BAC Information

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BAC

Clone NameB6Ng01-344N10
Chromosome6 (Build37)
Map Location 21,257,536 - 21,366,131
singlet/doubletdoublet
Overlap geneKcnd2
Upstream geneLOC100040838
Downstream geneLOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344N10.bB6Ng01-344N10.g
ACCGA127221GA127222
length1,1301,180
definitionB6Ng01-344N10.b B6Ng01-344N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,257,536 - 21,258,673)(21,364,965 - 21,366,131)
sequence
gaattcctcttaaatgatgaaaaattcttagttttggaacataattctgc
attctcccagcttttatccaaggggaattatgtacacagtgtttcctgtc
atgaacaggataactgtcccttaagggcctagatacagagggagatactg
atccttcacagcaccagttcaatttctctactgacctttattatgaagaa
tggctgataagtattgtagcttaagagtaaagagctatgtattctatcaa
gctactttgtaaatatatccataaattttgggggttttttgtttgtttat
tctggttaatataatttgcccgttttttttttctttttcttattcactta
aaatattattctctcctcccctcctggtaatgcctttccacaatccttcc
cacatctcctctccccttctcctctgagcaggtggggtcccctagatatc
ccacactcaccctggcccttcaagtctgtgtgaggctaagtgcttcctct
ccctctggtgtcagacaaggcagcccagctagtaaagcatatgccacata
caggcaacagcttctgatatagctcctgtttcagttgtttggaacccact
gtgtggttaagctacagatctgctacataagagcgggaggccaaggtcca
gcctatgtatattctttggttggtgattcagactcaaagagccccaaggg
cctaggttagttgacctggttagtcttcctggggagttcctatccccttc
ggggccagcaatcctacagcctatttttccataagaattcccaagctcca
tccaatgttaggccatgggtgtttgtatctgtctgagtcagctacttggt
tgaccctctcaggggacaacaggctcctgcctgcaagcacaacagaatat
cattgatagtattagggattggtgcttgcccatgtaatgggtctcaagtt
gggccagttattgtatggtatttcttcagtctatgctccatcccccgtaa
ctacatttcttgtagaccggataatctagattgaatttataactttgaac
aaaatttatggggagctgtgttgatctctttagttggccttactccttct
gccatatttgtagtcttaacatacaatctt

gaattcttttcaggcttttaggctttaaataatgcattaaggtaaggggg
tcatgaagaaggtcaactaagttcaaagtaaaggtggcttcagaacagaa
tactcaacatggagaattatggacaaggattataagaagggaataaataa
aaatgagaacactctcaagtcacctcacaacttctacgtcagaaagacag
aggttcgttcaacttctacacacgcatgcagagaaactggctcaagcagt
tgaggtgaggagagttgaggcaaatcttcatttcctttattttagctttc
acatgggaaaatgtgaaagccatcagaaagagaagagtaacttggtccca
attctactgtaaatacttgtttttgagtgaattttttttatacataaaga
aaatcagagactaatggtgatgattttataaaggacttgccacatttcta
caggactgtggctaggttcccagcacccaactggtgggtcccaaacttca
actctggttacagggaatgtaatgccttcttctggcttctgtgctcactg
catgaacactgcacacagaaatacattcaagcaaaacagccataaagaaa
ataaaactgaatttttttaaaaaaagatcaaataatttttctgtccataa
acttaaatactactcactgaccattgcatgtagttgagaaatgttatgtt
agagcaagagccgaagatgatctatgaacttcatatgtccatttattttt
cttgttgtaaacttgataaattgaaatttctcagctaattatgctataca
ttttcattttcttcacctgtgttctcctttataatctcttacctttcaga
acatataaggctcatattggaactctctcatctactgttttgtttattta
tagaaagtaagatggttgactcttttctgtcttggtgtaggatatagaat
ttgaaatactccttgcaagaatccttaaaagagaacattactctaggaag
ttaattccacagatacagttattcatttccttttattttttatttaacat
tagttttgaagtggtggcttttgggaggtattttggccatggtaaggccc
atgcctggcttacccaaattagaaaacactctgtaatggaccaagtattc
cacttagggaacttcctgcctagtaagtcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21257536_21258673
seq2: B6Ng01-344N10.b_50_1179

