctactaagatt
gaattcatttgtaaatggttctatagaatattaggaccttatcaagatgc
ttgaagaattatgaaactctggagccagtgagatggctcagagggtgaag
atacttgctgctaagcctgatgacctgagttcaaatccccagagcccatg
gtggaaggacggaactgagttctgcaagttgttctttgactttcccatgt
gtactgtggcatacacatgtgcctcttaaataaaaatcattaaaaaatta
attgatacataaacataagatataattttttaaacactataatatgtatg
tattagttcctggacatacttaaaaaaaaaaccataggcaattgtaacca
tcaatttgtgtttcaaggtgaactactgcagatgttgggataatgctgct
attatttcaatttctttgcttctgtgtttgggatagaattttactgtgta
gctcaggctggcctcagctttttgattctcttgcattttcttccttagtg
ccgagctgatagatgtgagccactgtaccctgctattatttcaatttttg
aaaagagttctgagatcacaggatgagcagcaatgccaatttcctactta
taaattcctcccttcttagaatcaccaactggaatttttctcaattatat
gtaatcaatacagaacaggaataatagagtggctgcttttttttctcata
agcaacagcactatccttacccataactgaaagtttttatcctcagtaaa
gaagtttccagttcactttactttataataaatatgaaaggtttcacttc
aaaaataaacttttgctaatacatttcattttagggttctgtgtaaaatt
tcctttgagtaacacgttccacagctgagaactctgtgcatcctggtaag
tgctgctgaggccacttgtcattgaagtccccttggatttaactgcacag
cgcccagtcctgctgctctagctgcacgttccacttctgtcggtgactca
tcacttctgtatgagagttgcgctcacgtctttcttggggaaatgaggca
agccacaggcgtagatggggggcactgaggaatcagtgaattttagaatt
tgagaatttaccgttggatccggaactggactgccatcacaggttaatga
aatcaatgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_56328306_56328822
seq2: B6Ng01-344I23.b_50_566

seq1  GAATTCCAGATGACAAGTGCCAGAAGCCAGGGTTGTCCCTTCTCCAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGACAAGTGCCAGAAGCCAGGGTTGTCCCTTCTCCAGTCA  50

seq1  TTAACAAGGCCAGCATTTCTGGATAACTTAGGCTGCTATACAAGTGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAGGCCAGCATTTCTGGATAACTTAGGCTGCTATACAAGTGCAAG  100

seq1  CATCAGCTCTGAGCCCAGTCAAGTACAGCTGTAGAGTTCCCCACCAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCTCTGAGCCCAGTCAAGTACAGCTGTAGAGTTCCCCACCAGAAC  150

seq1  TCATTTCTTAGCCAGGGTGACAGCCTGGGGGCGGGGGGGGGGTGAGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTTAGCCAGGGTGACAGCCTGGGGGCGGGGGGGGGGTGAGAGCA  200

seq1  AAATGTCTAAGGCTTTTCAGATTGTAGGTATCCCATTTCCCTTGCTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTAAGGCTTTTCAGATTGTAGGTATCCCATTTCCCTTGCTTCTA  250

seq1  TAAATACTAAGATGAAAAGCCAAAGATGATAGAAAACTTACTTCTACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACTAAGATGAAAAGCCAAAGATGATAGAAAACTTACTTCTACAAA  300

seq1  GGGAAATTTTATAACACACCTATTATGTGAAAGGCACTATGCTTAGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTTTATAACACACCTATTATGTGAAAGGCACTATGCTTAGGATT  350

seq1  TCGAAAGCATCAACTTGCACAATATATACACCTTCCTGGAAAACCACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAGCATCAACTTGCACAATATATACACCTTCCTGGAAAACCACCAT  400

seq1  TGCTTTTTCTATTTCTCCCTAAAGTTTAGAAAACTAAGTGCTTTCCCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTCTATTTCTCCCTAAAGTTTAGAAAACTAAGTGCTTTCCCTAA  450

seq1  AGAGAGCCAGTAGTCAGAGCACATATCTAACTTTAAATTCCAGCTTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCAGTAGTCAGAGCACATATCTAACTTTAAATTCCAGCTTTCTA  500

seq1  CCAGCTGCTACTAAGAT  517
      |||||||||||||||||
seq2  CCAGCTGCTACTAAGAT  517

seq1: chr6_56492779_56493938
seq2: B6Ng01-344I23.g_66_1226 (reverse)

seq1  TTGCATTGATTCCAT--AACTGTGATGGCAGTCTAGTTCCGAGAACTCAA  48
      ||||||||||| |||  | |||||||||||||| ||||||| ||  || |
seq2  TTGCATTGATTTCATTAACCTGTGATGGCAGTCCAGTTCCG-GA--TCCA  47

seq1  AAGGAAAATGTCTCAAA-TCTAAAAATCACTGA-TCCTCAGTG-CCCCCA  95
      | || |||| ||||||| ||||||| ||||||| ||||||||| ||||||
seq2  ACGGTAAAT-TCTCAAATTCTAAAATTCACTGATTCCTCAGTGCCCCCCA  96

