BAC Information

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BAC

Clone NameB6Ng01-350A23
Chromosome6 (Build37)
Map Location 37,590,906 - 37,678,448
singlet/doubletdoublet
Overlap geneYbx1-ps2
Upstream genePtn, LOC100039514, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046
Downstream geneLOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350A23.bB6Ng01-350A23.g
ACCGA130854GA130855
length1,0221,156
definitionB6Ng01-350A23.b B6Ng01-350A23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,590,906 - 37,591,651)(37,677,267 - 37,678,448)
sequence
gaattcacctactgaatttctgcccacagaatagattcctttttatttta
gttaatttttttttttttaaatatggggagcggtattgttacataaggag
gctagagatcagaagaaagtaaggcctacctgaaagtatagatgtagtcc
tccctcagaaaataacgtatgctagatatggggtcctccagggagagttc
caatgaatggtccaagcattaaccgtatatttcctttgggttacttttaa
gcagtcattaataatctcccaaccaaaaaaagcccagggccagatgggtt
tagtgcagagttctatcagaccttcaaagaagacctaattccagttctac
tcaaactattccacaaaatagaaacaaaaggtactctacccaattcattc
tatgaagccacaattactctgatacctaaaccacacaaagacccaacaaa
gatagagaacttcagaccaatttcccttatgaatattgatgcaaaaatac
tcaataaaattctcactaactgaatccaagaacacatcaaaacaatcatc
catcatgatcaagtaggcttcattccagggatgaagggatggtttaatat
acagaaatccgtcaacgtaatccactatataaacaaactcaaagacaaaa
actgcatgatcatctcgttagatgctgagaaagcatttgacaaaatccaa
cacccctttatgataaacataataaacataataaaagcaatctacagcaa
accagtagccgacatcaaactaaatggagagaaacttgaagcaaccccac
taaaatcagggactagacaaggctgcccactttctccctacctattcaat
atagttctcgaagtcctagccagagcaattagacaacaaaaggaggtcaa
ggggataaaattagaaaggaagaagtcaaaatatcactatttgcagatga
tatgatagtatatataagtgaccttaaaaattccaccagagaactcctaa
acctgataacactttcagtgaa
gaattcttttcttttccccctttactctgattctgtcatcaggtagcttt
gctaaatgaacttgagcatcgtaagtgaaattcagtgtgtgtttactaaa
gaagtgtacagtagcaagctttaacagagttgtaactcccttctgactag
ggtgtgtttcactcatcgtgagagtgatgagttccatggttctggaactc
agttctcatggttcctgctcatgggctcattccactgcaccttgacacct
ctcagaatggagcatcaagacaaaccacttgggatttaccacaaccacag
tgtatttaaaggatgcctctgtcagagagaagaggtcggggatcaggagg
agtagaaggagggaaaactacagttggggtcattgaatgagagaataata
atgattacaatactactactaataataataattacaataataaatgcctc
tgcagctggcctcctggatgtctctatgctgctggcctcctgtgagccca
gactgagtttcagcatcagcatcaacattgtgagtactgccatcagggag
agtggggctgggtctcacatttgtaaacagagcactaaactcaagtggga
gagcatctacaggtcccaggccagcctgggatgctaagtccgagaatctg
tctcaagaaacccaaaaatccaccaatccaaaacagttggggaggtaggt
gggacacatatttgtaatcccagcacttaggaagatgagacaggaggatc
accatgaattaaagtacagcctgggctaaagagtgaaagttatctcaaga
taaaaccaaacaaaaggaaaacccaggcaaaccaaaggaagcaggttggt
gaggagaggctgaggctacagctcagcagaagagcactagcctaccatgg
acaagcctcctcatttgatttctgccactagaaaaagggtttgtgtgtat
gtgtagcaagaatatattcatatgacattcatagcacaaaaacaatgtat
agataataaatagcatatatactatagctatatagctatagcatttttga
caacagtataaaaacatacatggaataaaggtcccgtcacagtggtgctg
agactaatcgaagctaagaagcacagacctatcacaactcagaatgaaag
tagatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_37590906_37591651
seq2: B6Ng01-350A23.b_47_792

seq1  GAATTCACCTACTGAATTTCTGCCCACAGAATAGATTCCTTTTTATTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTACTGAATTTCTGCCCACAGAATAGATTCCTTTTTATTTTA  50

