BAC Information

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BAC

Clone NameB6Ng01-347G21
Chromosome6 (Build37)
Map Location 57,125,486 - 57,126,560
singlet/doubletsinglet
Overlap genenone
Upstream genePde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397
Downstream geneV1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347G21.bB6Ng01-347G21.g
ACCGA129031GA129032
length1,0741,181
definitionB6Ng01-347G21.b B6Ng01-347G21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtgacttggtttagagtcttctgggaggcagatagttcaatct
ctgcttagagggggatctccgttgtccatggttacaacaggcctcctgta
ttgtggtttgtacaatacttctgtgttaatagttagagaaaacctcctgt
gtttcttgttaacccaaacttcctgggagacaggcaggctgtggagtgtg
ggagatgtactgacatacagatctggcccaagtggaggtgcagattagaa
agtgacaattagattttaaagagtgaatctgctgaatattccaaataccc
tgattctttaaagcctttcatccacactaaacaaagggatctcaagcctc
ccaaaatctgtctcagttgagcatcttttgacaaatacttcatctaactc
ttggtaccatgctcttactttgaatttcacattgagtaatataaatccca
cagcctcccatactctgccaagacttctttggcttggacaccctgtcagg
tgtcatctgcagtcctcgtgcttaaagcccagaggagcaactgttccaga
aatgccaacttaccaatctgaggctcattaaagcaatgctaggattcagt
tattcttcttgacccattcatatgttcaaatccagtaccatttaggtgac
tctttcactacaactttggttttcagcctaaggtgcatccttagctgtgt
agaacaaattttctgtgtggtgactctgagaaaacacttccaaaactggt
ctctttttaaatctccactaatttctcagttcctgtggacaagaatccag
tattatagcaaaccaaaggtttatctttagtcgatctggtgttttgttaa
ccacagctgactaattcttcagctccagctacccagaagtataaaatctt
aattccacaacaaattgccttgcagagttttttttttttttcataaactt
ccctctgaaactttacaatcaggatactgtcgtctattagtgatttaatg
ttttcagcttccaaggtgcctaggaaaagccccactgaaatctcacactc
aatagctttttctaatttaaggtc
gaattctggatgaaattcaagacagtctatcagaggcagagcagggagag
agattaggagcaaaacggacacatggtgcaccaattaagcatacaggcct
ttccacggaccttgagcccgaggaaaagataatgtcgggaaagaataccc
agggtgagtttggaaggaaggagaaggaaaaagagaagaagaaagatcaa
tcagcggaggtccctaggagaaagaaactatacccgccactagataggtt
taaggagctacctcttagtagctcagaatcagatgagggacttagctcct
ctgaggaaatggattggaggaggaagcagctcgttatgagggagaaaggt
accagccagataaaatgcaagctaatcagtccagaaaaaggccaaaagtg
gctggagaaagccagcttgctgctcggtctccggactgtcggcttcaggg
tcctagtgcacctctgccttatgtgcagaggtatcattcagactcattca
ttccaaaagaggaatagaggaaaatgcaacaggcatttccagtttttgaa
ggagccgagggagggcgagttcacgctccagtggagtatattcagattaa
ggagcttgccaagtctgtccgtaactatggagtcagcgccaatttcacta
tagcataagtcaaaaggcttgcggcttcggcaatgactcctggagattgg
acaatggtggtgaaagctgtggttccaaatatggggatgtatcttgagtg
gaaagcattatggcaggatttctgccagatgcaggcaagggctaatgcca
ccatggaaggggaccaaagaaagtggatttttgaattacttacaggtcag
gacagcatgctgctaactcagaaaaattatcatttggggagcgtacactc
agatctcagctgccactgttaaggcgtgaaaagcactctctaggaagggg
gaggcgagtggacatttgacagaattaccagggcacacaggagtcattct
cagattttgtggtcagatgatgaggcagcaggagatatttgagactccaa
agcagcttatgcttatggaacagtgggtttatgaacaggctatgcagaat
gcagatcagaaatcacaccttagaagataaggttacaggactggttaggt
gccgtggagcctgagaggtccgccttaccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_57125486_57126560
seq2: B6Ng01-347G21.b_49_1122

seq1  GAATTCTGTGACTTGGTTTAGAGTCTTCTGGGAGGCAGATAGTTCAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGACTTGGTTTAGAGTCTTCTGGGAGGCAGATAGTTCAATCT  50

seq1  CTGCTTAGAGGGGGATCTCCGTTGTCCATGGTTACAACAGGCCTCCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAGAGGGGGATCTCCGTTGTCCATGGTTACAACAGGCCTCCTGTA  100

