BAC Information

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BAC

Clone NameB6Ng01-349M02
Chromosome6 (Build37)
Map Location 66,344,089 - 66,345,210
singlet/doubletsinglet
Overlap genenone
Upstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349M02.bB6Ng01-349M02.g
ACCGA130651GA130652
length1,1231,102
definitionB6Ng01-349M02.b B6Ng01-349M02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagcctgggatacactgtgataactgctctgaagtcacaaaaaa
ataagaaaatgaattggaaacacaatagcatacttgttaatgaaatgcta
gatattagaactaataagctctagattccaataggctttgcaaaacaaag
tcttagaagtcttgctcactgtatcctatctcccttcccttgaagcccct
tcctatggaccatcactcatttgctgatctctataagaattccaaatgag
acacacatatctaaaaattcaatgctaacatccacagatgagaaaaaaaa
ttatgtgataacattctgggtctgaattattttattttttgaactgctga
atattatcccacgtgtaaatgtatcacatagccactatcacctgataaac
aactacccagtttttatttcctgactgtgtgactagaatgcacatggatg
cggaggtattcctgtcctttacactataggcctttgtgtatatgcccaag
agactggtaaagctggatcatgtgctagatctattccacactgatttcca
taatggctgcactagattatactctctccaacagtatataaatgttctac
tttcccacatcaacatctatgtgtttgtttttgttttgttttttttcata
gccattatgcctggggtcagataaactctcaaagaagttctaattttcat
tttcttaataatgctgaatgttttaaaaaatgttttttcagtcatttcta
tttcatgtttttacatttaatttgtattttacctctgtttaattcaataa
ttttaattgggttcattttttaatgtttcattctaattttttgtttattc
tagttactaactctctgtaagatatttagctagtaaaactttttttccat
tcaagaagcagtgagggttgcatgcaagataactaaactgtaactgtagt
ttctagcattcccttctctatatagttctaggtcatatagaccacaacat
tcagtttgcatgagatttgcagctggagcaaagtgcagtagtttaaacag
ccagagattcactagaggacagaaggctattgccattcacaccgcactga
ctcattcttctgaatggggcagt
gaattctctccctttgtgatttctctattgtttctactttcatttttata
tcctggatggttttgttcaattcttcacctgtttgtgttttcctgtaatt
ctttaagggatttttctgtttcctctttcagggcttctgtttgcctgtgt
tctactgtagttctttaagggagttatttatgtcctccttaatgtcctct
ataatcatcatgagatgtcattttaaatccaaatcttgcttttccagtgt
gttgggctatacaggactttctgtggtgggagaagtgggtactgatgatg
ccaagtagccttgatttctgctggtaatgttcttgtgcttgccttttaac
atctggttatctctggtgttagttggtctgctattagttggttagctgga
gcttgtccctcctgtgggcctgtaagcctgtgtcagcactgctgggagac
caggtctctcctggcaggacctgtgtacagagggctgtagaacagcctta
gcttctgtgtgcagatggcgaccagtctattaatatgggagaagtaacag
ctccctcctccctcagcaatcccacaaaaattcaagttcaagacctacta
ggaacacatataatctcatctcccagtagcccttcatcatgtgttttcaa
atattttactttatgtttttaatattatttacctttatttcttatacatt
gctgctttatctgagtaaagtatgtaagtctgcgtgaggatgttatatcc
cctggaactggagataatccaatcatgagctgccatgggttctgggaatt
gaacctgtgtcctgttgaagagcaaccagggctcttaacttctgagccct
tttctccagcccctttattttatttttttttaatagtttcaagatcatca
gtctagctcctgctattttcaatacacacttggaagtagagatcccagtg
atttcccagttagttgctctctcctcctccccacctttagattcttttgt
ggtaatcttcacctgatttgtatgttaccattcttttttcttgtaatgcc
tggcctaaggtttggctatgtgctttttggaaaaaacttgccattaaagt
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_66344089_66345210
seq2: B6Ng01-349M02.b_47_1169

seq1  GAATTCAAGCCTGGGATACACTGTGATAACTGCTCTGAAGTCACAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCTGGGATACACTGTGATAACTGCTCTGAAGTCACAAAAAA  50

seq1  ATAAGAAAATGAATTGGAAACACAATAGCATACTTGTTAATGAAATGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAATGAATTGGAAACACAATAGCATACTTGTTAATGAAATGCTA  100

