BAC Information

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BAC

Clone NameB6Ng01-348J05
Chromosome6 (Build37)
Map Location 5,359,226 - 5,360,397
singlet/doubletsinglet
Overlap geneAsb4
Upstream geneCol1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2
Downstream genePdk4, Dync1i1, Slc25a13, EG667462, EG667468, LOC667471
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348J05.bB6Ng01-348J05.g
ACCGA129830GA129831
length1,1701,177
definitionB6Ng01-348J05.b B6Ng01-348J05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacagagactttgtgcttccttgacctgatctgggacgcttaac
cattatatctgagttccagtagtttgaaaaaagtcacccaccatgaggtg
ttttggatgtcggctgggcagggtaaatgtgcttagtttaaaggacacac
acacacacacacacacacacacacacacacaacagttgatgcatctttgg
ctcccccaaagcaataatttattcccacttcatcattttctagcacacag
aagatctagttttgtaagcagacaacctaagtgagaacaattcagtcctt
tttaataggataatgcctttatatgggttttctgatttgctgcaacaata
caaggaggcggagggaagtgattgaagaagttatattaaaaatccattta
ttcattttccttaaaattaaactctgtaattaaaaatacctctttgatca
atttccaaattactgaaatttggaggaattgcaagatattaagtaacaaa
accagctgggtgggtgcaagtggaagctctgacttccagcaaggagaccc
tgtgagatgctaagcagcagatgcagcccgttgccaagcaaacccctgcc
tctaaactcacttgttattaagctgcttctttttaagcggtacccattag
caatccaattgccaattatttttacctacaagactattccaggatatttt
ctcaaattacaaattgtgaggtgttgccaacaggagtctccggcatcctc
aaaatcagttccctcttccggcaggctttctttagtttaagctcccccct
caaagccaaggcagcttcctctctaagctttcagactgggtgtgttatct
tcgccttatagctagaagcatctagaaccgggaaattaaaggatggcatt
ttctcgggcctgaatgactttattttttttccatcagcgcttctataatt
ttttcttgtttagaggagcctggacctcatatcctgtgaacactttaaac
acatttaagcagaaagaatatcagatttggaaacacaaggcacttgtttt
cttttgtaacctcctgccagtattgacttacagaagattatctaacattc
atcaagtgctcaaagacccagtttgaagtgccgttaatcggcaaggccct
ggaacctctcattctcagct
gaattcattgtgatcctcctgccacagtctctcaagtgacaagattataa
atgcgagcctataacgactggacttctctcaccttttgctgtataatgtt
ttggggctgtgttctttgttaaataaataaaaatatattattattaaaaa
aaattgccttgagtctcagaagagatttggatgttgcgtgttttttatac
tgtgttgagaaagtgaaagactatgcaactttggggttggattaaatgca
ctttgcattagatatggctacaaacctgtggcagccagggagtagaatgt
ggtagtttgaacaagactgcttcccataagctcttgggtttgaatatttg
atctctagttagtggaactttgggggaaggattggaaggtgtggccttgg
ttgaagtatgcgactgggggatggccactgagtgtctatatttgcctcct
actttggtatcaagatgtgagctttcagctcttacttctgccaagtctgg
ccatcatggattctagtcctctgaaaccataagcctcaaaacttacataa
tgtttctttttataagtttccttagtaatggtgttttatcacaataattg
aaatgtaactaagagaagacttgaggtgaaaaaaacctcttgtggtgtct
ccctatgctggaaagttttatgtcatcttggcaaaaaccggagtcattag
agaggaaggagtgtcagttgagaaaatatatccataagattaggctatag
ggaattctgtagggtattttcttaattggtgatctgcataggaaggccca
ggccattgtagtttgcaaccggttctatgagaaagcaggctaagcaagtg
atagaaacgaaataaagcccataagtcgcacttcctccatggactctgcg
tcaactcctggctctagggtcctatctagattgagttcctgccatcactg
cttttgataatgactgttatattgggaactgtgagtgaaataaacctcct
ttcttgccctaagatgccttttgatatgtgcttccatccaccagccaatt
agtgataaaggacattcccttagaaaggaatgcctccccgttggcctacc
taaaagagagaaaatgacacggatactgaatggattgcacacttcctgcc
tcaacaatcccaagtgaatttctcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_5359226_5360397
seq2: B6Ng01-348J05.b_50_1219

seq1  GAATTCTACAGAGACTTTGTGCTTCCTTGACCTGATCTGGGACGCTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGAGACTTTGTGCTTCCTTGACCTGATCTGGGACGCTTAAC  50

seq1  CATTATATCTGAGTTCCAGTAGTTTGAAAAAAGTCACCCACCATGAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATCTGAGTTCCAGTAGTTTGAAAAAAGTCACCCACCATGAGGTG  100

seq1  TTTTGGATGTCGGCTGGGCAGGGTAAATGTGCTTAGTTTAAAGGACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATGTCGGCTGGGCAGGGTAAATGTGCTTAGTTTAAAGGACACAC  150