seq1  GTTAATTTTTTTTTTTTTAAATATGGGGAGCGGTATTGTTACATAAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTTTTTTTTTTTAAATATGGGGAGCGGTATTGTTACATAAGGAG  100

seq1  GCTAGAGATCAGAAGAAAGTAAGGCCTACCTGAAAGTATAGATGTAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGATCAGAAGAAAGTAAGGCCTACCTGAAAGTATAGATGTAGTCC  150

seq1  TCCCTCAGAAAATAACGTATGCTAGATATGGGGTCCTCCAGGGAGAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGAAAATAACGTATGCTAGATATGGGGTCCTCCAGGGAGAGTTC  200

seq1  CAATGAATGGTCCAAGCATTAACCGTATATTTCCTTTGGGTTACTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAATGGTCCAAGCATTAACCGTATATTTCCTTTGGGTTACTTTTAA  250

seq1  GCAGTCATTAATAATCTCCCAACCAAAAAAAGCCCAGGGCCAGATGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCATTAATAATCTCCCAACCAAAAAAAGCCCAGGGCCAGATGGGTT  300

seq1  TAGTGCAGAGTTCTATCAGACCTTCAAAGAAGACCTAATTCCAGTTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAGAGTTCTATCAGACCTTCAAAGAAGACCTAATTCCAGTTCTAC  350

seq1  TCAAACTATTCCACAAAATAGAAACAAAAGGTACTCTACCCAATTCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTATTCCACAAAATAGAAACAAAAGGTACTCTACCCAATTCATTC  400

seq1  TATGAAGCCACAATTACTCTGATACCTAAACCACACAAAGACCCAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCCACAATTACTCTGATACCTAAACCACACAAAGACCCAACAAA  450

seq1  GATAGAGAACTTCAGACCAATTTCCCTTATGAATATTGATGCAAAAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGAACTTCAGACCAATTTCCCTTATGAATATTGATGCAAAAATAC  500

seq1  TCAATAAAATTCTCACTAACTGAATCCAAGAACACATCAAAACAATCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAAATTCTCACTAACTGAATCCAAGAACACATCAAAACAATCATC  550

seq1  CATCATGATCAAGTAGGCTTCATTCCAGGGATGAAGGGATGGTTTAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGATCAAGTAGGCTTCATTCCAGGGATGAAGGGATGGTTTAATAT  600

seq1  ACAGAAATCCGTCAACGTAATCCACTATATAAACAAACTCAAAGACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATCCGTCAACGTAATCCACTATATAAACAAACTCAAAGACAAAA  650

seq1  ACTGCATGATCATCTCGTTAGATGCTGAGAAAGCATTTGACAAAATCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATGATCATCTCGTTAGATGCTGAGAAAGCATTTGACAAAATCCAA  700

seq1  CACCCCTTTATGATAAACATAATAAACATAATAAAAGCAATCTACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTTTATGATAAACATAATAAACATAATAAAAGCAATCTACA  746

seq1: chr6_37677267_37678448
seq2: B6Ng01-350A23.g_67_1222 (reverse)

seq1  GATCTACTTTCATTCTTTGGTGTGTGAATAGTGTTTTGTTGGTTTTTTTT  50
      ||||||||||||||||  | ||||   ||||   | ||      || || 
seq2  GATCTACTTTCATTCTGAGTTGTG---ATAGGTCTGTG-----CTTCTTA  42

seq1  GCTTTTGTTTTTAGTTTCTCAGCACCACTGTTGAAGGGACTTTTATTCCC  100
      ||||      ||||  |||||||||||||| ||| ||||| |||||||| 
seq2  GCTT---CGATTAG--TCTCAGCACCACTG-TGACGGGACCTTTATTCC-  85

seq1  CAATGTATGTTTTTAATACTGTTGTCAAAAATTGGCTATAGCTATATAGG  150
        |||||||||||| |||||||||||||||||  |||||||||||||| |
seq2  --ATGTATGTTTTT-ATACTGTTGTCAAAAAT--GCTATAGCTATATA-G  129

seq1  CTATAGTTATATATTGCTATTTTAATTATTCTATACATTTGTTTTGTGCT  200
      |||||| |||||| ||||||||  |||| ||||||||||  |||||||||
seq2  CTATAG-TATATA-TGCTATTT--ATTA-TCTATACATTGTTTTTGTGCT  174

seq1  ATGAATGTCATATGAATATATCTTTGCTACACATACACACAAACCCTTTT  250
      |||||||||||||||||||||  ||||||||||||||||||||||| |||
seq2  ATGAATGTCATATGAATATATTCTTGCTACACATACACACAAACCC-TTT  223