seq1  GAATTCCTCTTAAATGATGAAAAATTCTTAGTTTTGGAACATAATTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTAAATGATGAAAAATTCTTAGTTTTGGAACATAATTCTGC  50

seq1  ATTCTCCCAGCTTTTATCCAAGGGGAATTATGTACACAGTGTTTCCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCAGCTTTTATCCAAGGGGAATTATGTACACAGTGTTTCCTGTC  100

seq1  ATGAACAGGATAACTGTCCCTTAAGGGCCTAGATACAGAGGGAGATACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGGATAACTGTCCCTTAAGGGCCTAGATACAGAGGGAGATACTG  150

seq1  ATCCTTCACAGCACCAGTTCAATTTCTCTACTGACCTTTATTATGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCACAGCACCAGTTCAATTTCTCTACTGACCTTTATTATGAAGAA  200

seq1  TGGCTGATAAGTATTGTAGCTTAAGAGTAAAGAGCTATGTATTCTATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGATAAGTATTGTAGCTTAAGAGTAAAGAGCTATGTATTCTATCAA  250

seq1  GCTACTTTGTAAATATATCCATAAATTTTGGGGGTTTTTTGTTTGTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTGTAAATATATCCATAAATTTTGGGGGTTTTTTGTTTGTTTAT  300

seq1  TCTGGTTAATATAATTTGCCCGTTTTTTTTTTCTTTTTCTTATTCACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTAATATAATTTGCCCGTTTTTTTTTTCTTTTTCTTATTCACTTA  350

seq1  AAATATTATTCTCTCCTCCCCTCCTGGTAATGCCTTTCCACAATCCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTATTCTCTCCTCCCCTCCTGGTAATGCCTTTCCACAATCCTTCC  400

seq1  CACATCTCCTCTCCCCTTCTCCTCTGAGCAGGTGGGGTCCCCTAGATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCCTCTCCCCTTCTCCTCTGAGCAGGTGGGGTCCCCTAGATATC  450

seq1  CCACACTCACCCTGGCCCTTCAAGTCTGTGTGAGGCTAAGTGCTTCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTCACCCTGGCCCTTCAAGTCTGTGTGAGGCTAAGTGCTTCCTCT  500

seq1  CCCTCTGGTGTCAGACAAGGCAGCCCAGCTAGTAAAGCATATGCCACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGGTGTCAGACAAGGCAGCCCAGCTAGTAAAGCATATGCCACATA  550

seq1  CAGGCAACAGCTTCTGATATAGCTCCTGTTTCAGTTGTTTGGAACCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAACAGCTTCTGATATAGCTCCTGTTTCAGTTGTTTGGAACCCACT  600

seq1  GTGTGGTTAAGCTACAGATCTGCTACATAAGAGCGGGAGGCCAAGGTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTAAGCTACAGATCTGCTACATAAGAGCGGGAGGCCAAGGTCCA  650

seq1  GCCTATGTATATTCTTTGGTTGGTGATTCAGACTCAAAGAGCCCCAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGTATATTCTTTGGTTGGTGATTCAGACTCAAAGAGCCCCAAGGG  700

seq1  CCTAGGTTAGTTGACCTGGTTAGTCTTCCTGGGGAGTTCCTATCCCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTTAGTTGACCTGGTTAGTCTTCCTGGGGAGTTCCTATCCCCTTC  750

seq1  GGGGCCAGCAATCCTACAGCCTATTTTTCCATAAGAATTCCCAAGCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCAGCAATCCTACAGCCTATTTTTCCATAAGAATTCCCAAGCTCCA  800

