BAC Information

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BAC

Clone NameB6Ng01-348M07
Chromosome6 (Build37)
Map Location 46,400,987 - 46,402,149
singlet/doubletsinglet
Overlap geneCntnap2
Upstream genenone
Downstream geneRbpsuh-rs3, LOC622745, LOC100041064, LOC100041078, A930035D04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348M07.bB6Ng01-348M07.g
ACCGA129960GA129961
length1,171840
definitionB6Ng01-348M07.b B6Ng01-348M07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacatttactacctttacaaccagcaatgtggtctggagagaaa
ttactttagttctttaggcatttgtttataaaaatagatttatttaattt
tatgtgtatgaggttttacatacatgtatgtctatgtactgtgtatattc
cgagtactcgtagaaacaagaaaagttgttggagctcatagaactggagt
tactgatagttgtgagcagtcatgtgggtcctaggaagagaagctgggtc
atcttcaagagcagaaaatgtccctaaccttgagctataaatccagtccc
aggtttttgctttttaagccaagcaaaaaggaagaactcgtttgtcctaa
ggaaacattttattccacatgcctatggttctactaatatgatagcaaaa
attctttttaatttatattttaagcaaataggtaaaaaataataaatgtt
taaaatacaggattacattttggagtctgaacattctctttaggtttcaa
atgccaattattttctatatgaagcaatcaccttatccctttataatgca
gagcagtgttcttgatttaatggctagttgctatgtcccctttgttatct
ctacaattaaagaagctgtaaaaccagaccatgaaccagtatagatgcct
gaaccatgaataagtgatgaggcccctgtcaatagaccagctgctggcca
gcacttgtgaggttgtctgaattattgatgccataccacagctcccatca
atggcagttctctgaggaggctcacaaagtctgtctgttaacatcaggct
ggcacagctgtctttttgttactgtgtaatgaaataccttatatggacaa
ctctgattaccttgattccaattgattattgtactgataaagggaagaaa
gtttttataggttaacaattttcttagacagtcaagaattaaaacttgag
gcatatttctcatttgttattaagtcattcaaatctctggggcaccatat
tcagagggtaatatgggggtggacacacacattgagattctagcatggta
catggtgatttttggagggaaaacttcttcagcagtaggcgactccttgg
tggaggctttgtttgaaaatctcagttgggaagggctaggagaatgaaca
ttctctttcctgggattgaga

gaattcattgctcagctctgaaccccatttttaatggggttatttgattt
tctagagtccaccattttgagttctttatatatattggatactagtcccc
tatctgatttaggttaggtaaagatcctttcccaatctgttggtggtata
tttgcccagaaacttaggatacccaagatataagatacaatttgctaaac
gcatgaaactcaagaagaacgaagaccaaagtgtggacactttgcccctt
cttagaattgggaacaaaacacccacggaaggagttacagagacaaaatt
tggagctgtgatgaaaggatggatcatctagagactgccatatccgggga
tccatcccataatcagcctccaaacgctgacaccattgcatacactagca
agattttgctgaaaggacccagatagagctgtctctggtgagactatgcc
agggcctagcaaacacagaagtggatgctcacagtcagctattggatgga
tcacagggcccccaatggaggagctagagaaagtacccaaggatctaaag
ggatctgcaaccctatggtggaacaatattatgaactaaccagtacccgg
gagctcttgactctagctgcatatatatcaaaagatggcctagttggcca
tcactggaaagagaggcccattggacttgcaaacattatatgccccagca
caggggaacgccagggccaaaaggtggaagtacgtggataggggagttgg
gggggaaggtatggggaacttttgggatagcattggaaatgttcatgatg
aaaatacctagttagagaatataaaataaaactattgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_46400987_46402149
seq2: B6Ng01-348M07.b_46_1216 (reverse)

seq1  TCTC-ATCCCAGG-AAGAG-ATGTTCA-TCT-CTAGCC--TTCCAACTGG  43
      |||| |||||||| ||||| ||||||| ||| ||||||  | |||||| |
seq2  TCTCAATCCCAGGAAAGAGAATGTTCATTCTCCTAGCCCTTCCCAACT-G  49

seq1  AGATTTTTCAAACAAAG-CTTCAACAAGGAGTCG-CTACTGCTGGAAGAG  91
      ||| ||||||||||||| || || |||||||||| |||||||| ||||| 
seq2  AGA-TTTTCAAACAAAGCCTCCACCAAGGAGTCGCCTACTGCT-GAAGAA  97

seq1  GTTTTCCCT-CAAAAATCACCATGTACCATGCTAGAATCTCAATGTGTGT  140
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCTCCAAAAATCACCATGTACCATGCTAGAATCTCAATGTGTGT  147

