BAC Information

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BAC

Clone NameB6Ng01-347P20
Chromosome6 (Build37)
Map Location 20,898,674 - 21,002,358
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343, Tspan12, LOC100041358, Ing3, A430107O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347P20.bB6Ng01-347P20.g
ACCGA129426GA129427
length1,1721,187
definitionB6Ng01-347P20.b B6Ng01-347P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,001,167 - 21,002,358)(20,898,674 - 20,899,871)
sequence
gaattctgaaataaaataaatatcaatgtagcaaattaactacttcctaa
acacaatctgaaaacatcagaaaacactacagctcaagaagcagaatttt
cccgttgtctgaaacttgggataaaggtacaagaaagaggactgtaacaa
ttgtttaaatctttggagaaatatttaacctaaattgactatatcccaga
tcatcttttttgcaactttaggcccctgaactccttatttgtgaagtttt
tatgtgatcacacccacaattgttaatcttttgaggatgcaaataatttg
aactttctccagagttgtgaaacttggcagagtttctccaaaactggggt
gagttattgcaggagttgggagtgatggtcatcttttggtgtataattgt
cacaaacaggcctgctctccttgttactgcgatggtgtgggatcataaat
ttaggggcactacttccagtcatgaaagtaaatgaacatggctttgttga
ctgaaatcaaacacaggagactctagattctccattgcacatgattaaaa
cctcgcttgtcttttagtccagccatgctgaaataaagtactatgctttt
ctccctcatactctatcttgagcgtcgtctgtcacattttgcttgggttt
gtataatatttgccttagcattgcacacacaggagatggaagcagaaatg
atgtgtcctttaatctatttatgtaacgtaaaaatcaaccacaaactaga
tgtagaaacgtggagttcatgaacttcaagtcagatttaaattttgattt
gtttttccacagactatttactgagagtgagttagatttatgaatatgaa
gcattttacatcatttccataggcttaactagttctttgagagtttcata
gaatatactttgatcataattaactccttgtcaaatcttccatgatccat
tcttcttcactatccaaccaattttgtagtatttattattttgttttcct
ttcacttttaatcctcaaaacacatatttgtgctgtcaaagtttttggaa
tatctagtcttcttctaaatatggtgactacaggaacacacgagcagaga
aaactgtctcctcttgatagaattacctaattgtcaggaatctgactagg
gatgtaatggtgccacttcatt

gaattcatttagcaatacactaatggaacattgttccaaattaactgctc
acaggcagccaccataaactctctgtttataaatgttgtttaggatactt
tatatatatgcagacaaaaggtaaaaataacttagaggttttctacagaa
ttaatggtttctcttttatcatcatcttcttcttcattaattagagaata
ttattaacttaacttttcattctctcttagttatttcctaacatctcgtg
gtataggacatggcttactatactacaaccaatcacattccatgtcttgg
gtgcctccctccattatgataaactattgattttctttgcctttgatgac
catgacaactctgagaagcacttgctagtattttatagaattttcatgtg
gttgtatctctctggtattttcctcatgatcagaataagactatgtctgt
aaagaggaaaatcacagaggttacaatcaattttgtattgtgttatgcta
cggtcacataccagtagccctcaatgctaaagtcttgctattagtttctt
ccactaaaccttccttcttttctcattccaatcctttgagcaagtcacct
taaaaacaaaacaaaacaaaacaaacaaaacaaacaaacaaaaaacaaca
aaaaaaaaccacttaaagaatcccattaagcacaacccaatattagaaaa
ttgaggaatagacaatgtatttaattccaaaatattttttctaaaatagt
ataaaagaaagcacagtcacagagattgaaccaccacgctgagagcatac
atgggactagccctaggccctctgcacatatgtaacagttgtgtagctgt
tcttcatgtgggactcataacagtggaagaaagggctgtctctgactatg
ttgcctgcctttaggacccttccctaactgggctgcccagtctcctcaat
gaaagaagtgctcctggtattactgtgatctgaacttaacttcactacgc
agcctacactgcagctaagtagctctcatcctgacctgtgagaagtgagt
atatctattctctgactcattctgtcaaatctctcctcagattgtcactt
ttcaacattgaatgcttcttctgcaacggttacttttcattgtaggatta
ggttatcctaagacagtgcctgatccacacagaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21001167_21002358
seq2: B6Ng01-347P20.b_52_1223 (reverse)

