BAC Information

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BAC

Clone NameB6Ng01-345B14
Chromosome6 (Build37)
Map Location 52,026,576 - 52,163,904
singlet/doubletdoublet
Overlap geneLOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6
Upstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2
Downstream geneHoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1, Jazf1, LOC666259, LOC666516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345B14.bB6Ng01-345B14.g
ACCGA127406GA127407
length1,1531,047
definitionB6Ng01-345B14.b B6Ng01-345B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,026,576 - 52,027,729)(52,162,849 - 52,163,904)
sequence
gaattcaatcgcttttcctgtggctcaccctgcctgcacaggtggctggg
ggaaccacagatccacatcagtgagagcagaagagaaacctagaatttgg
aaatgcgatcagacatccaggcagccgtccagttttgccagagacacagg
atgaacaagaagcctgttggaagcgcgtatgtgacttgattagctgatgt
acatctaacagaatgcctcgccttccagaccagtgtggagccaccccagc
agggcgtttctacaccttggcacaggggtatctgatacacttgaacacgc
cataatatttcttccatggtaggatttctagtctgtgaggtctacctcaa
aatattcttgtaaaggcataacatttctaggtaggaaacagctagcagcg
aggctgtcttcaattagaggtcaacagagaagggactgatccttcactcc
cggtgtgttagctactgttgggtcttctacattcctgttctatgcactct
catcggatggaaagatccgttttgcattctgctctaagaaagtccaccct
gcatggtgtttgatgataaaattgggtctgactcctgaaatgacttcaca
gcagaatctcatgatgctgtcatgttctagaagactagtcaagatggacg
ctggagagagacagattcttcatatttattatgccctaacctacaatgct
ctcctcacggccagcatctcattcttcattcaaatgccaacttcttgagg
catttcagggtcttgccttgtgtgtacgtatgcctctcactgtgtctgtg
tgtctttgtacttgagcacattagcagagatcaaaggacaacttgtggga
cttggttctgtccttccactgtgtggatctcgaggataagtctcaggtca
tcagacgtggcagcacgtaccttcacctgctgcgccatcttgccagatcc
caagaccgcgctttctatggcagaatgccctcagcccttctgtctgggtt
tacctttgctcatgaattatgcatagttattttaatgccattccctatct
ctgcatcttttcttcattaaaatgggagcttaatagaagtattggtcttc
cagaactcagcagtatccagagcacatggaacttactgtgtaccacagct
aaa
gaattcagggtccctgctgcagtacccccacttagccttcagaaagggtg
aggatgccccagggtccaacactgcagctgagggattcttggacgacatg
ggcctcaaaccctgcggcgcaaccaagtccaagtcctgttgctgaggaag
gactgtggctggggaaggggctagcggtgagagaccaggggcgagaggcg
gtggaagtagcttagagcatcctgagctgggcccgcgaaggtctccattc
ttatcccctgactaggctgggccagtttcttaggactttttttttttttt
ttttttttaaataaaatcggacctaaaagggtctgaaaaacctgcagccc
caaatcgggacagactcggtggtaagatggcgtctgtgtaagagccgcct
cctcttagtgatggggaaagggtcataaatccgttgttgtttatgaaaat
ttacaactttgcaatacaactttatgagttgttcggcccttccattggcc
gctgtcggtcatgtggataggaaccgtgaacatgaacttttttataattt
cccttgcgagaatagagccgcattcttttgctccgctccatcctgcgtgc
ttcggagctctgccttgccagcctgcctgggctgcgctttgtccggcgat
ggcgagcgaggggaagccgctgccaggcccaggccagccgttgtcgctgg
aggtggagcgcgtccagttcctggagcagccgccgctgctttgcaacttg
caacctggctaatttcctgcgtcctctggcaccaggaaggaggacaattc
gtctcttgggctgctcgaagcgacagctgtcagagaggcagaagctttct
gggagccgcggtcttgaagtgagacctgtggaaggagacagggcaaagtg
ggtgaggtactacagtggtagagaggcaccaggaacgactttggaaaggg
ctttttcacgctctttcagtactgtctttcattttcagcccaatatacat
cacagtcaaacacgtcactcatctcacccactaccgccaccactaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_52026576_52027729
seq2: B6Ng01-345B14.b_49_1201

seq1  GAATTCAATCGCTTTTCCTGTGGCTCACCCTGCCTGCACAGGTGGCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCGCTTTTCCTGTGGCTCACCCTGCCTGCACAGGTGGCTGGG  50

seq1  GGAACCACAGATCCACATCAGTGAGAGCAGAAGAGAAACCTAGAATTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCACAGATCCACATCAGTGAGAGCAGAAGAGAAACCTAGAATTTGG  100

seq1  AAATGCGATCAGACATCCAGGCAGCCGTCCAGTTTTGCCAGAGACACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCGATCAGACATCCAGGCAGCCGTCCAGTTTTGCCAGAGACACAGG  150

seq1  ATGAACAAGAAGCCTGTTGGAAGCGCGTATGTGACTTGATTAGCTGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAGAAGCCTGTTGGAAGCGCGTATGTGACTTGATTAGCTGATGT  200

