BAC Information

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BAC

Clone NameB6Ng01-347E01
Chromosome6 (Build37)
Map Location 130,032,416 - 130,033,568
singlet/doubletsinglet
Overlap geneLOC100038894, LOC667769
Upstream geneClec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038895, Klra4
Downstream geneLOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347E01.bB6Ng01-347E01.g
ACCGA128913GA128914
length1,1301,214
definitionB6Ng01-347E01.b B6Ng01-347E01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtagattactatgtgtctgtgaagacctgttagctatggggtg
cttaggaataaagggaaacaatgcaaaaatattagttacaagcactcatc
tgtgactatatttcaaatatgcccttttccttaaaacacaaacctataaa
accttgttttgtatgccaaacacatctgctttactatcgtcctagcattc
ttattgacaaaatataaatgggaaagcaagattggtaaaataattctttg
aaaatattgaaaatcagatttaaccactgattaaacacttgtgagtgtga
aatgtgatgtagagttttggtgtgataagagaccatttctttataatgaa
cttagaagaaaatattttcgtgatgaacttaggctaaacttaggctatat
attctgtatactttggccaatagaatttttaaaatcatgatttttttcag
tgaatgttcaaaatttactagttgcccactcttgtctttgctcttcagtg
acatgaaaataaggaaaatgaactttaagtctagaggatgtgtattttta
tctaaagcaagaatagaagatactgactgtaatattccctactactgtat
ttgtgggaagaaactggataaattccctgattaactttccaaccagagtt
aaaggtaaaaatggaatgtgttgatccttattcgtttcttgtaataattc
atgactccaacaaacaagtattttgattacagaacatagtctgctgtgaa
gagaaacaaagctgcaagaacattgggactgtcttctcgtacctatcttg
acagaacagaggtcattttctatcctgttggagagaggacacatctactc
aggtgaatgggcacgctttgccctaaagccttcagaattgtgttctttct
gattactaaactcccataaactgaataaagaagtccccccctaaatacag
catgatttccattatgtatgacaattgtttttgtttgttgtcattgctgc
ttgttgtctgaaacaaggttgctatgtgtaatcctgactgtactagaatc
agttgacgaccaggctggcctcaacgctgaacctgctgccctgcctctca
gatgctgggatcgagcatgtgcaccactgc
gaattctttgtttagctctgagacccattttttaatttgattatttgttt
tttctgaagtctaccttcttgagttttttatatatattggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggtc
tttttgtcttattgatggtgtcttttgctttgccgaagctttagagtttc
atgaggtcccatttgccaattcttggtcttacagcacaagccattgctgt
tctattcaggaattttccccctgtgcccatatcttcaaggcttttcccca
ctttctcctctataagtttcagtgtctctggttttacgtgatgttccttg
atccatttagatttgaccttagtacaaggagataggaatggatcgattca
cattcttctacatgataacaaccagttgtgccagcaccctttgttgaaaa
tgctgtctttcttccactggatggttttacctcccttgacaaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattt
gtctacttgtctgtctctagaccagtaccatgcagttttttatcacaatt
gctccgtagtacagctttaggtcaggcatggtgattccactagaggttct
tttatccttgagaagagtttttgctatcctaggttttttgttattccaga
tgaatctgccgatttctctttcttattcgttgaagaattgtgttggaatt
ttgatggggattgcattgaatctgtagattgcttttggcaagatagccat
ttttgcaatgttgatcctgccaatccatgagcatgggagatctttccatc
ttctgagatcttctttaatttctttcttcagagacttgaagttcttatca
tacagatctttcacttccttagttagagtcacaccaagattattttttta
ttatttgtgactactgagaagggttttgtttccctaatttctttctcacc
ctctttactctttgtgtagagaagggccattgacttgttgagtttataac
aatttggtatcttctggagttaggtgttataggtgtctctgggtaagact
ggtttattcctcatgattctgttagcttcatacgacgaacttgagactga
ttctctcctgattacgaggtcaaagaccactcttgtggttgtcacagctt
cactccttgcatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_130032416_130033568
seq2: B6Ng01-347E01.b_45_1174 (reverse)

seq1  GCAGTGGTGGCACATGCCTTCGATCCCAGCACTTGGGAGGCAGAGGCAGG  50
      |||||||| ||||||||  ||||||||||||  || ||||||| |||| |
seq2  GCAGTGGT-GCACATGC--TCGATCCCAGCATCTGAGAGGCAG-GGCA-G  45

seq1  CAGATTTTAGAGTTTGAGGCCAGCCTGGTCTTCAAACTGATTTCTAGTAC  100
      |||  || || | ||||||||||||||||| || |||||| |||||||||
seq2  CAG-GTTCAGCG-TTGAGGCCAGCCTGGTCGTC-AACTGA-TTCTAGTAC  91