seq1  AATGAAGTTGGGCACACAATCCCATCCCTAGTCAGGGAATTCCTGACAAA  50
      |||||||| |    ||| ||  |||||||||||||   ||||||||| ||
seq2  AATGAAGTGG----CACCATTACATCCCTAGTCAG---ATTCCTGAC-AA  42

seq1  TTTAGTTATTCTATTAAAGAGGAGACAGTTTTCTCTGCTCGTGTGTCCCT  100
      ||  || |||||| | |||||||||||||||||||||||||||||| |||
seq2  TTAGGTAATTCTA-TCAAGAGGAGACAGTTTTCTCTGCTCGTGTGTTCCT  91

seq1  GGTAAGTCAACCATATTTAAGAAGAAGACTAGATA-TCCAAAAACTTTTG  149
      |   |||| ||||||||| |||||||||||||||| ||||||||||||  
seq2  G--TAGTC-ACCATATTT-AGAAGAAGACTAGATATTCCAAAAACTTT--  135

seq1  AACAGCACAAATATGTGTTTTGAAGGATTAAAAAGTGAAAAGGAAAACAA  199
       ||||||||||||||||||||| |||||| ||||||| ||||||||||||
seq2  GACAGCACAAATATGTGTTTTG-AGGATT-AAAAGTG-AAAGGAAAACAA  182

seq1  AAATAAATAAATAACTACAAAATTGGTTGGATAGTGAAGAAGAATGGATC  249
      ||   ||||||| |||||||||||||||||||||||||||||||||||||
seq2  AA--TAATAAAT-ACTACAAAATTGGTTGGATAGTGAAGAAGAATGGATC  229

seq1  ATGGAAGATTTGACAAGGAGTTAATTATGATCAAAGTATATTCTATGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGATTTGACAAGGAGTTAATTATGATCAAAGTATATTCTATGAAA  279

seq1  CTCTCAAAGAACTAGTTAAGCCTATGGAAATGATGTAAAATGCTTCATAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAAGAACTAGTTAAGCCTATGGAAATGATGTAAAATGCTTCATAT  329

seq1  TCATAAATCTAACTCACTCTCAGTAAATAGTCTGTGGAAAAACAAATCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATCTAACTCACTCTCAGTAAATAGTCTGTGGAAAAACAAATCAA  379

seq1  AATTTAAATCTGACTTGAAGTTCATGAACTCCACGTTTCTACATCTAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATCTGACTTGAAGTTCATGAACTCCACGTTTCTACATCTAGTT  429

seq1  TGTGGTTGATTTTTACGTTACATAAATAGATTAAAGGACACATCATTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGATTTTTACGTTACATAAATAGATTAAAGGACACATCATTTCT  479

seq1  GCTTCCATCTCCTGTGTGTGCAATGCTAAGGCAAATATTATACAAACCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCATCTCCTGTGTGTGCAATGCTAAGGCAAATATTATACAAACCCA  529

seq1  AGCAAAATGTGACAGACGACGCTCAAGATAGAGTATGAGGGAGAAAAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATGTGACAGACGACGCTCAAGATAGAGTATGAGGGAGAAAAGCA  579

seq1  TAGTACTTTATTTCAGCATGGCTGGACTAAAAGACAAGCGAGGTTTTAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTTTATTTCAGCATGGCTGGACTAAAAGACAAGCGAGGTTTTAAT  629

seq1  CATGTGCAATGGAGAATCTAGAGTCTCCTGTGTTTGATTTCAGTCAACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCAATGGAGAATCTAGAGTCTCCTGTGTTTGATTTCAGTCAACAA  679

