BAC Information

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BAC

Clone NameB6Ng01-350G10
Chromosome6 (Build37)13 (Build37)
Map Location 71,935,608 - 71,935,68431,738,337 - 31,739,423
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4
Downstream geneLOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350G10.bB6Ng01-350G10.g
ACCGA131082GA131083
length4711,105
definitionB6Ng01-350G10.b B6Ng01-350G10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,935,608 - 71,935,684)(31,738,337 - 31,739,423)
sequence
acacacaaacacaacactctctctctctctctctctctctctctctctct
ctctctctctctctctctctctcacgtaagtgagtgttttgcattctggt
agagtatagagtggggtgtgtgggtcctctccccccagatgtccccccca
ctatggataaaagtggaacagaaggggtacgagagtgtggaggggttgga
aaagatacttggatgtagggagaggataagaggcgtgttcgaaaacacta
actagagagaggttctaagagaaacaaaccaagaataaaaatatgaatga
gtggggggggataagaggaggatatataactatctcgatatgttcctaat
tctttagaaccaaatctttttagtgttatgacgtttttacgaacgcacta
cctgtttttctcgcacgaacatgcgtgcgtgcgcgcgcgtgacgcatacg
gacacacacacacacacagca
gaattcaggcctccttgtctgagtgcccagcatccaaggccctgggccag
ttggctgcctggaagtggagacagaaatgtgctaacacaatctgacccat
gtttaccttaccacagacccttcatgggcaggagctgactgggctgtggg
aagggaacagcaagaagaacccagggccactagcacaacggcctctccat
gggtgtgatttcacacaggtttctcttaaccttcagcagagaggcatttt
cgtagaaagaaaggagagagtagaggctgagaaaaatgaaaaggcttacc
tagccatagacaatcaaagagacacaaaaagtcagagcttacatatccat
ggtttagatttccaaagtgaatctattaccttcagggatccagtaaggaa
caaggtttccctggtttctaaattccgtttgaaatctaatgagccattct
aagcaaagtcaaaagatttcagaaagggctcaggagatggcttagtacgt
aaagtattcttatcttatacccacaatgacaaagttctatccccagacct
tgtgttcaaaagacaaatcaaacaggcatggcagtgtgtgcttgaaatcc
cagcctgggggagacagagatggatccctgggatgtgctgggtacccagg
cccaagtatagcctacttgtgaagttccagtgtaatgagagacacttttt
taaaatgccacatggttgtctacacacacacacacacacacacacacaca
cacacacacacacacacaccaccccctcagaaaaccaagtggtccccagt
caggaacaatgttgtatgcacagagtatttgtcagggttgagaaaggttt
tggttataacaaaaggatattaaagtccagggaggtctccagaacatcaa
gtggcttttccacaaacaaagggtcacttgtccccaagtactttttgata
aaaagctgaccttttttagtcctattcagaataaaacaagccaaaccttt
aataactgctttttaagagttgttaatatatgtggccgcaccgcctttat
tcccaagcacttgggaagccagaagggaggcgatttcttgagttgagccc
agcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_71935608_71935684
seq2: B6Ng01-350G10.b_72_522 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TGCTGTGTGTGTGTGTGTGTCCGTATGCGTCACGCGCGCGCACGCACGCA  50

seq1  --------------------------------------------------  0
                                                        
seq2  TGTTCGTGCGAGAAAAACAGGTAGTGCGTTCGTAAAAACGTCATAACACT  100

seq1  --------------------------------------------------  0
                                                        
seq2  AAAAAGATTTGGTTCTAAAGAATTAGGAACATATCGAGATAGTTATATAT  150

seq1  --------------------------------------------------  0
                                                        
seq2  CCTCCTCTTATCCCCCCCCACTCATTCATATTTTTATTCTTGGTTTGTTT  200

seq1  --------------------------------------------------  0
                                                        
seq2  CTCTTAGAACCTCTCTCTAGTTAGTGTTTTCGAACACGCCTCTTATCCTC  250

seq1  --------------------------------------------------  0
                                                        
seq2  TCCCTACATCCAAGTATCTTTTCCAACCCCTCCACACTCTCGTACCCCTT  300

seq1  --------------------------------------------------  0
                                                        
seq2  CTGTTCCACTTTTATCCATAGTGGGGGGGACATCTGGGGGGAGAGGACCC  350

seq1  ---------------TGCTGTGTGTGTGTG---------------TGTGA  20
                     | || |    |  ||                ||||
seq2  ACACACCCCACTCTATACTCTACCAGAATGCAAAACACTCACTTACGTGA  400