seq1  ACATCTAACAGAATGCCTCGCCTTCCAGACCAGTGTGGAGCCACCCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAACAGAATGCCTCGCCTTCCAGACCAGTGTGGAGCCACCCCAGC  250

seq1  AGGGCGTTTCTACACCTTGGCACAGGGGTATCTGATACACTTGAACACGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGTTTCTACACCTTGGCACAGGGGTATCTGATACACTTGAACACGC  300

seq1  CATAATATTTCTTCCATGGTAGGATTTCTAGTCTGTGAGGTCTACCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATTTCTTCCATGGTAGGATTTCTAGTCTGTGAGGTCTACCTCAA  350

seq1  AATATTCTTGTAAAGGCATAACATTTCTAGGTAGGAAACAGCTAGCAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTTGTAAAGGCATAACATTTCTAGGTAGGAAACAGCTAGCAGCG  400

seq1  AGGCTGTCTTCAATTAGAGGTCAACAGAGAAGGGACTGATCCTTCACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTCTTCAATTAGAGGTCAACAGAGAAGGGACTGATCCTTCACTCC  450

seq1  CGGTGTGTTAGCTACTGTTGGGTCTTCTACATTCCTGTTCTATGCACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTGTTAGCTACTGTTGGGTCTTCTACATTCCTGTTCTATGCACTCT  500

seq1  CATCGGATGGAAAGATCCGTTTTGCATTCTGCTCTAAGAAAGTCCACCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGATGGAAAGATCCGTTTTGCATTCTGCTCTAAGAAAGTCCACCCT  550

seq1  GCATGGTGTTTGATGATAAAATTGGGTCTGACTCCTGAAATGACTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGTTTGATGATAAAATTGGGTCTGACTCCTGAAATGACTTCACA  600

seq1  GCAGAATCTCATGATGCTGTCATGTTCTAGAAGACTAGTCAAGATGGACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATCTCATGATGCTGTCATGTTCTAGAAGACTAGTCAAGATGGACG  650

seq1  CTGGAGAGAGACAGATTCTTCATATTTATTATGCCCTAACCTACAATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGAGACAGATTCTTCATATTTATTATGCCCTAACCTACAATGCT  700

seq1  CTCCTCACGGCCAGCATCTCATTCTTCATTCAAATGCCAACTTCTTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCACGGCCAGCATCTCATTCTTCATTCAAATGCCAACTTCTTGAGG  750

seq1  CATTTCAGGGTCTTGCCTTGTGTGTACGTATGCCTCTCACTGTGTCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGGGTCTTGCCTTGTGTGTACGTATGCCTCTCACTGTGTCTGTG  800

seq1  TGTCTTTGTACTTGAGCACATTAGCAGAGATCAAAGGACAACTTGTGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGTACTTGAGCACATTAGCAGAGATCAAAGGACAACTTGTGGGA  850

seq1  CTTGGTTCTGTCCTTCCACTGTGTGGATCTCGAGGATAAGTCTCAGGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTCTGTCCTTCCACTGTGTGGATCTCGAGGATAAGTCTCAGGTCA  900

seq1  TCAGACGTGGCAGCACGTACCTTCACCTGCTGCGCCATCTTGCCAGATCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACGTGGCAGCACGTACCTTCACCTGCTGCGCCATCTTGCCAGATCC  950

seq1  CAAGACCGCGCTTTCTATGGCAGAATG-CCTCAG-CCTTCTGTCT-GGTT  997
      ||||||||||||||||||||||||||| |||||| |||||||||| ||||
seq2  CAAGACCGCGCTTTCTATGGCAGAATGCCCTCAGCCCTTCTGTCTGGGTT  1000

seq1  TACC-TTGCTCATGAATTATTGCATAGTTATTTTAATTGCCCATTTCCCC  1046
      |||| |||||||||||||| |||||||||||||||||   |||||  |||
seq2  TACCTTTGCTCATGAATTA-TGCATAGTTATTTTAAT--GCCATT--CCC  1045

seq1  TATCTCTTGCATCTTTCTTTCATTAAAATGGAAGCTTAATAG-AGTATTG  1095
      |||||| |||||||||  ||||||||||||| |||||||||| |||||||
seq2  TATCTC-TGCATCTTTTCTTCATTAAAATGGGAGCTTAATAGAAGTATTG  1094

seq1  TCTTTCCAGGACTCAGCAAGTATTCAGAGCACAATGAAACTACTGTGTAC  1145
         |||||| ||||||| ||||| |||||||||  |||  ||||||||||
seq2  GTCTTCCAGAACTCAGC-AGTATCCAGAGCACATGGAACTTACTGTGTAC  1143

seq1  CACAG-TAAA  1154
      ||||| ||||
seq2  CACAGCTAAA  1153

seq1: chr6_52162849_52163904
seq2: B6Ng01-345B14.g_69_1115 (reverse)

seq1  TGTAGGTGGTGGCGGTAGTGGGTGAGAATGAGTGACGTGTTTGGACTGTG  50
      |||| ||||||||||||||||||||| ||||||||||||||| |||||||
seq2  TGTA-GTGGTGGCGGTAGTGGGTGAG-ATGAGTGACGTGTTT-GACTGTG  47

