BAC Information

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BAC

Clone NameB6Ng01-344M15
Chromosome6 (Build37)
Map Location 22,301,583 - 22,467,078
singlet/doubletdoublet
Overlap geneD6Wsu176e, LOC100040948
Upstream geneKcnd2, LOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16
Downstream geneLOC100040959, LOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344M15.bB6Ng01-344M15.g
ACCGA127183GA127184
length9431,019
definitionB6Ng01-344M15.b B6Ng01-344M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,466,443 - 22,467,078)(22,301,583 - 22,302,577)
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatgaaaaattcaggagacagc
agatgctggcgagaatgtggagaaagaggaacactcctctattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctcc
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgttccaactggtaagaaggaaacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggataccatagtagatttctttttattattaa
ctttctttttaggaagtatagcatttcctgtctgctctcgggagaaaaag
atgaagaagtaaagaagtgggtttgctcctccacaccacaatgagctaca
tttcacattgtactgacctagccccttatttggatgttgccagggacatt
gtggggtgtgtgtgtgcatgtgtgtgtgtgtgtgtgagtccaccagaggt
tcttttatccttgagaagagtttttgctatcctaggtttttttgttattc
cagatgaatttgcaaatttctccttctaattcgttgaagaattgagttgg
aatttttgatggggatttgcattgaatctgtagattgcttttggcaagat
agccatttttacaatgttgatcctgccaatccatgagcatggggagatct
ttccatcttctgagatcttctttatttctttcagagatttttaagttttt
atcatacagatctttcacctccttagttagagtcacgcccaga
gaattcagaaacctgttatctgatctacagcagcctgaataaagctccct
tctcctacactggcaaacgcagctctaatacctaacacaggttacgaaaa
gtgcccggcggcgtaggccaactttgccccaaagacttaatgcaacaaca
ggtgctggaacctgacagacattctgagagcagtgttgcaacagacagct
cacttttgagtcggccgcttcctagcagaactctggaaactgtagaaacc
acagagacacctagagttctttctttcctctccaggaacctgagctagcc
cattacagaaatgtgccagttgatccgcatgcacttgacaatgttttcca
acaaaacatttaagggattaaaaagaaaatggccttgtgttcgtccttca
gcctaatagtacagataagcaagtttttccatctataaaggatgcttgta
cacaggctgggctagtctccactgacttctcagtagtacagaaagatgga
ttctaacctgcagacactccatcagggtcccactagctcttaaatttttt
aactcacagccagagttcaggtctcttttgagagattgctgttaacctta
ttaccatcacatctaaaaaccattcaacccaggagggtaagtggtgtgtt
taggtggagagtcagtaagtgggagtaaatgtgggctgcttactaaaaag
gaccaataaaaagctgtatgtcaaatggaactgccacacctactcaaaca
ctgcatgaagtaaatatttcagtgaacaagactattaagccactaatgga
taaataaaatggaaatgagtagccagattagattgcatgacacctcaaga
tatgtctgaggcactccttagaactcagccaccaatacaatcttcaataa
ctaacagatgtcacgcagggacgaccttttcataaactccttacaggttg
catggtctgaacatctgcacgaaatagtaataaaatttgtgtctgcgcga
atgtgatgtatgtgtgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_22466443_22467078
seq2: B6Ng01-344M15.b_43_678 (reverse)

seq1  CACACACACACACACACATGCACACACACACCCCACAATGTCCCTGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACATGCACACACACACCCCACAATGTCCCTGGCAA  50

seq1  CATCCAAATAAGGGGCTAGGTCAGTACAATGTGAAATGTAGCTCATTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAATAAGGGGCTAGGTCAGTACAATGTGAAATGTAGCTCATTGTG  100

seq1  GTGTGGAGGAGCAAACCCACTTCTTTACTTCTTCATCTTTTTCTCCCGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGGAGCAAACCCACTTCTTTACTTCTTCATCTTTTTCTCCCGAG  150

seq1  AGCAGACAGGAAATGCTATACTTCCTAAAAAGAAAGTTAATAATAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACAGGAAATGCTATACTTCCTAAAAAGAAAGTTAATAATAAAAAG  200

seq1  AAATCTACTATGGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACTATGGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTC  250

seq1  CAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGT  300

seq1  TTCCTTCTTACCAGTTGGAACATCTTCTGGATATATGCCCAGGAGAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTTACCAGTTGGAACATCTTCTGGATATATGCCCAGGAGAGGTA  350

seq1  TTGCGGGATCCTCCGGTAGTACTATGTCCAATTTTCGGAGGAACCGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGGGATCCTCCGGTAGTACTATGTCCAATTTTCGGAGGAACCGCCAG  400

seq1  ACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAATAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAATAGAG  450

seq1  GAGTGTTCCTCTTTCTCCACATTCTCGCCAGCATCTGCTGTCTCCTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTCCTCTTTCTCCACATTCTCGCCAGCATCTGCTGTCTCCTGAAT  500

seq1  TTTTCATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTT  550

seq1  TTGATTTGCATTTCCCTGATGATTAAGGATGCTGAACATTTTTTCAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGCATTTCCCTGATGATTAAGGATGCTGAACATTTTTTCAGGTG  600