seq1  ACACACACACACACACACACACACACACACAACAGTTGATGCATCTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACAACAGTTGATGCATCTTTGG  200

seq1  CTCCCCCAAAGCAATAATTTATTCCCACTTCATCATTTTCTAGCACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCAAAGCAATAATTTATTCCCACTTCATCATTTTCTAGCACACAG  250

seq1  AAGATCTAGTTTTGTAAGCAGACAACCTAAGTGAGAACAATTCAGTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTAGTTTTGTAAGCAGACAACCTAAGTGAGAACAATTCAGTCCTT  300

seq1  TTTAATAGGATAATGCCTTTATATGGGTTTTCTGATTTGCTGCAACAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAGGATAATGCCTTTATATGGGTTTTCTGATTTGCTGCAACAATA  350

seq1  CAAGGAGGCGGAGGGAAGTGATTGAAGAAGTTATATTAAAAATCCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGCGGAGGGAAGTGATTGAAGAAGTTATATTAAAAATCCATTTA  400

seq1  TTCATTTTCCTTAAAATTAAACTCTGTAATTAAAAATACCTCTTTGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCCTTAAAATTAAACTCTGTAATTAAAAATACCTCTTTGATCA  450

seq1  ATTTCCAAATTACTGAAATTTGGAGGAATTGCAAGATATTAAGTAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAATTACTGAAATTTGGAGGAATTGCAAGATATTAAGTAACAAA  500

seq1  ACCAGCTGGGTGGGTGCAAGTGGAAGCTCTGACTTCCAGCAAGGAGACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTGGGTGGGTGCAAGTGGAAGCTCTGACTTCCAGCAAGGAGACCC  550

seq1  TGTGAGATGCTAAGCAGCAGATGCAGCCCGTTGCCAAGCAAACCCCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATGCTAAGCAGCAGATGCAGCCCGTTGCCAAGCAAACCCCTGCC  600

seq1  TCTAAACTCACTTGTTATTAAGCTGCTTCTTTTTAAGCGGTACCCATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACTCACTTGTTATTAAGCTGCTTCTTTTTAAGCGGTACCCATTAG  650

seq1  CAATCCAATTGCCAATTATTTTTACCTACAAGACTATTCCAGGATATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAATTGCCAATTATTTTTACCTACAAGACTATTCCAGGATATTTT  700

seq1  CTCAAATTACAAATTGTGAGGTGTTGCCAACAGGAGTCTCCGGCATCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATTACAAATTGTGAGGTGTTGCCAACAGGAGTCTCCGGCATCCTC  750

seq1  AAAATCAGTTCCCTCTTCCGGCAGGCTTTCTTTAGTTTAAGCTCCCCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGTTCCCTCTTCCGGCAGGCTTTCTTTAGTTTAAGCTCCCCCCT  800

seq1  CAAAGCCAAGGCAGCTTCCTCTCTAAGCTTTCAGACTGGGTGTGTTATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCAAGGCAGCTTCCTCTCTAAGCTTTCAGACTGGGTGTGTTATCT  850

seq1  TCGCCTTATAGCTAGAAGCATCTAGAA-CGGGAAATTAAAGGATGGCATT  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCGCCTTATAGCTAGAAGCATCTAGAACCGGGAAATTAAAGGATGGCATT  900

seq1  TTCTCGGGCCTGAATGACTTTATTTTTTTTCCATCAGCGCTTCTATAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGGGCCTGAATGACTTTATTTTTTTTCCATCAGCGCTTCTATAATT  950

seq1  TTTTCTTGTTTAGAGGAGCCTGGACCTCATTATCCTGTGAACACTTTAAA  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTCTTGTTTAGAGGAGCCTGGACCTCA-TATCCTGTGAACACTTTAAA  999

seq1  CACCATTTAGCAGAAAG-ATATCAGATTTGGAAACACAAAGGCAC-TGTT  1047
      |||  || ||||||||| ||||||||||||||||||| ||||||| ||||
seq2  CACATTTAAGCAGAAAGAATATCAGATTTGGAAACAC-AAGGCACTTGTT  1048

seq1  TTC-TTTGTAACCT-CTGCAAGTAATGACTTACAGAAGATAATCTAAACA  1095
      ||| |||||||||| |||| |||| ||||||||||||||| |||| ||||
seq2  TTCTTTTGTAACCTCCTGCCAGTATTGACTTACAGAAGATTATCT-AACA  1097

seq1  ATTTCATCAGGTGCTCAAGGACCCAGGTTTGGAGGTGCCGGTTAAATCGA  1145
        ||||||| |||||||| |||||||  || || ||||||  | ||||| 
seq2  --TTCATCAAGTGCTCAAAGACCCAG--TTTGAAGTGCCG--TTAATCGG  1141

seq1  CAAGGCCCT-GAGACTCTCA-TCTCAGCT  1172
      ||||||||| ||  |||||| ||||||||
seq2  CAAGGCCCTGGAACCTCTCATTCTCAGCT  1170