seq1  AGTCAGGATTACACATAGCAACCCTGTTTCAGACAAACAAGCAAGCAAAT  150
      ||||||||||||||||||||||| |||||||||| ||||||| ||| |||
seq2  AGTCAGGATTACACATAGCAACCTTGTTTCAGAC-AACAAGC-AGC-AAT  138

seq1  GAACAAACAAACAAAAACAATTTGTCATAACATTAATGGAAATTCATGCT  200
      ||   ||||||||||||||| ||||||| ||| ||||||||| |||||||
seq2  GA--CAACAAACAAAAACAA-TTGTCAT-ACA-TAATGGAAA-TCATGCT  182

seq1  GTTATTTTAGGGGGGGGACTTCTTTATTCAGTTTTATGGGAGTTTAAGTA  250
      | |||||   ||||||||||||||||||||| ||||||||||||| ||||
seq2  G-TATTT--AGGGGGGGACTTCTTTATTCAG-TTTATGGGAGTTT-AGTA  227

seq1  ATCAGAAAGAACACAATTCTGAAGGCTTTAGGGCAAAGCGTGCCCATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAGAACACAATTCTGAAGGCTTTAGGGCAAAGCGTGCCCATTCA  277

seq1  CCTGAGTAGATGTGTCCTCTCTCCAACAGGATAGAAAATGACCTCTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTAGATGTGTCCTCTCTCCAACAGGATAGAAAATGACCTCTGTTC  327

seq1  TGTCAAGATAGGTACGAGAAGACAGTCCCAATGTTCTTGCAGCTTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGATAGGTACGAGAAGACAGTCCCAATGTTCTTGCAGCTTTGTTT  377

seq1  CTCTTCACAGCAGACTATGTTCTGTAATCAAAATACTTGTTTGTTGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACAGCAGACTATGTTCTGTAATCAAAATACTTGTTTGTTGGAGT  427

seq1  CATGAATTATTACAAGAAACGAATAAGGATCAACACATTCCATTTTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTATTACAAGAAACGAATAAGGATCAACACATTCCATTTTTACC  477

seq1  TTTAACTCTGGTTGGAAAGTTAATCAGGGAATTTATCCAGTTTCTTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCTGGTTGGAAAGTTAATCAGGGAATTTATCCAGTTTCTTCCCA  527

seq1  CAAATACAGTAGTAGGGAATATTACAGTCAGTATCTTCTATTCTTGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACAGTAGTAGGGAATATTACAGTCAGTATCTTCTATTCTTGCTTT  577

seq1  AGATAAAAATACACATCCTCTAGACTTAAAGTTCATTTTCCTTATTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAATACACATCCTCTAGACTTAAAGTTCATTTTCCTTATTTTCA  627

seq1  TGTCACTGAAGAGCAAAGACAAGAGTGGGCAACTAGTAAATTTTGAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGAAGAGCAAAGACAAGAGTGGGCAACTAGTAAATTTTGAACAT  677

seq1  TCACTGAAAAAAATCATGATTTTAAAAATTCTATTGGCCAAAGTATACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAAAAAATCATGATTTTAAAAATTCTATTGGCCAAAGTATACAG  727

seq1  AATATATAGCCTAAGTTTAGCCTAAGTTCATCATGAAAATATTTTCTTCT  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATATATAGCCTAAGTTTAGCCTAAGTTCATCACGAAAATATTTTCTTCT  777

seq1  AAGTTCATTATAAAGAAATGGTCTCTTATCACACCAAAACTCTACATCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCATTATAAAGAAATGGTCTCTTATCACACCAAAACTCTACATCAC  827

seq1  ATTTCACACTCACAAGTGTTTAATCAGTGGTTAAATCTGATTTTCAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACACTCACAAGTGTTTAATCAGTGGTTAAATCTGATTTTCAATAT  877

seq1  TTTCAAAGAATTATTTTACCAATCTTGCTTTCCCATTTATATTTTGTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGAATTATTTTACCAATCTTGCTTTCCCATTTATATTTTGTCAA  927

seq1  TAAGAATGCTAGGACGATAGTAAAGCAGATGTGTTTGGCATACAAAACAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGCTAGGACGATAGTAAAGCAGATGTGTTTGGCATACAAAACAA  977

seq1  GGTTTTATAGGTTTGTGTTTTAAGGAAAAGGGCATATTTGAAATATAGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATAGGTTTGTGTTTTAAGGAAAAGGGCATATTTGAAATATAGTC  1027

seq1  ACAGATGAGTGCTTGTAACTAATATTTTTGCATTGTTTCCCTTTATTCCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGAGTGCTTGTAACTAATATTTTTGCATTGTTTCCCTTTATTCCT  1077

seq1  AAGCACCCCATAGCTAACAGGTCTTCACAGACACATAGTAATCTACTGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCCATAGCTAACAGGTCTTCACAGACACATAGTAATCTACTGAA  1127

seq1  TTC  1153
      |||
seq2  TTC  1130