seq1  TTCTAGTGGCAGAAATCAAATGAGGAGGCTTGTCCATGGTAGGCTAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGGCAGAAATCAAATGAGGAGGCTTGTCCATGGTAGGCTAGTGC  273

seq1  TCTTCTGCTGAGCTGTAGCCTCAGCCTCTCCTCACCAACCTGCTTCC-TT  349
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTTCTGCTGAGCTGTAGCCTCAGCCTCTCCTCACCAACCTGCTTCCTTT  323

seq1  GGTTTGCCTGGGTTTTCCTTTTGTTTGGTTTTATCTTGAGATAACTTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCCTGGGTTTTCCTTTTGTTTGGTTTTATCTTGAGATAACTTTCA  373

seq1  CTCTTTAGCCCAGGCTGTACTTTAATTCATGGTGATCCTCCTGTCTCATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAGCCCAGGCTGTACTTTAATTCATGGTGATCCTCCTGTCTCATC  423

seq1  TTCCTAAGTGCTGGGATTACAAATATGTGTCCCACCTACCTCCCCAACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAGTGCTGGGATTACAAATATGTGTCCCACCTACCTCCCCAACTG  473

seq1  TTTTGGATTGGTGGATTTTTGGGTTTCTTGAGACAGATTCTCGGACTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATTGGTGGATTTTTGGGTTTCTTGAGACAGATTCTCGGACTTAG  523

seq1  CATCCCAGGCTGGCCTGGGACCTGTAGATGCTCTCCCACTTGAGTTTAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAGGCTGGCCTGGGACCTGTAGATGCTCTCCCACTTGAGTTTAGT  573

seq1  GCTCTGTTTACAAATGTGAGACCCAGCCCCACTCTCCCTGATGGCAGTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTTACAAATGTGAGACCCAGCCCCACTCTCCCTGATGGCAGTAC  623

seq1  TCACAATGTTGATGCTGATGCTGAAACTCAGTCTGGGCTCACAGGAGGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGTTGATGCTGATGCTGAAACTCAGTCTGGGCTCACAGGAGGCC  673

seq1  AGCAGCATAGAGACATCCAGGAGGCCAGCTGCAGAGGCATTTATTATTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCATAGAGACATCCAGGAGGCCAGCTGCAGAGGCATTTATTATTGT  723

seq1  AATTATTATTATTAGTAGTAGTATTGTAATCATTATTATTCTCTCATTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTATTATTAGTAGTAGTATTGTAATCATTATTATTCTCTCATTCA  773

seq1  ATGACCCCAACTGTAGTTTTCCCTCCTTCTACTCCTCCTGATCCCCGACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCCAACTGTAGTTTTCCCTCCTTCTACTCCTCCTGATCCCCGACC  823

seq1  TCTTCTCTCTGACAGAGGCATCCTTTAAATACACTGTGGTTGTGGTAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCTGACAGAGGCATCCTTTAAATACACTGTGGTTGTGGTAAAT  873

seq1  CCCAAGTGGTTTGTCTTGATGCTCCATTCTGAGAGGTGTCAAGGTGCAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGGTTTGTCTTGATGCTCCATTCTGAGAGGTGTCAAGGTGCAGT  923

seq1  GGAATGAGCCCATGAGCAGGAACCATGAGAACTGAGTTCCAGAACCATGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAGCCCATGAGCAGGAACCATGAGAACTGAGTTCCAGAACCATGG  973

seq1  AACTCATCACTCTCACGATGAGTGAAACACACCCTAGTCAGAAGGGAGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATCACTCTCACGATGAGTGAAACACACCCTAGTCAGAAGGGAGTT  1023

seq1  ACAACTCTGTTAAAGCTTGCTACTGTACACTTCTTTAGTAAACACACACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTGTTAAAGCTTGCTACTGTACACTTCTTTAGTAAACACACACT  1073

seq1  GAATTTCACTTACGATGCTCAAGTTCATTTAGCAAAGCTACCTGATGACA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCACTTACGATGCTCAAGTTCATTTAGCAAAGCTACCTGATGACA  1123

seq1  GAATCAGAGTAAAGGGGGAAAAGAAAAGAATTC  1182
      |||||||||||||||||||||||||||||||||
seq2  GAATCAGAGTAAAGGGGGAAAAGAAAAGAATTC  1156