seq1  AGCCATGTTCATTTACTTTCATGACTGGAAGTAGTGCCCCTAAATTTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGTTCATTTACTTTCATGACTGGAAGTAGTGCCCCTAAATTTATG  729

seq1  ATCCCACACCATCGCAGTAACAAGGAGAGCAGGCCTGTTTGTGACAATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACACCATCGCAGTAACAAGGAGAGCAGGCCTGTTTGTGACAATTA  779

seq1  TACACCAAAAGATGACCATCACTCCCAACTCCTGCAATAACTCACCCCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAAAAGATGACCATCACTCCCAACTCCTGCAATAACTCACCCCAG  829

seq1  TTTTGGAGAAACTCTGCCAAGTTTCACAACTCTGGAGAAAGTTCAAATTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGAAACTCTGCCAAGTTTCACAACTCTGGAGAAAGTTCAAATTA  879

seq1  TTTGCATCCTCAAAAGATTAACAATTGTGGGTGTGATCACATAAAAACTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCCTCAAAAGATTAACAATTGTGGGTGTGATCACATAAAAACTT  929

seq1  CACAAATAAGGAGTTCAGGGGCCTAAAGTTGCAAAAAAGATGATCTGGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATAAGGAGTTCAGGGGCCTAAAGTTGCAAAAAAGATGATCTGGGA  979

seq1  TATAGTCAATTTAGGTTAAATATTTCTCCAAAGATTTAAACAATTGTTAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCAATTTAGGTTAAATATTTCTCCAAAGATTTAAACAATTGTTAC  1029

seq1  AGTCCTCTTTCTTGTACCTTTATCCCAAGTTTCAGACAACGGGAAAATTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTTTCTTGTACCTTTATCCCAAGTTTCAGACAACGGGAAAATTC  1079

seq1  TGCTTCTTGAGCTGTAGTGTTTTCTGATGTTTTCAGATTGTGTTTAGGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTGAGCTGTAGTGTTTTCTGATGTTTTCAGATTGTGTTTAGGAA  1129

seq1  GTAGTTAATTTGCTACATTGATATTTATTTTATTTCAGAATTC  1192
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTAATTTGCTACATTGATATTTATTTTATTTCAGAATTC  1172


seq1: chr6_20898674_20899871
seq2: B6Ng01-347P20.g_69_1255

seq1  GAATTCATTTAGCAATACACTAATGGAACATTGTTCCAAATTAACTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAGCAATACACTAATGGAACATTGTTCCAAATTAACTGCTC  50

seq1  ACAGGCAGCCACCATAAACTCTCTGTTTATAAATGTTGTTTAGGATACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGCCACCATAAACTCTCTGTTTATAAATGTTGTTTAGGATACTT  100

seq1  TATATATATGCAGACAAAAGGTAAAAATAACTTAGAGGTTTTCTACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATGCAGACAAAAGGTAAAAATAACTTAGAGGTTTTCTACAGAA  150

seq1  TTAATGGTTTCTCTTTTATCATCATCTTCTTCTTCATTAATTAGAGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGTTTCTCTTTTATCATCATCTTCTTCTTCATTAATTAGAGAATA  200

seq1  TTATTAACTTAACTTTTCATTCTCTCTTAGTTATTTCCTAACATCTCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACTTAACTTTTCATTCTCTCTTAGTTATTTCCTAACATCTCGTG  250

seq1  GTATAGGACATGGCTTACTATACTACAACCAATCACATTCCATGTCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGACATGGCTTACTATACTACAACCAATCACATTCCATGTCTTGG  300

seq1  GTGCCTCCCTCCATTATGATAAACTATTGATTTTCTTTGCCTTTGATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCCCTCCATTATGATAAACTATTGATTTTCTTTGCCTTTGATGAC  350

seq1  CATGACAACTCTGAGAAGCACTTGCTAGTATTTTATAGAATTTTCATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAACTCTGAGAAGCACTTGCTAGTATTTTATAGAATTTTCATGTG  400

