BAC Information

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BAC

Clone NameB6Ng01-348H08
Chromosome6 (Build37)
Map Location 78,331,229 - 78,332,320
singlet/doubletsinglet
Overlap geneReg3a
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d
Downstream geneReg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348H08.bB6Ng01-348H08.g
ACCGA129749GA129750
length1,2251,101
definitionB6Ng01-348H08.b B6Ng01-348H08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagcatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaggtaaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggataaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagaaaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacaactggttgttatcatgtagagatgtgaatcgatccatacttatctc
cttgtactaaggtcaaatctaggtggatcaggactcacaataaacagaag
acactgaaacctcatagaggagaaagtgggaaaagctttgagaattgggc
acaggggaaatctgaacgaaagcatgctgtgctgtagatcgagatggaca
tggactatggactcaagtctgcaggccaagcatcggtcataggacaaagt
catctacagactgggagggatcttc
gaattcctgtgtggtaattgtgagggatatccacacaggaaagtcaccta
cacttcatccatcctcttgccttcttctatgttgctggtgggaaaaaagt
atcatggtattccatcattccctgagtgagagggtttctatttgccagga
ggctctcaattatgatagtaagcatgtaggagaggagaagaaatatgtga
gtcactaatgaagcatgcaagtagaccttggggagaatggagtatcacag
acagtgaaatgtgtagaaagagtaaaatgaaaggaagctctttcacacta
tatatatatatttaaatgtggcacctagctaagtatagtacctagctaaa
tacataacttgaaaaccagcattcagggaggagtttcaggaggatacctc
tgagttcaaggccaacttcatctgcacagtaaattccaggacattcaggc
ctgcagagaaactttgtcacaaaggaagcagaagcaaacattcaagcaac
aggatcacaagatggaaagcttagtgaggctgtcaccaccttaattgtag
ccacccactctacaaaaaatgtcctttataaacattcccttgagtgttcc
tccccattcaattcccattctcggtgtcatgacatccctctcattatctc
tctccaccccaggtgaagacttccagaaggaagtgccctctccacgtacc
agctgccccatgggttacaaggcttatcgctcccactgctatgccttagt
tatgacacctaaatcctggtttcaagcagatgtgagtggtaaagggtggg
gttgaagataccagcacaaagtgcaagtaggtaacaggagagtagggctc
atgtttccatggttccatgggggggggagcgagtgggtcacaatattggt
tcttcctttttttttttctgtaatctttttgctcatgggacatctggagt
atcagtcttttctcgcccttctgtccctcatgtagctgggtctgccagaa
gagatcctcagacatctcgtgtctattcttaggtgaggtgaggctttcct
tttgtgtcttcttggtgaacgggcagaatggacaactaacaagaccatct
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78331229_78332320
seq2: B6Ng01-348H08.g_66_1166

seq1  GAATTCCTGTGTGGTAATTGTGAGGGATATCCACACAGGAAAGTCACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGTGGTAATTGTGAGGGATATCCACACAGGAAAGTCACCTA  50

seq1  CACTTCATCCATCCTCTTGCCTTCTTCTATGTTGCTGGTGGGAAAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCATCCATCCTCTTGCCTTCTTCTATGTTGCTGGTGGGAAAAAAGT  100

seq1  ATCATGGTATTCCATCATTCCCTGAGTGAGAGGGTTTCTATTTGCCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTATTCCATCATTCCCTGAGTGAGAGGGTTTCTATTTGCCAGGA  150

seq1  GGCTCTCAATTATGATAGTAAGCATGTAGGAGAGGAGAAGAAATATGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCAATTATGATAGTAAGCATGTAGGAGAGGAGAAGAAATATGTGA  200

seq1  GTCACTAATGAAGCATGCAAGTAGACCTTGGGGAGAATGGAGTATCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAATGAAGCATGCAAGTAGACCTTGGGGAGAATGGAGTATCACAG  250

seq1  ACAGTGAAATGTGTAGAAAGAGTAAAATGAAAGGAAGCTCTTTCACACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAAATGTGTAGAAAGAGTAAAATGAAAGGAAGCTCTTTCACACTA  300

