BAC Information

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BAC

Clone NameB6Ng01-349J02
Chromosome6 (Build37)
Map Location 4,286,721 - 4,408,613
singlet/doubletdoublet
Overlap geneLOC667381, LOC100039965
Upstream geneSamd9l, AI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1
Downstream geneCol1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349J02.bB6Ng01-349J02.g
ACCGA130526GA130527
length1,166927
definitionB6Ng01-349J02.b B6Ng01-349J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,286,721 - 4,287,893)(4,407,690 - 4,408,613)
sequence
gaattctgtaagcctttcataaacaaatgaatgtaataaaattttagtat
aatgataatggggctaaggagaggagcagacacaaaagcctgagtttgga
tttcggaacccatgttagaaagccaagcagagtagctcatgcctgtaact
ccaggcttgagtaaggtaggcagaaagacccaagaggctctctggccaat
cactcgagagtctagactatttaatggcctctgggtttgatgagagatcc
tgttcccaaaataatggcagaaggcaatccaggaaagaaacaatatactg
atttggggcctccaaagccacatacatgcatattcaacaataacaacaac
aataataatgatgcagcccaagtgagttggcattgaaatgatgggccagt
ataagctaaagaagaaaaggtgtctgagaagacagcagccgggctcagaa
ctgtgctgaaattgattctctttggcattggagtttagctaccaattaat
aacggatgaagaaaatgtcccccactactataaaattgcacaatgacttt
tggaagaagtttagcaatacatgtcttcattaaaatattatatatgtata
tatattatatatacagatatataattttaagtttcatgcataagtactgc
ttaccttttaaaccatagtttataatttttgtgcttgaacctaagggatc
atagatacaaaaatgtgtgtcctaagatttgcaagagcagagagaaaaaa
attagacaagtttagaataattaattatgaaaatatctatgataaaatgt
caaaactagctgggcagtggtgggcgcacaccttttaatcccagcacttg
ggaggcagagctaggggtatttctgagttagaggccagcctgggtctaca
gagtgagttccaggacagccaaggctatacagagaaaccctgtctcgaaa
tcaaacaaaacaaacaacaaacaaacaacaaattctatttgatataaaaa
gcaccattagaagataatagcacttaggaaaatactgttgatataattta
aaatgatttttaaattgtattaatatagtcaatccaaaacattatattaa
ttactaagctatcagaagagaaaggcctttggatactaggttcatctatg
gacagttatattcatg
gaattccaggaccgcagggctatacagagaaaccctgtttccaaagaacc
aaaaaagaaagaaaaaaaaaaaaaaaggcgtatgctcggaacaaaactaa
gattctaagacggaaactaagattctaagaaggatatgaaatctcagctc
atgatttttttttccccagatctgaggatcaaacccaaggccttgtgctt
gctaggcaagtgctgtacactgagttaaatcctcaaccccagctcatgat
ttataataggctctcttattcagcgtgcatgaatggcatctatgaaaccc
tacattcaagccccagaagcctgcgaggaaacacagaaaaagagaggtct
gtgttaataaaaatattaaaaccatcttttgtaatattattcttcatatt
tttattgttctctgcttttatgcaaagagagagatgatttaactttaggc
cattcagtttgtaagaatttgacagtaaataactttcgcattgtgatgga
ggagaggaagggatacgagaaaacttttaaaatatttaaaacttttaaca
ctattatttgcaaccattctgctgtagcttaattttgggtagtctcttca
cttcagacattacagtacatccaagtaaaagtaacctttggcttctacag
gagaagggtgtgggctccccgggtgagcagtttttcctcttgggcctcct
gtggaatggtttgtggagactgcaaaaagcagaggcaggcttttggctcc
gccctcccctcccccactccttccaactcatcacatttcttatatatcca
gcaaaatatcttgtttttggttagaatgcattggaaaggaaggcaaagga
aacctttttttccttccccctttcgttaaatgtccaagtttgtaggagag
gtcctgtcaaagaactaaccaaatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_4286721_4287893
seq2: B6Ng01-349J02.b_50_1215

seq1  GAATTCTGTAAGCCTTTCATAAACAAATGAATGTAATAAAATTTTAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAAGCCTTTCATAAACAAATGAATGTAATAAAATTTTAGTAT  50

seq1  AATGATAATGGGGCTAAGGAGAGGAGCAGACACAAAAGCCTGAGTTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAATGGGGCTAAGGAGAGGAGCAGACACAAAAGCCTGAGTTTGGA  100

seq1  TTTCGGAACCCATGTTAGAAAGCCAAGCAGAGTAGCTCATGCCTGTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGAACCCATGTTAGAAAGCCAAGCAGAGTAGCTCATGCCTGTAACT  150

seq1  CCAGGCTTGAGTAAGGTAGGCAGAAAGACCCAAGAGGCTCTCTGGCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTGAGTAAGGTAGGCAGAAAGACCCAAGAGGCTCTCTGGCCAAT  200