seq1  GTGTATATTGGGGCTGAAAATGAAAGGACAGTACTGAAAGAGCGTGAAAA  100
       |||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  ATGTATATT-GGGCTGAAAATGAAA-GACAGTACTGAAAGAGCGTGAAAA  95

seq1  AGGCCCCTTTTCAAAGTCGTTCCTGGTGCCCTCTCTTACCACTGTAGTAC  150
      ||  |||||| ||||||||||||||||| |||||| ||||||||||||||
seq2  AG--CCCTTTCCAAAGTCGTTCCTGGTG-CCTCTC-TACCACTGTAGTAC  141

seq1  CTCACCCACCTTTGCCCTGTCTCCTTCCCACAGGTCTCACCTTCAGACCG  200
      |||||||| ||||||||||||||||| ||||||||||||| |  ||||||
seq2  CTCACCCA-CTTTGCCCTGTCTCCTT-CCACAGGTCTCACTTCAAGACCG  189

seq1  CGGCTCCCAG-AAGCTTCTGCCTCTCTGACAGCTGTCGCTTCG-GCAGCC  248
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  CGGCTCCCAGAAAGCTTCTGCCTCTCTGACAGCTGTCGCTTCGAGCAGCC  239

seq1  CAAGAGACGAATTGTCCTCCTTCCTGGTGCCAGAGGACGCAGGAAATTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACGAATTGTCCTCCTTCCTGGTGCCAGAGGACGCAGGAAATTAG  289

seq1  CCAGGTTGCAAGTTGCAAAGCAGCGGCGGCTGCTCCAGGAACTGGACGCG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGCAAGTTGCAAAGCAGCGGCGGCTGCTCCAGGAACTGGACGCG  339

seq1  CTCCACCTCCAGCGACAACGGCTGGCCTGGGCCTGGCAGCGGCTTCCCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCTCCAGCGACAACGGCTGGCCTGGGCCTGGCAGCGGCTTCCCCT  389

seq1  CGCTCGCCATCGCCGGACAAAGCGCAGCCCAGGCAGGCTGGCAAGGCAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCGCCATCGCCGGACAAAGCGCAGCCCAGGCAGGCTGGCAAGGCAGA  439

seq1  GCTCCGAAGCACGCAGGATGGAGCGGAGCAAAAGAATGCGGCTCTATTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGAAGCACGCAGGATGGAGCGGAGCAAAAGAATGCGGCTCTATTCT  489

seq1  CGCAAGGGAAATTATAAAAAAGTTCATGTTCACGGTTCCTATCCACATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGGGAAATTATAAAAAAGTTCATGTTCACGGTTCCTATCCACATGA  539

seq1  CCGACAGCGGCCAATGGAAGGGCCGAACAACTCATAAAGTTGTATTGCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACAGCGGCCAATGGAAGGGCCGAACAACTCATAAAGTTGTATTGCAA  589

seq1  AGTTGTAAATTTTCATAAACAACAACGGATTTATGACCCTTTCCCCATCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAAATTTTCATAAACAACAACGGATTTATGACCCTTTCCCCATCA  639

seq1  CTAAGAGGAGGCGGCTCTTACACAGACGCCATCTTACCACCGAGTCTGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGGAGGCGGCTCTTACACAGACGCCATCTTACCACCGAGTCTGTC  689

seq1  CCGATTTGGGGCTGCAGGTTTTTCAGACCCTTTTAGGTCCGATTTTATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATTTGGGGCTGCAGGTTTTTCAGACCCTTTTAGGTCCGATTTTATTT  739

seq1  AAAAAAAAAAAAAAAAAAAAAAGTCCTAAGAAACTGGCCCAGCCTAGTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAGTCCTAAGAAACTGGCCCAGCCTAGTCA  789

seq1  GGGGATAAGAATGGAGACCTTCGCGGGCCCAGCTCAGGATGCTCTAAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATAAGAATGGAGACCTTCGCGGGCCCAGCTCAGGATGCTCTAAGCT  839

seq1  ACTTCCACCGCCTCTCGCCCCTGGTCTCTCACCGCTAGCCCCTTCCCCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACCGCCTCTCGCCCCTGGTCTCTCACCGCTAGCCCCTTCCCCAG  889

seq1  CCACAGTCCTTCCTCAGCAACAGGACTTGGACTTGGTTGCGCCGCAGGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTCCTTCCTCAGCAACAGGACTTGGACTTGGTTGCGCCGCAGGGT  939

seq1  TTGAGGCCCATGTCGTCCAAGAATCCCTCAGCTGCAGTGTTGGACCCTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCCATGTCGTCCAAGAATCCCTCAGCTGCAGTGTTGGACCCTGG  989

seq1  GGCATCCTCACCCTTTCTGAAGGCTAAGTGGGGGTACTGCAGCAGGGACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCTCACCCTTTCTGAAGGCTAAGTGGGGGTACTGCAGCAGGGACC  1039

seq1  CTGAATTC  1056
      ||||||||
seq2  CTGAATTC  1047