BAC Information

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BAC

Clone NameB6Ng01-349E05
Chromosome6 (Build37)
Map Location 122,512,825 - 122,574,484
singlet/doubletdoublet
Overlap geneAicda, LOC667105, Apobec1, Gdf3
Upstream geneLOC100043486, A2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5
Downstream geneDppa3, EG667107, LOC100043805, Nanog, LOC100038891, Slc2a3, LOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349E05.bB6Ng01-349E05.g
ACCGA130307GA130308
length1,242514
definitionB6Ng01-349E05.b B6Ng01-349E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,512,825 - 122,514,071)(122,573,965 - 122,574,484)
sequence
gaattctcaggggtatcagtgacggattcttgctattctttccctctaag
gctcactttcaggggtccttttctgacaaggtcacggggctgtcctacag
tctctgtctgagcaatcacaagccattctctcaaaagcattaatactcag
gcacatgctgtatgttttcactgtccgtcgtgtttttcacatttgtatgt
gaaagggcttggggtgggatttgaagaatgcacgatcgcctctgggtgat
ttcaataaaggatcttaaaatgcagatgaggactacgaagaaatcactct
gaaaatgagttcacgcctcaagaagcaaatcccctggaaacacagactct
ttttcatttttaatgtcattagtttactcacagtcttatcaagaagaaga
gttcaagggttcaacccaattttcagatcgcgtcccttaaacatcagtaa
ttctgttaaagggatcaaacatccttatttcttaactaactggtgccttg
ctgtagagaaaggagcaaagcgcccagatccaaagtatatagttatcata
gccaggaaccgctactcgttttccattacaaatggcaaattcttccccgg
gctctcctcatagtgcctgagacggaccacggaggtgatgaacctccgga
ttctctggcccaacacggtggaagctctgcaagggcgcagagacagaatg
cggcagaaattgcccccgagtcccaactctcctttccttgcgaccttggg
aacaagacttaaaggagcctgtgacttagaaacttctagtaatgggtacc
tgggagtcgtttgagtatggggcagtgatttattctctgtgatggatgcc
aacacggttaaacagaattttttagtttttatatgtgtgtgatgctgctc
ccccaaattgttaactgtgttagagggtggcaaaatagggaaagtggcat
tcacctatagttccagcattcaggaagctgaggcaggaggattgtaaatt
tgaggccagtctgagctgtaaggtgagaccctatttcaaacacacagcca
gattgggttctggtaattcatacttacatggaaaatgcagacgcagaccg
tggcaaggaattgacgctttggcccacgaaatgtaggaaaccaactagac
tcccagtttgtcctcttttatgtctgatctcctacacgatctttgctaat
gaagaaaatttagaaataaatattcctggtgggcgcaattat
cattgtagaagttagagaaaatccaacagacaggcctggtggactcttga
gccttaatagtatgggacttgccctgcaggcatgaagccttagtttctgg
tcccagccatgcaaaattaaagaagcaacggacacccctgagataccata
accagtccaattcatgtaatctttatgtttccttccctccctccctcctt
ccttccttccttccttcctttctttccttctttcttccttccttcctttc
tttccttccttccttccttccttccttccttcctctctctctctctctct
ctctctttttcagtttttcaagacagggtttttctgtgtagccttggctg
tcctggaactcactctgtagcccaggctggcctcaaactcagaaatctgc
ctgcctctacctcctgagtgctgggattaaaggcgtgcgccactctttat
attttcatatctttaaaattacaattatgttgtggtgtgtgtgtgtgtgt
gtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_122512825_122514071
seq2: B6Ng01-349E05.b_43_1284

seq1  GAATTCTCAGGGGTATCAGTGACGGATTCTT-CTATTCTTTCCCTCTAAG  49
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATTCTCAGGGGTATCAGTGACGGATTCTTGCTATTCTTTCCCTCTAAG  50

seq1  GCTCACTTTCAGGGGTCCTTTTCTGACAAGGTCACGGGGCTGTCCTACAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTTCAGGGGTCCTTTTCTGACAAGGTCACGGGGCTGTCCTACAG  100