seq1  CACTCGAGAGTCTAGACTATTTAATGGCCTCTGGGTTTGATGAGAGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGAGAGTCTAGACTATTTAATGGCCTCTGGGTTTGATGAGAGATCC  250

seq1  TGTTCCCAAAATAATGGCAGAAGGCAATCCAGGAAAGAAACAATATACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAAAATAATGGCAGAAGGCAATCCAGGAAAGAAACAATATACTG  300

seq1  ATTTGGGGCCTCCAAAGCCACATACATGCATATTCAACAATAACAACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGCCTCCAAAGCCACATACATGCATATTCAACAATAACAACAAC  350

seq1  AATAATAATGATGCAGCCCAAGTGAGTTGGCATTGAAATGATGGGCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATGATGCAGCCCAAGTGAGTTGGCATTGAAATGATGGGCCAGT  400

seq1  ATAAGCTAAAGAAGAAAAGGTGTCTGAGAAGACAGCAGCCGGGCTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTAAAGAAGAAAAGGTGTCTGAGAAGACAGCAGCCGGGCTCAGAA  450

seq1  CTGTGCTGAAATTGATTCTCTTTGGCATTGGAGTTTAGCTACCAATTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGAAATTGATTCTCTTTGGCATTGGAGTTTAGCTACCAATTAAT  500

seq1  AACGGATGAAGAAAATGTCCCCCACTACTATAAAATTGCACAATGACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGATGAAGAAAATGTCCCCCACTACTATAAAATTGCACAATGACTTT  550

seq1  TGGAAGAAGTTTAGCAATACATGTCTTCATTAAAATATTATATATGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAGTTTAGCAATACATGTCTTCATTAAAATATTATATATGTATA  600

seq1  TATATTATATATACAGATATATAATTTTAAGTTTCATGCATAAGTACTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATATATACAGATATATAATTTTAAGTTTCATGCATAAGTACTGC  650

seq1  TTACCTTTTAAACCATAGTTTATAATTTTTGTGCTTGAACCTAAGGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTTTAAACCATAGTTTATAATTTTTGTGCTTGAACCTAAGGGATC  700

seq1  ATAGATACAAAAATGTGTGTCCTAAGATTTGCAAGAGCAGAGAGAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATACAAAAATGTGTGTCCTAAGATTTGCAAGAGCAGAGAGAAAAAA  750

seq1  ATTAGACAAGTTTAGAATAATTAATTATGAAAATATCTATGATAAAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACAAGTTTAGAATAATTAATTATGAAAATATCTATGATAAAATGT  800

seq1  CAAAACTAGCTGGGCAGTGGT-GGCGCACACC-TTTAATCCCAGCACTTG  848
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  CAAAACTAGCTGGGCAGTGGTGGGCGCACACCTTTTAATCCCAGCACTTG  850

seq1  GGAGGCAGAGCTAGGGGTATTTCTGAGTTAGAGGCCAGCCT-GGTCTACA  897
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGAGGCAGAGCTAGGGGTATTTCTGAGTTAGAGGCCAGCCTGGGTCTACA  900

seq1  GAGTGAGTTCCAGGACAGCCAAGGCTATACAGAGAAACCCTGTCTCGAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGTGAGTTCCAGGACAGCCAAGGCTATACAGAGAAACCCTGTCTCG-AA  949

seq1  ATCAAAACAAAACAAACAAACAAACAAACAAACAAAATCTA-TTGATATA  996
      ||| ||||||||||||| ||||||||||| |||||| |||| ||||||||
seq2  ATC-AAACAAAACAAAC-AACAAACAAAC-AACAAATTCTATTTGATATA  996

seq1  AAAAGCACCATTAGAAGAATAAATAGCAACTTAGGAAAATACTGTTTGAT  1046
      ||||||||||||||||||   |||||| |||||||||||||||| |||||
seq2  AAAAGCACCATTAGAAGA--TAATAGC-ACTTAGGAAAATACTG-TTGAT  1042

seq1  ATTAAATTTTAAAATGATTTTTAAATTGTAATAATATTAGTCAATCAAAA  1096
      ||   | ||||||||||||||||||||||| ||||| ||||||||| |||
seq2  AT---AATTTAAAATGATTTTTAAATTGTATTAATA-TAGTCAATCCAAA  1088

seq1  ACAATATATAAATACATAAGCTATCAGAAGAGAAA-GCCTTT-GATACTA  1144
      ||| ||||| |||   ||||||||||||||||||| |||||| |||||||
seq2  ACATTATATTAATTACTAAGCTATCAGAAGAGAAAGGCCTTTGGATACTA  1138

seq1  AGTGTTCATCTATGGACAGTTATA-TCATG  1173
         ||||||||||||||||||||| |||||
seq2  --GGTTCATCTATGGACAGTTATATTCATG  1166