seq1  GATATTAGAACTAATAAGCTCTAGATTCCAATAGGCTTTGCAAAACAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAGAACTAATAAGCTCTAGATTCCAATAGGCTTTGCAAAACAAAG  150

seq1  TCTTAGAAGTCTTGCTCACTGTATCCTATCTCCCTTCCCTTGAAGCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAAGTCTTGCTCACTGTATCCTATCTCCCTTCCCTTGAAGCCCCT  200

seq1  TCCTATGGACCATCACTCATTTGCTGATCTCTATAAGAATTCCAAATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGGACCATCACTCATTTGCTGATCTCTATAAGAATTCCAAATGAG  250

seq1  ACACACATATCTAAAAATTCAATGCTAACATCCACAGATGAGAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATATCTAAAAATTCAATGCTAACATCCACAGATGAGAAAAAAAA  300

seq1  TTATGTGATAACATTCTGGGTCTGAATTATTTTATTTTTTGAACTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGATAACATTCTGGGTCTGAATTATTTTATTTTTTGAACTGCTGA  350

seq1  ATATTATCCCACGTGTAAATGTATCACATAGCCACTATCACCTGATAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCCCACGTGTAAATGTATCACATAGCCACTATCACCTGATAAAC  400

seq1  AACTACCCAGTTTTTATTTCCTGACTGTGTGACTAGAATGCACATGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCCAGTTTTTATTTCCTGACTGTGTGACTAGAATGCACATGGATG  450

seq1  CGGAGGTATTCCTGTCCTTTACACTATAGGCCTTTGTGTATATGCCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGTATTCCTGTCCTTTACACTATAGGCCTTTGTGTATATGCCCAAG  500

seq1  AGACTGGTAAAGCTGGATCATGTGCTAGATCTATTCCACACTGATTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGTAAAGCTGGATCATGTGCTAGATCTATTCCACACTGATTTCCA  550

seq1  TAATGGCTGCACTAGATTATACTCTCTCCAACAGTATATAAATGTTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCTGCACTAGATTATACTCTCTCCAACAGTATATAAATGTTCTAC  600

seq1  TTTCCCACATCAACATCTATGTGTTTGTTTTTGTTTTGTTTTTTTTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACATCAACATCTATGTGTTTGTTTTTGTTTTGTTTTTTTTCATA  650

seq1  GCCATTATGCCTGGGGTCAGATAAACTCTCAAAGAAGTTCTAATTTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTATGCCTGGGGTCAGATAAACTCTCAAAGAAGTTCTAATTTTCAT  700

seq1  TTTCTTAATAATGCTGAATGTTTTAAAAAATGTTTTTTCAGTCATTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAATAATGCTGAATGTTTTAAAAAATGTTTTTTCAGTCATTTCTA  750

seq1  TTTCATGTTTTTACATTTAATTTGTATTTTACCTCTGTTTAATTCAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTTTTTACATTTAATTTGTATTTTACCTCTGTTTAATTCAATAA  800

seq1  TTTTAATTGGGTTCATTTTTTAATGTTTCATTCTAATTTTTTGTTTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGGGTTCATTTTTTAATGTTTCATTCTAATTTTTTGTTTATTC  850

seq1  TAGTTACTAACTCTCTGTAAGATATTTAGCTAGTAAAACTTTTTTTCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTAACTCTCTGTAAGATATTTAGCTAGTAAAACTTTTTTTCCAT  900

seq1  TCAAGAAGCAGTGA-GGTTGCATGCAAGATAACTAAACTGTAACTGTAGT  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGCAGTGAGGGTTGCATGCAAGATAACTAAACTGTAACTGTAGT  950

seq1  TTCTAGCATTCCCTTCTCTATATAGTTCTAGGTCAATATAGACCACAACA  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCTAGCATTCCCTTCTCTATATAGTTCTAGGTC-ATATAGACCACAACA  999

seq1  TTCAGTTTGCATGAGATTTGCAGCTGGAGGCAAAGTGCAGGTAGTTTAAA  1049
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  TTCAGTTTGCATGAGATTTGCAGCTGGA-GCAAAGTGCA-GTAGTTTAAA  1047

seq1  CAGCCAGGAGATTCACTAGAGGACAGAAGGCTATTGCCATTCACA-CGCA  1098
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGCCA-GAGATTCACTAGAGGACAGAAGGCTATTGCCATTCACACCGCA  1096

seq1  CTGACTCAT--CTCTG-ATGGGGCAGT  1122
      |||||||||   |||| ||||||||||
seq2  CTGACTCATTCTTCTGAATGGGGCAGT  1123