seq1  GTTGTATCTCTCTGGTATTTTCCTCATGATCAGAATAAGACTATGTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATCTCTCTGGTATTTTCCTCATGATCAGAATAAGACTATGTCTGT  450

seq1  AAAGAGGAAAATCACAGAGGTTACAATCAATTTTGTATTGTGTTATGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAAAATCACAGAGGTTACAATCAATTTTGTATTGTGTTATGCTA  500

seq1  CGGTCACATACCAGTAGCCCTCAATGCTAAAGTCTTGCTATTAGTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCACATACCAGTAGCCCTCAATGCTAAAGTCTTGCTATTAGTTTCTT  550

seq1  CCACTAAACCTTCCTTCTTTTCTCATTCCAATCCTTTGAGCAAGTCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAACCTTCCTTCTTTTCTCATTCCAATCCTTTGAGCAAGTCACCT  600

seq1  TAAAAACAAAACAAAACAAAACAAACAAAACAAACAAACAAAAAACAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAAACAAAACAAAACAAACAAAACAAACAAACAAAAAACAACA  650

seq1  AAAAAAAACCACTTAAAGAATCCCATTAAGCACAACCCAATATTAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCACTTAAAGAATCCCATTAAGCACAACCCAATATTAGAAAA  700

seq1  TTGAGGAATAGACAATGTATTTAATTCCAAAATATTTTTTCTAAAATAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAATAGACAATGTATTTAATTCCAAAATATTTTTTCTAAAATAGT  750

seq1  ATAAAAGAAAGCACAGTCACAGAGATTGAACCACCACGCTGAGAGCATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAAGCACAGTCACAGAGATTGAACCACCACGCTGAGAGCATAC  800

seq1  ATGGGACTAGCCCTAGGCCCTCTGCACATATGTAACAGTTGTGTAGCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACTAGCCCTAGGCCCTCTGCACATATGTAACAGTTGTGTAGCTGT  850

seq1  TCTTCATGTGGGACTCATAACAGTGGAAGAAAGGGCTGTCTCTGACTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGTGGGACTCATAACAGTGGAAGAAAGGGCTGTCTCTGACTATG  900

seq1  TTGCCTGCCTTTAGGACCCTTCCCTAACTGGGCTGCCCAGTCTCCTCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGCCTTTAGGACCCTTCCCTAACTGGGCTGCCCAGTCTCCTCAAT  950

seq1  GAAAGAAGGTGCTCCTGGTATTACTGTGATCTGAACTTAACTTCACTACG  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAA-GTGCTCCTGGTATTACTGTGATCTGAACTTAACTTCACTACG  999

seq1  CAGCCCTACACTGCAGCTAAGTAGCCTCTCCATCCTGACCTTGTGAGAGT  1050
      ||| |||||||||||||||||||| |||| |||||||||| |||||||  
seq2  CAG-CCTACACTGCAGCTAAGTAG-CTCT-CATCCTGACC-TGTGAGAAG  1045

seq1  TGAGTATATCCTATCTCTGACTCATTCTGTCAAATCTCT-CTCAGATTTG  1099
      ||||||||||   |||||||||||||||||||||||||| |||||| |||
seq2  TGAGTATATCTATTCTCTGACTCATTCTGTCAAATCTCTCCTCAGA-TTG  1094

seq1  TCACTTTCAAACATTG-ATGCTTCCTTCTGCAAACGTTAC-TTTCATTGT  1147
      |||||||  ||||||| |||||| |||||||||  ||||| |||||||| 
seq2  TCACTTTTCAACATTGAATGCTT-CTTCTGCAACGGTTACTTTTCATTG-  1142

seq1  TTGGGATTAAAGGTGTATACTAAGGACA-TGTCTGTATTCTACACAGAGG  1196
       | |||||  |||| ||| |||| |||| || |||   || |||||||||
seq2  -TAGGATT--AGGT-TATCCTAA-GACAGTGCCTG--ATCCACACAGAGG  1185

seq1  GA  1198
      ||
seq2  GA  1187


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