seq1  GTCCA-CCCCATA-TACCCTCTGAATATGGTGCCCCAGAGATTTGAATGA  188
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTCCACCCCCATATTACCCTCTGAATATGGTGCCCCAGAGATTTGAATGA  197

seq1  CTTAATAACAAATGAGAAATATTGCCTCAAGTTTTAATTCTTGACTGTCT  238
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTAATAACAAATGAGAAATA-TGCCTCAAGTTTTAATTCTTGACTGTCT  246

seq1  AAGAAAATTGTTAACCTATAAAAACTTTCTTCCCTTTATCAGTACAATAA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATTGTTAACCTATAAAAACTTTCTTCCCTTTATCAGTACAATAA  296

seq1  TCAATTGGAATCAAGGTAATCAGAGTTGTCCATATAAGGTATTTCATTAC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGGAATCAAGGTAATCAGAGTTGTCCATATAAGGTATTTCATTAC  346

seq1  ACAGTAACAAAAAGACAGCTGTGCCAGCCTGATGTTAACAGACAGACTTT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACAAAAAGACAGCTGTGCCAGCCTGATGTTAACAGACAGACTTT  396

seq1  GTGAGCCTCCTCAGAGAACTGCCATTGATGGGAGCTGTGGTATGGCATCA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCTCCTCAGAGAACTGCCATTGATGGGAGCTGTGGTATGGCATCA  446

seq1  ATAATTCAGACAACCTCACAAGTGCTGGCCAGCAGCTGGTCTATTGACAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCAGACAACCTCACAAGTGCTGGCCAGCAGCTGGTCTATTGACAG  496

seq1  GGGCCTCATCACTTATTCATGGTTCAGGCATCTATACTGGTTCATGGTCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCATCACTTATTCATGGTTCAGGCATCTATACTGGTTCATGGTCT  546

seq1  GGTTTTACAGCTTCTTTAATTGTAGAGATAACAAAGGGGACATAGCAACT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTACAGCTTCTTTAATTGTAGAGATAACAAAGGGGACATAGCAACT  596

seq1  AGCCATTAAATCAAGAACACTGCTCTGCATTATAAAGGGATAAGGTGATT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTAAATCAAGAACACTGCTCTGCATTATAAAGGGATAAGGTGATT  646

seq1  GCTTCATATAGAAAATAATTGGCATTTGAAACCTAAAGAGAATGTTCAGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATATAGAAAATAATTGGCATTTGAAACCTAAAGAGAATGTTCAGA  696

seq1  CTCCAAAATGTAATCCTGTATTTTAAACATTTATTATTTTTTACCTATTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAATGTAATCCTGTATTTTAAACATTTATTATTTTTTACCTATTT  746

seq1  GCTTAAAATATAAATTAAAAAGAATTTTTGCTATCATATTAGTAGAACCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAATATAAATTAAAAAGAATTTTTGCTATCATATTAGTAGAACCA  796

seq1  TAGGCATGTGGAATAAAATGTTTCCTTAGGACAAACGAGTTCTTCCTTTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATGTGGAATAAAATGTTTCCTTAGGACAAACGAGTTCTTCCTTTT  846

seq1  TGCTTGGCTTAAAAAGCAAAAACCTGGGACTGGATTTATAGCTCAAGGTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCTTAAAAAGCAAAAACCTGGGACTGGATTTATAGCTCAAGGTT  896

seq1  AGGGACATTTTCTGCTCTTGAAGATGACCCAGCTTCTCTTCCTAGGACCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACATTTTCTGCTCTTGAAGATGACCCAGCTTCTCTTCCTAGGACCC  946

seq1  ACATGACTGCTCACAACTATCAGTAACTCCAGTTCTATGAGCTCCAACAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACTGCTCACAACTATCAGTAACTCCAGTTCTATGAGCTCCAACAA  996

seq1  CTTTTCTTGTTTCTACGAGTACTCGGAATATACACAGTACATAGACATAC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTGTTTCTACGAGTACTCGGAATATACACAGTACATAGACATAC  1046

seq1  ATGTATGTAAAACCTCATACACATAAAATTAAATAAATCTATTTTTATAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTAAAACCTCATACACATAAAATTAAATAAATCTATTTTTATAA  1096

seq1  ACAAATGCCTAAAGAACTAAAGTAATTTCTCTCCAGACCACATTGCTGGT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCCTAAAGAACTAAAGTAATTTCTCTCCAGACCACATTGCTGGT  1146

seq1  TGTAAAGGTAGTAAATGTGGAATTC  1163
      |||||||||||||||||||||||||
seq2  TGTAAAGGTAGTAAATGTGGAATTC  1171


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