seq1  TCTCTGTCTGAGCAATCACAAGCCATTCTCTCAAAAGCATTAATACTCAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTGAGCAATCACAAGCCATTCTCTCAAAAGCATTAATACTCAG  150

seq1  GCACATGCTGTATGTTTTCACTGTCCGTCGTGTTTTTCACATTTGTATGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCTGTATGTTTTCACTGTCCGTCGTGTTTTTCACATTTGTATGT  200

seq1  GAAAGGGCTTGGGGTGGGATTTGAAGAATGCACGATCGCCTCTGGGTGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGCTTGGGGTGGGATTTGAAGAATGCACGATCGCCTCTGGGTGAT  250

seq1  TTCAATAAAGGATCTTAAAATGCAGATGAGGACTACGAAGAAATCACTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAAGGATCTTAAAATGCAGATGAGGACTACGAAGAAATCACTCT  300

seq1  GAAAATGAGTTCACGCCTCAAGAAGCAAATCCCCTGGAAACACAGACTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAGTTCACGCCTCAAGAAGCAAATCCCCTGGAAACACAGACTCT  350

seq1  TTTTCATTTTTAATGTCATTAGTTTACTCACAGTCTTATCAAGAAGAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTTTAATGTCATTAGTTTACTCACAGTCTTATCAAGAAGAAGA  400

seq1  GTTCAAGGGTTCAACCCAATTTTCAGATCGCGTCCCTTAAACATCAGTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGGTTCAACCCAATTTTCAGATCGCGTCCCTTAAACATCAGTAA  450

seq1  TTCTGTTAAAGGGATCAAACATCCTTATTTCTTAACTAACTGGTGCCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTAAAGGGATCAAACATCCTTATTTCTTAACTAACTGGTGCCTTG  500

seq1  CTGTAGAGAAAGGAGCAAAGCGCCCAGATCCAAAGTATATAGTTATCATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGAAAGGAGCAAAGCGCCCAGATCCAAAGTATATAGTTATCATA  550

seq1  GCCAGGAACCGCTACTCGTTTTCCATTACAAATGGCAAATTCTTCCCCGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAACCGCTACTCGTTTTCCATTACAAATGGCAAATTCTTCCCCGG  600

seq1  GCTCTCCTCATAGTGCCTGAGACGGACCACGGAGGTGATGAACCTCCGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTCATAGTGCCTGAGACGGACCACGGAGGTGATGAACCTCCGGA  650

seq1  TTCTCTGGCCCAACACGGTGGAAGCTCTGCAAGGGCGCAGAGACAGAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGCCCAACACGGTGGAAGCTCTGCAAGGGCGCAGAGACAGAATG  700

seq1  CGGCAGAAATTGCCCCCGAGTCCCAACTCTCCTTTCCTTGCGACCTTGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGAAATTGCCCCCGAGTCCCAACTCTCCTTTCCTTGCGACCTTGGG  750

seq1  AACAAGACTTAAAGGAGCCTGTGACTTAGAAACTTCTAGTAATGGGTACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGACTTAAAGGAGCCTGTGACTTAGAAACTTCTAGTAATGGGTACC  800

seq1  TGGGAGTCGTTTGAGTATGGGGCAGTGATTTATTCTCTGTGATGGATGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCGTTTGAGTATGGGGCAGTGATTTATTCTCTGTGATGGATGCC  850

seq1  AACACGGTTAAACAGAA-TTTTTAGTTTTTATATGTGTGTGATGCTGCTC  898
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACACGGTTAAACAGAATTTTTTAGTTTTTATATGTGTGTGATGCTGCTC  900

seq1  CCCCAAATTGTTAACTGTGTAAGAGGGTGGCAAAATAGGGAAAGTGGCAT  948
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCCCAAATTGTTAACTGTGTTAGAGGGTGGCAAAATAGGGAAAGTGGCAT  950

seq1  TCACCTATAGTTCCAGCATTCAGGAAGCTGAGGCAGGAGGATTGTAAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTATAGTTCCAGCATTCAGGAAGCTGAGGCAGGAGGATTGTAAATT  1000

