BAC Information

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BAC

Clone NameB6Ng01-348C01
Chromosome6 (Build37)
Map Location 3,156,181 - 3,321,787
singlet/doubletdoublet
Overlap geneLOC100040185, EG667335
Upstream geneLOC100039885, LOC100039896
Downstream geneSamd9l, AI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348C01.bB6Ng01-348C01.g
ACCGA129514GA129515
length1,0851,129
definitionB6Ng01-348C01.b B6Ng01-348C01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,320,693 - 3,321,787)(3,156,181 - 3,157,274)
sequence
gaattcaccatatttttaggtctattcttagtgaacctgctccatagtcc
cttcttgccacccgtgaacatagactttcccccacctagattttagatac
tatctcttgccttcttttctccattcctacatttttattctcagtacttc
tcagcctgttctgcgtgcttgctattctccacctaagtgtagtttcaccc
agcaccctccaaaaggagttatccttcacaattccagtctagcatcacct
ctaccaggaactcttctctggccacatacagtccctgcctgattgatggc
ctcctagtggcagcatgttacctttctaacctctttctagtacaaggaat
ggcatcccagaagctcattcctaaatatctagtagccagaataactttaa
acaacattccagaccttgaaatttgaaagctatccatcaacattaaaatg
aagcacaggctaaatgatatttatatattatatatgcatttatatttcat
gtctcaatcttcttaaatataacaaaagccattccagactccgtgcttct
tgtcatcaataaggctccactctgtcagggttcttattgccactgaatct
ggaggtgctcacatagtccataaaaacattcttatatccagaagccacac
atgctactgtacctattcctaacaactgcttcctcctctacatcctaccc
ctccatctaacagatttttccgagtggcagcattttctgaagttccctgt
agatatagttttatccgtaagttcctcacaaaacagctatgcccaagctg
tagcatccataaattaatacatcccaaggtgtggtctggatgggggaagt
tataaagaaaagatgaaaacctttagattttcctgagagccaaagctaac
ttcatgtcactcaggcacaaagacatctctgaaggttcttagtcttgtta
aaaatgagttgaagacagtctctgagagaccttatggacattcatcacag
atttattggggagaggagaagagagaacagtcagggggaggtagagagct
gaagctcccagaagaggggagtagaggaagaaaat

gaattctattaatttctttttacttaccggtacccctgttccccagctga
agagttctgaatccacgcaattgaatctttctcaacagactgctttgcgg
gaacacttcactaaccgctcaatccccatgatgcagttctgaatcctccc
tgtaacaggaggtcttcgctcgtgcctgaagatgttacgtcccgggtttc
agcaccactctgtggtatgcctggctcgccagcaagaaagacgccacagc
aggatccttctgcaacacgtttattgggagagcattcactgtgtaggtaa
aagaccccgagccccagaactggtgctgtttatataggcctaggattgac
gtgtccacacctgattggttgtgccctcagcacctcattcacgtgccttg
ggtcaggcagcgactcagcaaaaaactctatggcacatgcacacattggc
tgtttacccatattcatgggcgtcggcttattgaaaccagcaccattttg
taatggcgtttgtggcttcccacatctcttgtaatggcgtttgcagcttc
ccacacatcatcatgtgataaactgaagtacaacatcaggagaaaataag
ttctaaccagcaacaacagactactggtatccctcaacacatgtggcaaa
atatctaagtagcagcctaggcttggaactggacaaggctgtctattgta
gtaggtctgtaccaaaacttgacaaatacattcagagtcaatgaactatg
agagacattaaaagttttaacagtccttccatatcccaaggagttctaca
tgactaatataacaaagaaagtggctctcataagccagcagagcctgtca
gttttctcctccccaaagctgctctgtgccctcactatagtgacagatga
tgacactaaacggcaagaatgtaccaggccttgtacttgaaattgttgga
aaagcatgtactcaattccatgttaactggtccttcattcagttaagaaa
gatgaggccaaatagttcctggagagatgaaatctatcctgtaaattgcc
agaaatagtgcctacctggaagggtcaatttatttttaatcacagtttcc
tgtcgaaatagagatggaacagccacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_3320693_3321787
seq2: B6Ng01-348C01.b_46_1130 (reverse)

seq1  ATTTTCCTTCCTTCTACTCCCCCTCTTCTGGGAGCTTCCAAGCTCTCTAC  50
      ||||| ||||| |||||| |||||||||||||||||||  ||||||||||
seq2  ATTTT-CTTCC-TCTACT-CCCCTCTTCTGGGAGCTTC--AGCTCTCTAC  45

seq1  CTCCCCTGGCCTGTTCTCTCTTTCTCCTCTTCCCAATAAATCTGTGATGA  100
      ||||||  | |||||||||| ||||||||| |||||||||||||||||||
seq2  CTCCCCCTGACTGTTCTCTC-TTCTCCTCTCCCCAATAAATCTGTGATGA  94