seq1  TTGTGGTTTGTACAATACTTCTGTGTTAATAGTTAGAGAAAACCTCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTTGTACAATACTTCTGTGTTAATAGTTAGAGAAAACCTCCTGT  150

seq1  GTTTCTTGTTAACCCAAACTTCCTGGGAGACAGGCAGGCTGTGGAGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGTTAACCCAAACTTCCTGGGAGACAGGCAGGCTGTGGAGTGTG  200

seq1  GGAGATGTACTGACATACAGATCTGGCCCAAGTGGAGGTGCAGATTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTACTGACATACAGATCTGGCCCAAGTGGAGGTGCAGATTAGAA  250

seq1  AGTGACAATTAGATTTTAAAGAGTGAATCTGCTGAATATTCCAAATACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAATTAGATTTTAAAGAGTGAATCTGCTGAATATTCCAAATACCC  300

seq1  TGATTCTTTAAAGCCTTTCATCCACACTAAACAAAGGGATCTCAAGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTTAAAGCCTTTCATCCACACTAAACAAAGGGATCTCAAGCCTC  350

seq1  CCAAAATCTGTCTCAGTTGAGCATCTTTTGACAAATACTTCATCTAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATCTGTCTCAGTTGAGCATCTTTTGACAAATACTTCATCTAACTC  400

seq1  TTGGTACCATGCTCTTACTTTGAATTTCACATTGAGTAATATAAATCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACCATGCTCTTACTTTGAATTTCACATTGAGTAATATAAATCCCA  450

seq1  CAGCCTCCCATACTCTGCCAAGACTTCTTTGGCTTGGACACCCTGTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCCATACTCTGCCAAGACTTCTTTGGCTTGGACACCCTGTCAGG  500

seq1  TGTCATCTGCAGTCCTCGTGCTTAAAGCCCAGAGGAGCAACTGTTCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTGCAGTCCTCGTGCTTAAAGCCCAGAGGAGCAACTGTTCCAGA  550

seq1  AATGCCAACTTACCAATCTGAGGCTCATTAAAGCAATGCTAGGATTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAACTTACCAATCTGAGGCTCATTAAAGCAATGCTAGGATTCAGT  600

seq1  TATTCTTCTTGACCCATTCATATGTTCAAATCCAGTACCATTTAGGTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCTTGACCCATTCATATGTTCAAATCCAGTACCATTTAGGTGAC  650

seq1  TCTTTCACTACAACTTTGGTTTTCAGCCTAAGGTGCATCCTTAGCTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACTACAACTTTGGTTTTCAGCCTAAGGTGCATCCTTAGCTGTGT  700

seq1  AGAACAAATTTTCTGTGTGGTGACTCTGAGAAAACACTTCCAAAACTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAATTTTCTGTGTGGTGACTCTGAGAAAACACTTCCAAAACTGGT  750

seq1  CTCTTTTTAAATCTCCACTAATTTCTCAGTTCCTGTGGACAAGAATCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTAAATCTCCACTAATTTCTCAGTTCCTGTGGACAAGAATCCAG  800

seq1  TATTATAGCAAACCAAAGGTTTATCTTTAGTCGATCTGGTGTTTTGTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAGCAAACCAAAGGTTTATCTTTAGTCGATCTGGTGTTTTGTTAA  850

seq1  CCACAGCTGACTAATTCTTCAGCTCCAGCTACCCAGAAGTATAAAATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTGACTAATTCTTCAGCTCCAGCTACCCAGAAGTATAAAATCTT  900

seq1  AATTCCACAACAAATTGCCTTGCAGAGTTTTTTTTTTTTTTCATAAACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCACAACAAATTGCCTTGCAGAGTTTTTTTTTTTTTTCATAAACTT  950

seq1  CCCTCTGAAACTTTACAATCAAGGATACTGTCGTCTA-TAGTGATTTTAA  999
      |||||||||||||||||||| |||||||||||||||| |||||| |||||
seq2  CCCTCTGAAACTTTACAATC-AGGATACTGTCGTCTATTAGTGA-TTTAA  998

seq1  TGTTTTCAGCTTCCAA-GTGCCTAAGGAAAAG-CCCACTGAAATCTCAAC  1047
      |||||||||||||||| |||||| |||||||| |||||||||||||| ||
seq2  TGTTTTCAGCTTCCAAGGTGCCT-AGGAAAAGCCCCACTGAAATCTC-AC  1046

seq1  ACTCAATAGC-TTTTCTAATTTAAAGGTC  1075
      |||||||||| ||||||||||| ||||||
seq2  ACTCAATAGCTTTTTCTAATTT-AAGGTC  1074