seq1: chr6_4407690_4408613
seq2: B6Ng01-349J02.g_70_996 (reverse)

seq1  TCCATTTGGTTAGTTGCTTTGACA-GACCTCTCCTACAAACTTGGAACAT  49
      | ||||||||||||| |||||||| |||||||||||||||||||| ||||
seq2  TTCATTTGGTTAGTT-CTTTGACAGGACCTCTCCTACAAACTTGG-ACAT  48

seq1  TTAACGAAAGGGGGAAGGAAAAAAAGGTTTCCTTTGCCTTCC-TTCCACT  98
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  TTAACGAAAGGGGGAAGGAAAAAAAGGTTTCCTTTGCCTTCCTTTCCAAT  98

seq1  GCATTCTAACCAAAAGC-AGAT-TTTTGCTGGATTATATAAG-AATGTGA  145
      ||||||||||||||| | |||| |||||||||| |||||||| |||||||
seq2  GCATTCTAACCAAAAACAAGATATTTTGCTGGA-TATATAAGAAATGTGA  147

seq1  TGAGTTGGAAGGAGTGGGGGAGGGGAGGGCGGAGCCAAAAGCCTGCCTCT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGGAAGGAGTGGGGGAGGGGAGGGCGGAGCCAAAAGCCTGCCTCT  197

seq1  GCTTTTTGCAGTCTCCACAAACCATTCCACAGGAGGCCC-AGAGGAAAAA  244
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCTTTTTGCAGTCTCCACAAACCATTCCACAGGAGGCCCAAGAGGAAAAA  247

seq1  CTGCTCACCCGGGGAGCCCACACCCTTCTCCTGTAGAAGCCAAAGGTTAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCACCCGGGGAGCCCACACCCTTCTCCTGTAGAAGCCAAAGGTTAC  297

seq1  TTTTACTTGGATGTACTGTAATGTCTGAAGTGAAGAGACTACCCAAAATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTGGATGTACTGTAATGTCTGAAGTGAAGAGACTACCCAAAATT  347

seq1  AAGCTACAGCAGAATGGTTGCAAATAATAGTGTTAAAAGTTTTAAATATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACAGCAGAATGGTTGCAAATAATAGTGTTAAAAGTTTTAAATATT  397

seq1  TTAAAAGTTTTCTCGTATCCCTTCCTCTCCTCCATCACAATGCGAAAGTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTTTCTCGTATCCCTTCCTCTCCTCCATCACAATGCGAAAGTT  447

seq1  ATTTACTGTCAAATTCTTACAAACTGAATGGCCTAAAGTTAAATCATCTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGTCAAATTCTTACAAACTGAATGGCCTAAAGTTAAATCATCTC  497

seq1  TCTCTTTGCATAAAAGCAGAGAACAATAAAAATATGAAGAATAATATTAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGCATAAAAGCAGAGAACAATAAAAATATGAAGAATAATATTAC  547

seq1  AAAAGATGGTTTTAATATTTTTATTAACACAGACCTCTCTTTTTCTGTGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGGTTTTAATATTTTTATTAACACAGACCTCTCTTTTTCTGTGT  597

seq1  TTCCTCGCAGGCTTCTGGGGCTTGAATGTAGGGTTTCATAGATGCCATTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCGCAGGCTTCTGGGGCTTGAATGTAGGGTTTCATAGATGCCATTC  647

seq1  ATGCACGCTGAATAAGAGAGCCTATTATAAATCATGAGCTGGGGTTGAGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACGCTGAATAAGAGAGCCTATTATAAATCATGAGCTGGGGTTGAGG  697

seq1  ATTTAACTCAGTGTACAGCACTTGCCTAGCAAGCACAAGGCCTTGGGTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTCAGTGTACAGCACTTGCCTAGCAAGCACAAGGCCTTGGGTTT  747

seq1  GATCCTCAGATCTGGGGAAAAAAAAATCATGAGCTGAGATTTCATATCCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCAGATCTGGGGAAAAAAAAATCATGAGCTGAGATTTCATATCCT  797

seq1  TCTTAGAATCTTAGTTTCCGTCTTAGAATCTTAGTTTTGTTCCGAGCATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAATCTTAGTTTCCGTCTTAGAATCTTAGTTTTGTTCCGAGCATA  847

seq1  CGCCTTTTTTTTTTTTTTTCTTTCTTTTTTGGTTCTTTGGAAACAGGGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTTTTTTTTTTTTTCTTTCTTTTTTGGTTCTTTGGAAACAGGGTT  897

seq1  TCTCTGTATAGCCCTGCGGTCCTGGAATTC  924
      ||||||||||||||||||||||||||||||
seq2  TCTCTGTATAGCCCTGCGGTCCTGGAATTC  927