BAC Information

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BAC

Clone NameB6Ng01-349C24
Chromosome6 (Build37)
Map Location 57,717,480 - 57,718,614
singlet/doubletsinglet
Overlap geneAW146242
Upstream geneKbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2
Downstream geneV1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349C24.bB6Ng01-349C24.g
ACCGA130251GA130252
length1,1851,130
definitionB6Ng01-349C24.b B6Ng01-349C24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatgctttctcagcatctaatgagatgatcatgtggcttttgtcttt
gagtttgtttatatactggattatgttgatggatttccctatattgaacc
atccctgcatccctgggaggaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggattcagttagcaagaactttattgaggatttttgc
atcaatattcataagggatattggtctgaagttctctatctttgtggggt
ctttttgtggtttaggtattagagtaattgtggcttcatagaatgagttg
ggtagagtaccttctgtttctagtttgtggaatagtttgtgaagaactgg
gattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtactgggctttttttggttgggagactattaatgactgcttctatttct
ttggaggatatcaggctgtttagatcattaacctaatcttgattcaactt
tggtacctggtatctgtctagaaacttctccatttcatccaggttctcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcatcaggatctgttgttatgtctcccttttcatttctgattttgttaat
tataatgctttccctgtgccctctagtgagtctggctaagggtttgtcta
tcttgttgattttctcaaagaaccagttcctcgaatggttgattctctga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgctgtctactcctcttgggtgaatttgctttccttttgttctaga
gcttttaggagtgttgtcaagctgctaatgtatgctctctctagtttctt
ttgggaggcactcagagctatgagtttcctctagaaatgcttttcattgt
gtcccaataagttgggtatgaaagtggcttcattttcattgactctaaga
aagtcttatttctttcttattcttctgaccaaggtaatcatttgaaaaga
gtgtggttcaattccaagtgtgaaggtggccttccatattaatttgttat
taaagatccagcccttggtgcccacatgtgggtga
gaattctcattcacaagatcaagacgttcagcaaaacaagccagactgag
acaagcattacatgtgttctttcagttgttccctagatttacttatagac
acataaaaacatttccgtacacagtgtgaaagaagactacaggaaagaga
ttagtggggtatgaaggtgttccacacacaggatataattgaaagagatt
gtctttatgggacccagcactatgtactgggaaaacaccaacttaaaatg
aagtaagtacaactctggaaaagaagatgaacttttctgcccaaacttcc
aaatgtaagaatttgtttatctcaaaacaaaaaggaaacacagcaaagga
cacttcagcctatggcctggattcaaggcatgccctcatttagtaatctt
ctttctgaggctcaatggaagaggcaggactacagtgcaaagaaccctaa
tcctaggaggagtcatgggtatgcattatatgcagtatattagggttatt
aggaatgtctctaaaaatggttaaacttgtcagaatgggtgttgagaaat
gagagagagagagagagatcttgtttgtttgtttgtttgtttgtttgttt
ttcgagacagggtttctctgtatagccctggctgtcctggaactcagttt
gtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccg
agtgctgggattaaaggcgtgctccaccatgcctggctgtgagagagaga
gagagagagagagagagagagagagagagagagagagagatcttacaggg
atctatgtgcttttgatttctaggctagggcacctgctagtggtggggta
aacagtgaggctatgcatggtgtttggcagtatcttcacacagactgaag
catttgtgagtccacaactttgctcttacaaaggccagaggtgccagctg
caaagagtgattaggttatcagaggtttcaattatggcacagttacactg
aaggatataaggcaagaattgcctagaatggactcttgaagtgcctagtc
aaaacataagcgcccttgggctgaaccaacgtctccctctgtaaactcat
gcttagattcctgggctcctagaagagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_57717480_57718614
seq2: B6Ng01-349C24.g_66_1195 (reverse)

seq1  AGTCT-TTCTAGAGAAGCCCAGGAATCTTAAGCACTGAATGTTTACAGAG  49
      ||||| ||||  || |||||||||||| |||||| |||  ||||||||||
seq2  AGTCTCTTCT--AGGAGCCCAGGAATC-TAAGCA-TGA--GTTTACAGAG  44

seq1  AGAAGAAACGTATGGGTCAG-CCAAGGGCGCTTATGTTTTGACTAGGGCA  98
          || |||| ||| |||| |||||||||||||||||||||||| ||||
seq2  ---GGAGACGT-TGGTTCAGCCCAAGGGCGCTTATGTTTTGACTA-GGCA  89