seq1  ATTGTCCATAAGGTCTCTTCAGAGACTGTCTTCAAACTCATTTTTTAACA  150
      | ||||||||||||||| ||||||||||||||| |||||| |||||||||
seq2  A-TGTCCATAAGGTCTC-TCAGAGACTGTCTTC-AACTCA-TTTTTAACA  140

seq1  AGACTAAGAACCTTCAGAGATGTCTTTGTGCCTGAGTGACATGAAGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAGAACCTTCAGAGATGTCTTTGTGCCTGAGTGACATGAAGTTAG  190

seq1  CTTTGGCTCTCAGGAAAATCTAAAGGTTTTCATCTTTTCTTTATAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCTCTCAGGAAAATCTAAAGGTTTTCATCTTTTCTTTATAACTTC  240

seq1  CCCCATCCAGACCACACCTTGGGATGTATTAATTTATGGATGCTACAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCCAGACCACACCTTGGGATGTATTAATTTATGGATGCTACAGCT  290

seq1  TGGGCATAGCTGTTTTGTGAGGAACTTACGGATAAAACTATATCTACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATAGCTGTTTTGTGAGGAACTTACGGATAAAACTATATCTACAGG  340

seq1  GAACTTCAGAAAATGCTGCCACTCGGAAAAATCTGTTAGATGGAGGGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCAGAAAATGCTGCCACTCGGAAAAATCTGTTAGATGGAGGGGTA  390

seq1  GGATGTAGAGGAGGAAGCAGTTGTTAGGAATAGGTACAGTAGCATGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTAGAGGAGGAAGCAGTTGTTAGGAATAGGTACAGTAGCATGTGTG  440

seq1  GCTTCTGGATATAAGAATGTTTTTATGGACTATGTGAGCACCTCCAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGATATAAGAATGTTTTTATGGACTATGTGAGCACCTCCAGATT  490

seq1  CAGTGGCAATAAGAACCCTGACAGAGTGGAGCCTTATTGATGACAAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCAATAAGAACCCTGACAGAGTGGAGCCTTATTGATGACAAGAAG  540

seq1  CACGGAGTCTGGAATGGCTTTTGTTATATTTAAGAAGATTGAGACATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGTCTGGAATGGCTTTTGTTATATTTAAGAAGATTGAGACATGAA  590

seq1  ATATAAATGCATATATAATATATAAATATCATTTAGCCTGTGCTTCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATGCATATATAATATATAAATATCATTTAGCCTGTGCTTCATTT  640

seq1  TAATGTTGATGGATAGCTTTCAAATTTCAAGGTCTGGAATGTTGTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTGATGGATAGCTTTCAAATTTCAAGGTCTGGAATGTTGTTTAAA  690

seq1  GTTATTCTGGCTACTAGATATTTAGGAATGAGCTTCTGGGATGCCATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCTGGCTACTAGATATTTAGGAATGAGCTTCTGGGATGCCATTCC  740

seq1  TTGTACTAGAAAGAGGTTAGAAAGGTAACATGCTGCCACTAGGAGGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTAGAAAGAGGTTAGAAAGGTAACATGCTGCCACTAGGAGGCCAT  790

seq1  CAATCAGGCAGGGACTGTATGTGGCCAGAGAAGAGTTCCTGGTAGAGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGGCAGGGACTGTATGTGGCCAGAGAAGAGTTCCTGGTAGAGGTG  840

seq1  ATGCTAGACTGGAATTGTGAAGGATAACTCCTTTTGGAGGGTGCTGGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGACTGGAATTGTGAAGGATAACTCCTTTTGGAGGGTGCTGGGTG  890

seq1  AAACTACACTTAGGTGGAGAATAGCAAGCACGCAGAACAGGCTGAGAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACACTTAGGTGGAGAATAGCAAGCACGCAGAACAGGCTGAGAAGT  940

seq1  ACTGAGAATAAAAATGTAGGAATGGAGAAAAGAAGGCAAGAGATAGTATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAATAAAAATGTAGGAATGGAGAAAAGAAGGCAAGAGATAGTATC  990

seq1  TAAAATCTAGGTGGGGGAAAGTCTATGTTCACGGGTGGCAAGAAGGGACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTAGGTGGGGGAAAGTCTATGTTCACGGGTGGCAAGAAGGGACT  1040

seq1  ATGGAGCAGGTTCACTAAGAATAGACCTAAAAATATGGTGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCAGGTTCACTAAGAATAGACCTAAAAATATGGTGAATTC  1085


seq1: chr6_3156181_3157274
seq2: B6Ng01-348C01.g_102_1194

seq1  TGTTCCCCAGCTGAAGAGTTCTGAATCCACGCAATTGAATCTTTCTCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCCAGCTGAAGAGTTCTGAATCCACGCAATTGAATCTTTCTCAAC  50

seq1  AGACTGCTTTGCGGGAACACTTCACTAACCGCTCAATCCCCATGATGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTTTGCGGGAACACTTCACTAACCGCTCAATCCCCATGATGCAG  100