seq1  TCCAATGTTAGGCCATGGGTGTTTGTATCTGTCTGAGTCAGCTACTTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGTTAGGCCATGGGTGTTTGTATCTGTCTGAGTCAGCTACTTGGT  850

seq1  TGACCCTCTCAGGGGACAACAGGCTCCTGCCTGCAAGCACAACAGAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTCTCAGGGGACAACAGGCTCCTGCCTGCAAGCACAACAGAATAT  900

seq1  CATTGATAGTATTAGGGATTGGTGCTTGCCCATGTAATGGGTCTCAAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATAGTATTAGGGATTGGTGCTTGCCCATGTAATGGGTCTCAAGTT  950

seq1  GGGCCAGTTATTGTATGGTAATTTCTTCAGTCTATGCTCCATCCCCCGTA  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGCCAGTTATTGTATGGT-ATTTCTTCAGTCTATGCTCCATCCCCCGTA  999

seq1  ACTACATTTCTTGTAGACCGGATAAATCTAGATTGAAAATTTTATAACTT  1050
      ||||||||||||||||||||||| |||||||||||||   |||||||| |
seq2  ACTACATTTCTTGTAGACCGGAT-AATCTAGATTGAA---TTTATAAC-T  1044

seq1  TTGAAACAAAAATTTAT-GGGAGCTTGTGTTTGATCTC-TTATGTGGCCT  1098
      |||||   ||||||||| |||||| |||| |||||||| |||  ||||||
seq2  TTGAA--CAAAATTTATGGGGAGC-TGTG-TTGATCTCTTTAGTTGGCCT  1090

seq1  TACTCTTTCTG-CATATATTGTAGTCTTAACATACCATCTT  1138
      ||||| ||||| ||||| ||||||||||||||||| |||||
seq2  TACTCCTTCTGCCATAT-TTGTAGTCTTAACATACAATCTT  1130


seq1: chr6_21364965_21366131
seq2: B6Ng01-344N10.g_69_1248 (reverse)

seq1  CGACTTACTTAAGCA-GAAGT--CCTAAGT-GAATACTGGGTCAATTACA  46
      |||||||| || ||| |||||  ||||||| ||||||| |||| ||||||
seq2  CGACTTAC-TAGGCAGGAAGTTCCCTAAGTGGAATACTTGGTCCATTACA  49

seq1  GAAGTG-TTTCTAATTTGGTAAAGCCAAGCATGGGCCTTA-CATTGCCAA  94
      | |||| ||||||||||||  |||||| |||||||||||| ||| |||||
seq2  G-AGTGTTTTCTAATTTGGGTAAGCCAGGCATGGGCCTTACCATGGCCAA  98

seq1  AAATACTCCC-AAAGCCA-CACTTCAAAACTAATGT--AAT-AAAAATAA  139
      ||   ||||| ||||||| |||||||||||||||||  ||| ||||||||
seq2  AATACCTCCCAAAAGCCACCACTTCAAAACTAATGTTAAATAAAAAATAA  148

seq1  AAGGAAATG-ATAACTGTATCTTGTGAATTAACTTCCTAGAGTAATGTTC  188
      ||||||||| ||||||||||||   |||||||||||||||||||||||||
seq2  AAGGAAATGAATAACTGTATCTGTGGAATTAACTTCCTAGAGTAATGTTC  198

seq1  TCTTTTAAGGATTC-TGCAAGGAGTATTTCAAATTCTATAT-CTACACCA  236
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  TCTTTTAAGGATTCTTGCAAGGAGTATTTCAAATTCTATATCCTACACCA  248

seq1  AGACAGAAAAGAGTCAACCATCTTACTTTCTATAAATAAACAAAACAGTA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAAAGAGTCAACCATCTTACTTTCTATAAATAAACAAAACAGTA  298

seq1  GATGAGAGAGTTCCAATATGAGCCTTATATGTTCTG-AAGGTAAGAGATT  335
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GATGAGAGAGTTCCAATATGAGCCTTATATGTTCTGAAAGGTAAGAGATT  348