seq1  CTTC-AGAGTCCATTTCTAGGC-ATTCTGGC--TATAT-CTTCAGTTGTA  143
      |||| |||||||| |||||||| ||||| ||  ||||| |||||| ||||
seq2  CTTCAAGAGTCCA-TTCTAGGCAATTCTTGCCTTATATCCTTCAG-TGTA  137

seq1  ACTTGTGCCATAATTGAAA-CTCTGATAACCTAATCAACTCTTTGGCAGC  192
      || |||||||||||||||| |||||||||||||||| ||||||| |||||
seq2  AC-TGTGCCATAATTGAAACCTCTGATAACCTAATC-ACTCTTT-GCAGC  184

seq1  TGGCA-CTCTGGCC-TTGTAAGAGCAAAGTTGTGGGACTCACAAATGCTT  240
      ||||| |||||||| |||||||||||||||||| ||||||||||||||||
seq2  TGGCACCTCTGGCCTTTGTAAGAGCAAAGTTGT-GGACTCACAAATGCTT  233

seq1  CAGTCTGTGTG-AGATACTGCCAAACACCATGCATAGCCTCACTG-TTAC  288
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  CAGTCTGTGTGAAGATACTGCCAAACACCATGCATAGCCTCACTGTTTAC  283

seq1  CCCACCACTAGCAGGTGCCCTAGCCTAGAAATCAAAAGCACATAGATCCC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACTAGCAGGTGCCCTAGCCTAGAAATCAAAAGCACATAGATCCC  333

seq1  TGTAAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  383

seq1  CTCTCTCACAGCCAGGCATGGTGGAGCACGCCTTTAATCCCAGCACTCGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCACAGCCAGGCATGGTGGAGCACGCCTTTAATCCCAGCACTCGG  433

seq1  GAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA  483

seq1  CTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAA  533

seq1  CAAACAAACAAACAAACAAACAAACAAGATCTCTCTCTCTCTCTCTCATT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAACAAACAAGATCTCTCTCTCTCTCTCTCATT  583

seq1  TCTCAACACCCATTCTGACAAGTTTAACCATTTTTAGAGACATTCCTAAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACACCCATTCTGACAAGTTTAACCATTTTTAGAGACATTCCTAAT  633

seq1  AACCCTAATATACTGCATATAATGCATACCCATGACTCCTCCTAGGATTA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAATATACTGCATATAATGCATACCCATGACTCCTCCTAGGATTA  683

seq1  GGGTTCTTTGCACTGTAGTCCTGCCTCTTCCATTGAGCCTCAGAAAGAAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTTGCACTGTAGTCCTGCCTCTTCCATTGAGCCTCAGAAAGAAG  733

seq1  ATTACTAAATGAGGGCATGCCTTGAATCCAGGCCATAGGCTGAAGTGTCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAAATGAGGGCATGCCTTGAATCCAGGCCATAGGCTGAAGTGTCC  783

seq1  TTTGCTGTGTTTCCTTTTTGTTTTGAGATAAACAAATTCTTACATTTGGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTGTTTCCTTTTTGTTTTGAGATAAACAAATTCTTACATTTGGA  833

seq1  AGTTTGGGCAGAAAAGTTCATCTTCTTTTCCAGAGTTGTACTTACTTCAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGCAGAAAAGTTCATCTTCTTTTCCAGAGTTGTACTTACTTCAT  883

seq1  TTTAAGTTGGTGTTTTCCCAGTACATAGTGCTGGGTCCCATAAAGACAAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTGGTGTTTTCCCAGTACATAGTGCTGGGTCCCATAAAGACAAT  933

seq1  CTCTTTCAATTATATCCTGTGTGTGGAACACCTTCATACCCCACTAATCT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAATTATATCCTGTGTGTGGAACACCTTCATACCCCACTAATCT  983

seq1  CTTTCCTGTAGTCTTCTTTCACACTGTGTACGGAAATGTTTTTATGTGTC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGTAGTCTTCTTTCACACTGTGTACGGAAATGTTTTTATGTGTC  1033

seq1  TATAAGTAAATCTAGGGAACAACTGAAAGAACACATGTAATGCTTGTCTC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTAAATCTAGGGAACAACTGAAAGAACACATGTAATGCTTGTCTC  1083

seq1  AGTCTGGCTTGTTTTGCTGAACGTCTTGATCTTGTGAATGAGAATTC  1135
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGCTTGTTTTGCTGAACGTCTTGATCTTGTGAATGAGAATTC  1130