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGGGTGGGAGAGAGAGAGAGAGAGAGA  70
      ||||||||||||||||||||||||      ||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGA------GAGAGAGAGAGAGAGAGAGA  444

seq1  GAGAGAG  77
      |||||||
seq2  GAGAGAG  451

seq1: chr13_31738337_31739423
seq2: B6Ng01-350G10.g_68_1172

seq1  GAATTCAGGCCTCCTTGTCTGAGTGCCCAGCATCCAAGGCCCTGGGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCCTCCTTGTCTGAGTGCCCAGCATCCAAGGCCCTGGGCCAG  50

seq1  TTGGCTGCCTGGAAGTGGAGACAGAAATGTGCTAACACAATCTGACCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGCCTGGAAGTGGAGACAGAAATGTGCTAACACAATCTGACCCAT  100

seq1  GTTTACCTTACCACAGACCCTTCATGGGCAGGAGCTGACTGGGCTGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCTTACCACAGACCCTTCATGGGCAGGAGCTGACTGGGCTGTGGG  150

seq1  AAGGGAACAGCAAGAAGAACCCAGGGCCACTAGCACAACGGCCTCTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAACAGCAAGAAGAACCCAGGGCCACTAGCACAACGGCCTCTCCAT  200

seq1  GGGTGTGATTTCACACAGGTTTCTCTTAACCTTCAGCAGAGAGGCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGATTTCACACAGGTTTCTCTTAACCTTCAGCAGAGAGGCATTTT  250

seq1  CGTAGAAAGAAAGGAGAGAGTAGAGGCTGAGAAAAATGAAAAGGCTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGAAAGAAAGGAGAGAGTAGAGGCTGAGAAAAATGAAAAGGCTTACC  300

seq1  TAGCCATAGACAATCAAAGAGACACAAAAAGTCAGAGCTTACATATCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATAGACAATCAAAGAGACACAAAAAGTCAGAGCTTACATATCCAT  350

seq1  GGTTTAGATTTCCAAAGTGAATCTATTACCTTCAGGGATCCAGTAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGATTTCCAAAGTGAATCTATTACCTTCAGGGATCCAGTAAGGAA  400

seq1  CAAGGTTTCCCTGGTTTCTAAATTCCGTTTGAAATCTAATGAGCCATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTCCCTGGTTTCTAAATTCCGTTTGAAATCTAATGAGCCATTCT  450

seq1  AAGCAAAGTCAAAAGATTTCAGAAAGGGCTCAGGAGATGGCTTAGTACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGTCAAAAGATTTCAGAAAGGGCTCAGGAGATGGCTTAGTACGT  500

seq1  AAAGTATTCTTATCTTATACCCACAATGACAAAGTTCTATCCCCAGACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTCTTATCTTATACCCACAATGACAAAGTTCTATCCCCAGACCT  550

seq1  TGTGTTCAAAAGACAAATCAAACAGGCATGGCAGTGTGTGCTTGAAATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCAAAAGACAAATCAAACAGGCATGGCAGTGTGTGCTTGAAATCC  600

seq1  CAGCCTGGGGGAGACAGAGATGGATCCCTGGGATGTGCTGGGTACCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGGGGAGACAGAGATGGATCCCTGGGATGTGCTGGGTACCCAGG  650

seq1  CCCAAGTATAGCCTACTTGTGAAGTTCCAGTGTAATGAGAGACACTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTATAGCCTACTTGTGAAGTTCCAGTGTAATGAGAGACACTTTTT  700

seq1  TAAAATGCCACATGGTTGTCTACACACACACACACACACACACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCCACATGGTTGTCTACACACACACACACACACACACACACACA  750

seq1  CACACACACACACACACACCACCCCCTCAGAAAACCAAGTGGTCCCCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACCACCCCCTCAGAAAACCAAGTGGTCCCCAGT  800

seq1  CAGGAACAATGTTGTATGCACAGAGTATTTGTCAGGGTTGAG-AAGGTTT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGGAACAATGTTGTATGCACAGAGTATTTGTCAGGGTTGAGAAAGGTTT  850

seq1  TGGTTATAAC-AAAGGATATTAAAGTCCAGGGAGGTCCCCAGAACATCAG  898
      |||||||||| |||||||||||||||||||||||||| ||||||||||| 
seq2  TGGTTATAACAAAAGGATATTAAAGTCCAGGGAGGTCTCCAGAACATCAA  900

seq1  GTGGC-TTTCCAC-AACAAAGGGTCACTTGTCCCCAAGTACCTTTTGAT-  945
      ||||| ||||||| ||||||||||||||||||||||||||| ||||||| 
seq2  GTGGCTTTTCCACAAACAAAGGGTCACTTGTCCCCAAGTACTTTTTGATA  950

seq1  AAAAGCTGACC-TTTTTAGT-CTATTCAG-ATAAAACAAG-CAAACCTT-  990
      ||||||||||| |||||||| |||||||| |||||||||| |||||||| 
seq2  AAAAGCTGACCTTTTTTAGTCCTATTCAGAATAAAACAAGCCAAACCTTT  1000

seq1  -ATAACTGC-TTTTAAGAGGTG-TAATA-AGGTGG-CGCA-CGCCTTTAA  1034
       |||||||| ||||||||| || ||||| | |||| |||| |||||||| 
seq2  AATAACTGCTTTTTAAGAGTTGTTAATATATGTGGCCGCACCGCCTTTAT  1050

seq1  TCCC-AGCACTTGGG-AGGCAG-AGGGAGGCGGATTTC-TGAGTTTGAGG  1080
      |||| |||||||||| || ||| |||||||| |||||| |||| ||||| 
seq2  TCCCAAGCACTTGGGAAGCCAGAAGGGAGGC-GATTTCTTGAG-TTGAGC  1098

seq1  CCAGCCT  1087
      |||||||
seq2  CCAGCCT  1105