seq1  ATAAAGGAGAACACAGGTGAAGAAAATGAAAATGTATAGCATAATTAGCT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGAGAACACAGGTGAAGAAAATGAAAATGTATAGCATAATTAGCT  398

seq1  GAGAAATTTCAATTTATCAAGTTTACAACAAGAAAAATAAATGGACATAT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATTTCAATTTATCAAGTTTACAACAAGAAAAATAAATGGACATAT  448

seq1  GAAGTTCATAGATCATCTTCGGCTCTTGCTCTAACATAACATTTCTCAAC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCATAGATCATCTTCGGCTCTTGCTCTAACATAACATTTCTCAAC  498

seq1  TACATGCAATGGTCAGTGAGTAGTATTTAAGTTTATGGACAGAAAAATTA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCAATGGTCAGTGAGTAGTATTTAAGTTTATGGACAGAAAAATTA  548

seq1  TTTGATCTTTTTTTAAAAAAATTCAGTTTTATTTTCTTTATGGCTGTTTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTTTTTTTAAAAAAATTCAGTTTTATTTTCTTTATGGCTGTTTT  598

seq1  GCTTGAATGTATTTCTGTGTGCAGTGTTCATGCAGTGAGCACAGAAGCCA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAATGTATTTCTGTGTGCAGTGTTCATGCAGTGAGCACAGAAGCCA  648

seq1  GAAGAAGGCATTACATTCCCTGTAACCAGAGTTGAAGTTTGGGACCCACC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGCATTACATTCCCTGTAACCAGAGTTGAAGTTTGGGACCCACC  698

seq1  AGTTGGGTGCTGGGAACCTAGCCACAGTCCTGTAGAAATGTGGCAAGTCC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGTGCTGGGAACCTAGCCACAGTCCTGTAGAAATGTGGCAAGTCC  748

seq1  TTTATAAAATCATCACCATTAGTCTCTGATTTTCTTTATGTATAAAAAAA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAATCATCACCATTAGTCTCTGATTTTCTTTATGTATAAAAAAA  798

seq1  ATTCACTCAAAAACAAGTATTTACAGTAGAATTGGGACCAAGTTACTCTT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCAAAAACAAGTATTTACAGTAGAATTGGGACCAAGTTACTCTT  848

seq1  CTCTTTCTGATGGCTTTCACATTTTCCCATGTGAAAGCTAAAATAAAGGA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTGATGGCTTTCACATTTTCCCATGTGAAAGCTAAAATAAAGGA  898

seq1  AATGAAGATTTGCCTCAACTCTCCTCACCTCAACTGCTTGAGCCAGTTTC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGATTTGCCTCAACTCTCCTCACCTCAACTGCTTGAGCCAGTTTC  948

seq1  TCTGCATGCGTGTGTAGAAGTTGAACGAACCTCTGTCTTTCTGACGTAGA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATGCGTGTGTAGAAGTTGAACGAACCTCTGTCTTTCTGACGTAGA  998

seq1  AGTTGTGAGGTGACTTGAGAGTGTTCTCATTTTTATTTATTCCCTTCTTA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGAGGTGACTTGAGAGTGTTCTCATTTTTATTTATTCCCTTCTTA  1048

seq1  TAATCCTTGTCCATAATTCTCCATGTTGAGTATTCTGTTCTGAAGCCACC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTTGTCCATAATTCTCCATGTTGAGTATTCTGTTCTGAAGCCACC  1098

seq1  TTTACTTTGAACTTAGTTGACCTTCTTCATGACCCCCTTACCTTAATGCA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTGAACTTAGTTGACCTTCTTCATGACCCCCTTACCTTAATGCA  1148

seq1  TTATTTAAAGCCTAAAAGCCTGAAAAGAATTC  1167
      ||||||||||||||||||||||||||||||||
seq2  TTATTTAAAGCCTAAAAGCCTGAAAAGAATTC  1180


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