seq1  TTCTGAATCCTCCCTGTAACAGGAGGTCTTCGCTCGTGCCTGAAGATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATCCTCCCTGTAACAGGAGGTCTTCGCTCGTGCCTGAAGATGTT  150

seq1  ACGTCCCGGGTTTCAGCACCACTCTGTGGTATGCCTGGCTCGCCAGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCCGGGTTTCAGCACCACTCTGTGGTATGCCTGGCTCGCCAGCAAG  200

seq1  AAAGACGCCACAGCAGGATCCTTCTGCAACACGTTTATTGGGAGAGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACGCCACAGCAGGATCCTTCTGCAACACGTTTATTGGGAGAGCATT  250

seq1  CACTGTGTAGGTAAAAGACCCCGAGCCCCAGAACTGGTGCTGTTTATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTAGGTAAAAGACCCCGAGCCCCAGAACTGGTGCTGTTTATATA  300

seq1  GGCCTAGGATTGACGTGTCCACACCTGATTGGTTGTGCCCTCAGCACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGGATTGACGTGTCCACACCTGATTGGTTGTGCCCTCAGCACCTC  350

seq1  ATTCACGTGCCTTGGGTCAGGCAGCGACTCAGCAAAAAACTCTATGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACGTGCCTTGGGTCAGGCAGCGACTCAGCAAAAAACTCTATGGCAC  400

seq1  ATGCACACATTGGCTGTTTACCCATATTCATGGGCGTCGGCTTATTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACATTGGCTGTTTACCCATATTCATGGGCGTCGGCTTATTGAAA  450

seq1  CCAGCACCATTTTGTAATGGCGTTTGTGGCTTCCCACATCTCTTGTAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCATTTTGTAATGGCGTTTGTGGCTTCCCACATCTCTTGTAATG  500

seq1  GCGTTTGCAGCTTCCCACACATCATCATGTGATAAACTGAAGTACAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTGCAGCTTCCCACACATCATCATGTGATAAACTGAAGTACAACAT  550

seq1  CAGGAGAAAATAAGTTCTAACCAGCAACAACAGACTACTGGTATCCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAAAATAAGTTCTAACCAGCAACAACAGACTACTGGTATCCCTCA  600

seq1  ACACATGTGGCAAAATATCTAAGTAGCAGCCTAGGCTTGGAACTGGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTGGCAAAATATCTAAGTAGCAGCCTAGGCTTGGAACTGGACAA  650

seq1  GGCTGTCTATTGTAGTAGGTCTGTACCAAAACTTGACAAATACATTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCTATTGTAGTAGGTCTGTACCAAAACTTGACAAATACATTCAGA  700

seq1  GTCAATGAACTATGAGAGACATTAAAAGTTTTAACAGTCCTTCCATATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGAACTATGAGAGACATTAAAAGTTTTAACAGTCCTTCCATATCC  750

seq1  CAAGGAGTTCTACATGACTAATATAACAAAGAAAGTGGCTCTCATAAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGTTCTACATGACTAATATAACAAAGAAAGTGGCTCTCATAAGCC  800

seq1  AGCAGAGCCTGTCAGTTTTCTCCTCCCCAAAGCTGCTCTGTGCCCTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCCTGTCAGTTTTCTCCTCCCCAAAGCTGCTCTGTGCCCTCACT  850

seq1  ATAGTGACAGATGATGACACTAAACGGCAAGAAATGTACCAGGCCTTGTA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATAGTGACAGATGATGACACTAAACGGCAAG-AATGTACCAGGCCTTGTA  899

seq1  CTTGAAATTGTTTGGAAAAGCATGTACTCAATTCAATGTTAACT-GTCCT  949
      |||||||||| ||||||||||||||||||||||| ||||||||| |||||
seq2  CTTGAAATTG-TTGGAAAAGCATGTACTCAATTCCATGTTAACTGGTCCT  948

seq1  TCATTCAGTTAAGAAAGATGA-GCCAAATAG-TCCTGAGAGGAATGAAAT  997
      ||||||||||||||||||||| ||||||||| ||||| |||  |||||||
seq2  TCATTCAGTTAAGAAAGATGAGGCCAAATAGTTCCTG-GAGAGATGAAAT  997

seq1  CTAT-CTGTAAAATGCAGGAAATAGTGGCTACCT-GAAGTGTC-ATTTAT  1044
      |||| ||||||| |||  ||||||||| |||||| |||| ||| ||||||
seq2  CTATCCTGTAAATTGCCAGAAATAGTGCCTACCTGGAAGGGTCAATTTAT  1047

seq1  TTTTAAATCACA-TTTTCTGTTGGAAAATAAGAGATGGGAAACAG-CACT  1092
      |||| ||||||| ||| |||| |  |||| ||||||||  ||||| ||||
seq2  TTTT-AATCACAGTTTCCTGTCG--AAAT-AGAGATGG--AACAGCCACT  1091

seq1  TC  1094
      ||
seq2  TC  1093


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