seq1  TATATATATATTTAAATGTGGCACCTAGCTAAGTATAGTACCTAGCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATTTAAATGTGGCACCTAGCTAAGTATAGTACCTAGCTAAA  350

seq1  TACATAACTTGAAAACCAGCATTCAGGGAGGAGTTTCAGGAGGATACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAACTTGAAAACCAGCATTCAGGGAGGAGTTTCAGGAGGATACCTC  400

seq1  TGAGTTCAAGGCCAACTTCATCTGCACAGTAAATTCCAGGACATTCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAAGGCCAACTTCATCTGCACAGTAAATTCCAGGACATTCAGGC  450

seq1  CTGCAGAGAAACTTTGTCACAAAGGAAGCAGAAGCAAACATTCAAGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGAAACTTTGTCACAAAGGAAGCAGAAGCAAACATTCAAGCAAC  500

seq1  AGGATCACAAGATGGAAAGCTTAGTGAGGCTGTCACCACCTTAATTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCACAAGATGGAAAGCTTAGTGAGGCTGTCACCACCTTAATTGTAG  550

seq1  CCACCCACTCTACAAAAAATGTCCTTTATAAACATTCCCTTGAGTGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACTCTACAAAAAATGTCCTTTATAAACATTCCCTTGAGTGTTCC  600

seq1  TCCCCATTCAATTCCCATTCTCGGTGTCATGACATCCCTCTCATTATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATTCAATTCCCATTCTCGGTGTCATGACATCCCTCTCATTATCTC  650

seq1  TCTCCACCCCAGGTGAAGACTTCCAGAAGGAAGTGCCCTCTCCACGTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACCCCAGGTGAAGACTTCCAGAAGGAAGTGCCCTCTCCACGTACC  700

seq1  AGCTGCCCCATGGGTTACAAGGCTTATCGCTCCCACTGCTATGCCTTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCCCATGGGTTACAAGGCTTATCGCTCCCACTGCTATGCCTTAGT  750

seq1  TATGACACCTAAATCCTGGTTTCAAGCAGATGTGAGTGGTAAAGGGTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACACCTAAATCCTGGTTTCAAGCAGATGTGAGTGGTAAAGGGTGGG  800

seq1  GTTGAAGATACCAGCACAAAGTGCAAGTAGGTAACAGGAGAGTAGGGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGATACCAGCACAAAGTGCAAGTAGGTAACAGGAGAGTAGGGCTC  850

seq1  ATGTTTCCATGGTTCCAT-GGGGGGGGAGCGAGTGGGTCACAATATTGGT  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGTTTCCATGGTTCCATGGGGGGGGGAGCGAGTGGGTCACAATATTGGT  900

seq1  TCTTCC--TTTTTTTTTCTGTAATCTTTTTGCTCAT-GGACATCTGGAGT  946
      ||||||  |||||||||||||||||||||||||||| |||||||||||||
seq2  TCTTCCTTTTTTTTTTTCTGTAATCTTTTTGCTCATGGGACATCTGGAGT  950

seq1  ATCAGTC-TTTCTCG-CCTTCTGTCCCTCATGTAGCT-GGTCTGCCAGAA  993
      ||||||| ||||||| ||||||||||||||||||||| ||||||||||||
seq2  ATCAGTCTTTTCTCGCCCTTCTGTCCCTCATGTAGCTGGGTCTGCCAGAA  1000

seq1  GAGACCCTCAGGACATCTCGTGTCTATTCTTAGTGGAGGTGAGGCTT--C  1041
      |||| ||||| ||||||||||||||||||||||  ||||||||||||  |
seq2  GAGATCCTCA-GACATCTCGTGTCTATTCTTAGGTGAGGTGAGGCTTTCC  1049

seq1  CTTTGTGTCCTCCTTGGTGAAC-GGCAGAGTGGACAACTACCAAGA-CAT  1089
       ||||||| || |||||||||| |||||| |||||||||| ||||| |||
seq2  TTTTGTGT-CTTCTTGGTGAACGGGCAGAATGGACAACTAACAAGACCAT  1098

seq1  CTG  1092
      |||
seq2  CTG  1101