seq1  TGAGGCCAGTCTGAGCTGTAAGGTGAGACCCTATTTCAAACAACACAGCC  1048
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGAGGCCAGTCTGAGCTGTAAGGTGAGACCCTATTTCAAAC-ACACAGCC  1049

seq1  AGAATTGGGTTCTGGTAAATCATACTTAACAAGGGAAAAATGCAAGACGC  1098
      || ||||||||||||||| |||||||| ||| ||  ||||||| ||||||
seq2  AG-ATTGGGTTCTGGTAATTCATACTT-ACATGG--AAAATGC-AGACGC  1094

seq1  AAGACCGTGGCAAGGAAATGACGCTTTGCCCAACGAAATGTAGGAAACCA  1148
       |||||||||||||||| |||||||||| || ||||||||||||||||||
seq2  -AGACCGTGGCAAGGAATTGACGCTTTGGCCCACGAAATGTAGGAAACCA  1143

seq1  ACATAGACTCCCAGTTTGTCCCTCTTTATGTCTGGTCTCCCTAACAACGA  1198
      || ||||||||||||||||||   |||||||||| ||| ||||   ||||
seq2  AC-TAGACTCCCAGTTTGTCCTCTTTTATGTCTGATCT-CCTA--CACGA  1189

seq1  TCTTTGCTAATGAGAAAAATATTAGAAAAAAATATCCCT-----GTGCAA  1243
      |||||||||||||  ||||| ||||||| |||||| |||     | ||||
seq2  TCTTTGCTAATGAAGAAAAT-TTAGAAATAAATATTCCTGGTGGGCGCAA  1238

seq1  TTAT  1247
      ||||
seq2  TTAT  1242

seq1: chr6_122573965_122574484
seq2: B6Ng01-349E05.g_67_586 (reverse)

seq1  ACACACACACACACACACACACACACACACCACAACATAATTGTAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACCACAACATAATTGTAATTTT  50

seq1  AAAGATATGAAAATATAAAGAGTGGCGCACGCCTTTAATCCCAGCACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATGAAAATATAAAGAGTGGCGCACGCCTTTAATCCCAGCACTCA  100

seq1  GGAGGTAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGGCTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGGCTACAG  150

seq1  AGTGAGTTCCAGGACAGCCAAGGCTACACAGAAAAACCCTGTCTTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTCCAGGACAGCCAAGGCTACACAGAAAAACCCTGTCTTGAAAA  200

seq1  ACTGAAAAAGAGAGAGAGAGAGAGAGAGAGAGGAAGGAAGGAAGGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAAGAGAGAGAGAGAGAGAGAGAGAGGAAGGAAGGAAGGAAGGA  250

seq1  AGGAAGGAAGGAAAGAAAGGAAGGAAGGAAGAAAGAAGGAAAGAAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAAGAAAGGAAGGAAGGAAGAAAGAAGGAAAGAAAGGAA  300

seq1  GGAAGGAAGGAAGGAAGGAGGGAGGGAGGGAAGGAAACATAAAGATTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAGGGAGGGAGGGAAGGAAACATAAAGATTACA  350

seq1  TGAATTGGACTGGTTATGGTATCTCAGGGGTGTCCGTTGCTTCTTTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGGACTGGTTATGGTATCTCAGGGGTGTCCGTTGCTTCTTTAATT  400

seq1  TTGCATGGCTGGGACCAGAAACTAAGGCTTCATGCCTGCAGGGCAAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGGCTGGGACCAGAAACTAAGGCTTCATGCCTGCAGGGCAAGTCC  450

seq1  CATACTATTAAGGCTCAAGAGTCCACCAGGCCTGTCTGTTGGATTTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTATTAAGGCTCAAGAGTCCACCAGGCCTGTCTGTTGGATTTTCTC  500

seq1  TAACTTCTACAATGGAATTC  520
      ||||||||||||||||||||
seq2  TAACTTCTACAATGGAATTC  520