seq1  TCTAACGCCTGTTGC-TGCCTCATTTCCCCAAGAAAGACGTGAGCGCCAC  144
      ||| |||||||| || ||||||||||||||||||||||||||||||| ||
seq2  TCT-ACGCCTGTGGCTTGCCTCATTTCCCCAAGAAAGACGTGAGCGCAAC  145

seq1  TCTCATTACAGAAGGTGGTTGAGTCACCGAACAGAAGTGG-ACGTGCAGC  193
      ||||| ||||||||   | |||||||||| |||||||||| |||||||||
seq2  TCTCA-TACAGAAG--TGATGAGTCACCG-ACAGAAGTGGAACGTGCAGC  191

seq1  TAAGAGCAGCAGGACTGGGCGCTGTGCAGTTAAATCCCAGGGGACTTCAA  243
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  T-AGAGCAGCAGGACTGGGCGCTGTGCAGTTAAATCCAAGGGGACTTCAA  240

seq1  TGACAAGTGGCCTCAGCAGCACTTACCAGGATGCACAG-GTTCTCAGCTG  292
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGACAAGTGGCCTCAGCAGCACTTACCAGGATGCACAGAGTTCTCAGCTG  290

seq1  TGGAACGTGTTACTCAAAGGAAATTTTACACAGAACCCTAAAATG-AATG  341
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGAACGTGTTACTCAAAGGAAATTTTACACAGAACCCTAAAATGAAATG  340

seq1  TATTAGC-AAAGTTTATTTTTGAAGTGAAACCTTTCATATTTATTATAAA  390
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCAAAAGTTTATTTTTGAAGTGAAACCTTTCATATTTATTATAAA  390

seq1  GTAAAGTGAACTGGAAACTTCTTTACTGAGGATAAAAACTTTCAGTTATG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTGAACTGGAAACTTCTTTACTGAGGATAAAAACTTTCAGTTATG  440

seq1  GGTAAGGATAGTGCTGTTGCTTATGAG-AAAAAAAGCAGCCACTCTATTA  489
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTAAGGATAGTGCTGTTGCTTATGAGAAAAAAAAGCAGCCACTCTATTA  490

seq1  TTCCTGTTCTGTATTGATTACATATAATTGAGAAAAATTCCAGTTGGTGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTCTGTATTGATTACATATAATTGAGAAAAATTCCAGTTGGTGA  540

seq1  TTCTAAGAAGGGAGGAATTTATAAGTAGGAAATTGGCATTGCTGCTCATC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGAAGGGAGGAATTTATAAGTAGGAAATTGGCATTGCTGCTCATC  590

seq1  CTGTGATCTCAGAACTCTTTTCAAAAATTGAAATAATAGCAGGGTACAGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCTCAGAACTCTTTTCAAAAATTGAAATAATAGCAGGGTACAGT  640

seq1  GGCTCACATCTATCAGCTCGGCACTAAGGAAGAAAATGCAAGAGAATCAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACATCTATCAGCTCGGCACTAAGGAAGAAAATGCAAGAGAATCAA  690

seq1  AAAGCTGAGGCCAGCCTGAGCTACACAGTAAAATTCTATCCCAAACACAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAGGCCAGCCTGAGCTACACAGTAAAATTCTATCCCAAACACAG  740

seq1  AAGCAAAGAAATTGAAATAATAGCAGCATTATCCCAACATCTGCAGTAGT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGAAATTGAAATAATAGCAGCATTATCCCAACATCTGCAGTAGT  790

seq1  TCACCTTGAAACACAAATTGATGGTTACAATTGCCTATGGTTTTTTTTTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGAAACACAAATTGATGGTTACAATTGCCTATGGTTTTTTTTTT  840

seq1  AAGTATGTCCAGGAACTAATACATACATATTATAGTGTTTAAAAAATTAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGTCCAGGAACTAATACATACATATTATAGTGTTTAAAAAATTAT  890

seq1  ATCTTATGTTTATGTATCAATTAATTTTTTAATGATTTTTATTTAAGAGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATGTTTATGTATCAATTAATTTTTTAATGATTTTTATTTAAGAGG  940

seq1  CACATGTGTATGCCACAGTACACATGGGAAAGTCAAAGAACAACTTGCAG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGTATGCCACAGTACACATGGGAAAGTCAAAGAACAACTTGCAG  990

seq1  AACTCAGTTCCGTCCTTCCACCATGGGCTCTGGGGATTTGAACTCAGGTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTTCCGTCCTTCCACCATGGGCTCTGGGGATTTGAACTCAGGTC  1040

seq1  ATCAGGCTTAGCAGCAAGTATCTTCACCCTCTGAGCCATCTCACTGGCTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCTTAGCAGCAAGTATCTTCACCCTCTGAGCCATCTCACTGGCTC  1090

seq1  CAGAGTTTCATAATTCTTCAAGCATCTTGATAAGGTCCTAATATTCTATA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTCATAATTCTTCAAGCATCTTGATAAGGTCCTAATATTCTATA  1140

seq1  GAACCATTTACAAATGAATTC  1160
      |||||||||||||||||||||
seq2  GAACCATTTACAAATGAATTC  1161