seq1  CTTCTCAGCCATTCGGTATTCCTCAGGTGAGAATTC  636
      ||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGCCATTCGGTATTCCTCAGGTGAGAATTC  636

seq1: chr6_22301583_22302577
seq2: B6Ng01-344M15.g_66_1084

seq1  GAATTCAGAAACCTGTTATCTGATCTACAGCAGCCTGAATAAAGCTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAACCTGTTATCTGATCTACAGCAGCCTGAATAAAGCTCCCT  50

seq1  TCTCCTACACTGGCAAACGCAGCTCTAATACCTAACACAGGTTACGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTACACTGGCAAACGCAGCTCTAATACCTAACACAGGTTACGAAAA  100

seq1  GTGCCCGGCGGCGTAGGCCAACTTTGCCCCAAAGACTTAATGCAACAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCGGCGGCGTAGGCCAACTTTGCCCCAAAGACTTAATGCAACAACA  150

seq1  GGTGCTGGAACCTGACAGACATTCTGAGAGCAGTGTTGCAACAGACAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGAACCTGACAGACATTCTGAGAGCAGTGTTGCAACAGACAGCT  200

seq1  CACTTTTGAGTCGGCCGCTTCCTAGCAGAACTCTGGAAACTGTAGAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTGAGTCGGCCGCTTCCTAGCAGAACTCTGGAAACTGTAGAAACC  250

seq1  ACAGAGACACCTAGAGTTCTTTCTTTCCTCTCCAGGAACCTGAGCTAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACACCTAGAGTTCTTTCTTTCCTCTCCAGGAACCTGAGCTAGCC  300

seq1  CATTACAGAAATGTGCCAGTTGATCCGCATGCACTTGACAATGTTTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGAAATGTGCCAGTTGATCCGCATGCACTTGACAATGTTTTCCA  350

seq1  ACAAAACATTTAAGGGATTAAAAAGAAAATGGCCTTGTGTTCGTCCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACATTTAAGGGATTAAAAAGAAAATGGCCTTGTGTTCGTCCTTCA  400

seq1  GCCTAATAGTACAGATAAGCAAGTTTTTCCATCTATAAAGGATGCTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATAGTACAGATAAGCAAGTTTTTCCATCTATAAAGGATGCTTGTA  450

seq1  CACAGGCTGGGCTAGTCTCCACTGACTTCTCAGTAGTACAGAAAGATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTGGGCTAGTCTCCACTGACTTCTCAGTAGTACAGAAAGATGGA  500

seq1  TTCTAACCTGCAGACACTCCATCAGGGTCCCACTAGCTCTTAAATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACCTGCAGACACTCCATCAGGGTCCCACTAGCTCTTAAATTTTTT  550

seq1  AACTCACAGCCAGAGTTCAGGTCTCTTTTGAGAGATTGCTGTTAACCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAGCCAGAGTTCAGGTCTCTTTTGAGAGATTGCTGTTAACCTTA  600

seq1  TTACCATCACATCTAAAAACCATTCAACCCAGGAGGGTAAGTGGTGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATCACATCTAAAAACCATTCAACCCAGGAGGGTAAGTGGTGTGTT  650

seq1  TAGGTGGAGAGTCAGTAAGTGGGAGTAAATGTGGGCTGCTTACTAAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGAGAGTCAGTAAGTGGGAGTAAATGTGGGCTGCTTACTAAAAAG  700

seq1  GACCAATAAAAAGCTGTAGGTCAAATGGAACTGCCACACCTACGCAAACA  750
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  GACCAATAAAAAGCTGTATGTCAAATGGAACTGCCACACCTACTCAAACA  750

seq1  CTGCATGAAGTAAATATTTCAGTGAACAAGACTATTAAGCCACTAATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGAAGTAAATATTTCAGTGAACAAGACTATTAAGCCACTAATGGA  800

seq1  TAAAT-AAATGGAAATGAGTAGCCAGATTAGATTGCATGACACCTCAAGA  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAATGGAAATGAGTAGCCAGATTAGATTGCATGACACCTCAAGA  850

seq1  TATGTCTGAGGCACTCCTTAGAACTCAGCCACCAATACAATCTTCACT-A  898
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  TATGTCTGAGGCACTCCTTAGAACTCAGCCACCAATACAATCTTCAATAA  900

seq1  CAAACAGATGTCAGGCAGGG-CCACC-TTTCATAAACT-CTTACAGTTTG  945
      | ||||||||||| |||||| | ||| ||||||||||| ||||||| |||
seq2  CTAACAGATGTCACGCAGGGACGACCTTTTCATAAACTCCTTACAGGTTG  950

seq1  CATGGT-TGAACATCTG-AAGAAATATTAATAGAATTTGTGTGTGTGTGA  993
      |||||| |||||||||| | |||||| ||||| ||||||||| || | ||
seq2  CATGGTCTGAACATCTGCACGAAATAGTAATAAAATTTGTGTCTGCGCGA  1000

seq1  GT-----------------  995
       |                 
seq2  ATGTGATGTATGTGTGAGT  1019