BAC Information

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BAC

Clone NameB6Ng01-350G14
Chromosome6 (Build37)
Map Location 77,052,528 - 77,083,910
singlet/doubletdoublet
Overlap geneCtnna2
Upstream geneEG546907, LOC100042952, LOC668153, EG668155, LOC100042956
Downstream geneLrrtm1, LOC668169
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350G14.bB6Ng01-350G14.g
ACCGA131088GA131089
length1,2101,005
definitionB6Ng01-350G14.b B6Ng01-350G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,052,528 - 77,053,728)(77,083,266 - 77,083,910)
sequence
gaattcacctaaattaattatctcagacaactgaacagtatttaatatgt
gaattgttcattgacttctgattttacattggctcacatatttacaagct
gatgaggacctcagagtcagcacagaacacatgcagataccaaattctcg
gcacaaaggagacttattatgaccttcaagggataagcaggggtcgtggc
tgcctctgggacagacacagatagcaataggtctttctgcaggagtagtt
ttgaaggagacaaggtgtgtgctagggtgagtttgtaattcctgattgga
caggttagtcagtgtaaccaaataatgagtcttgcttgatggaccttggt
gttttgatagctggaccttggagttttagcctggcataagatagtggaaa
aataagggaacagaacttggtggctagctttagaaatataatctaatgct
ttagcaaagaagagggaagcggggagggcaggacctgcaggtgccatgtt
tgcaatgcttgggcttgctagagagccctttaaaggtcaaaggagatcca
aagtacttacatctgtcagtcatggaccgaagtcatggctcagataaagg
gtgataaatccatattttcaatcctttggtggtccagggcagcatgagtt
ccccctaaaatcctaaatatcactttcacttaagacttagtgccagttag
ataccactatattgaaccattctccttgtaacctccaaatacctaagatc
aagataattatttgtttcttctattttcccatgaatttttaagtttctat
tcatttgcgttttgtctgcatgtatatctgtgtgagggcctaagaactgg
aactacaaacaggcatgagctgccccggtggtacaagggagcaaacccgg
gtcctctggaggagcgaccagtgctcttcttttttttataaggcattttt
attagatattttcttcatttacatttcaaatgctattcccaaagccccta
taccctttgcccatcctgctccccaactcacccagtcccaaattcctggc
cctggcatccctgtactgggggtaatatgatcttcatagacagggccttc
ttcctccattgatggctgtctaggcttatctcttgcctaacatatgcaac
ttagagaacacagctctggaaggtacctataagtctaatatcgtttgatt
cctcctatat

gaattcttgtttgagacatgtaagagagagaaaaaacctgtggttttttt
cctactgttacatattcacaacagaatatttaccttcagtcaccaataaa
ggaatttttttctatacaactgacaagttcgctaacattagcttgaatac
ttcaattacattctgaaattatctacccaaggagagcttcagtcccacaa
ggccacaccacagctcactctacatgctacttgtaagcaataggtggcca
ccaatggttctgccttcccaaccatccaaataagttttgattaatgtgtc
agagtgactcttagctctcaggggcactcttaacttgcactaagcagttt
attataaagaactttacagggatacagatgaaaagacacatgggcagata
tctatctcttgggaggtccataaggagactgtgctatctcctgctgtacc
agaaccaacagaatgtgaagctggaaacattctgactgccattttcaatg
ctgtcctttcaagttcttgtggtgactttgttccaaaggcacaattgatt
tgatcactagccatgggtaatcaattcatccgtaggcctctttcatttcc
acagaagttgggagtcagagaacagctacagcttctaaccctgtagtcac
ctggctgtttgccccagcaaccactcttttactgagatcacctgagcacc
cccccaaaaaaagacttctcattagaatggaggatgtgcctctctcccag
gaatttctaagggcttaagaaccgttggttagatgtcaccaaacaggaaa
ttacagaagcttagggtttctgtgtcaggaactgaggtcagagatgaaat
aacaaacagacatctagctggtgctctcatctgcaaggattatctgtgta
atgaactacaggtagatatatagacttgtttctgtttacagggcctctac
cccattggcctagattagaaagaagcagtctgactgattgctcccagcac
ctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_77052528_77053728
seq2: B6Ng01-350G14.b_50_1259

seq1  GAATTCACCTAAATTAATTATCTCAGACAACTGAACAGTATTTAATATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTAAATTAATTATCTCAGACAACTGAACAGTATTTAATATGT  50

seq1  GAATTGTTCATTGACTTCTGATTTTACATTGGCTCACATATTTACAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTTCATTGACTTCTGATTTTACATTGGCTCACATATTTACAAGCT  100

seq1  GATGAGGACCTCAGAGTCAGCACAGAACACATGCAGATACCAAATTCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGACCTCAGAGTCAGCACAGAACACATGCAGATACCAAATTCTCG  150

seq1  GCACAAAGGAGACTTATTATGACCTTCAAGGGATAAGCAGGGGTCGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGGAGACTTATTATGACCTTCAAGGGATAAGCAGGGGTCGTGGC  200

seq1  TGCCTCTGGGACAGACACAGATAGCAATAGGTCTTTCTGCAGGAGTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGGGACAGACACAGATAGCAATAGGTCTTTCTGCAGGAGTAGTT  250

seq1  TTGAAGGAGACAAGGTGTGTGCTAGGGTGAGTTTGTAATTCCTGATTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGAGACAAGGTGTGTGCTAGGGTGAGTTTGTAATTCCTGATTGGA  300

seq1  CAGGTTAGTCAGTGTAACCAAATAATGAGTCTTGCTTGATGGACCTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTAGTCAGTGTAACCAAATAATGAGTCTTGCTTGATGGACCTTGGT  350

seq1  GTTTTGATAGCTGGACCTTGGAGTTTTAGCCTGGCATAAGATAGTGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATAGCTGGACCTTGGAGTTTTAGCCTGGCATAAGATAGTGGAAA  400

seq1  AATAAGGGAACAGAACTTGGTGGCTAGCTTTAGAAATATAATCTAATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGGAACAGAACTTGGTGGCTAGCTTTAGAAATATAATCTAATGCT  450

seq1  TTAGCAAAGAAGAGGGAAGCGGGGAGGGCAGGACCTGCAGGTGCCATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAAGAAGAGGGAAGCGGGGAGGGCAGGACCTGCAGGTGCCATGTT  500

seq1  TGCAATGCTTGGGCTTGCTAGAGAGCCCTTTAAAGGTCAAAGGAGATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGCTTGGGCTTGCTAGAGAGCCCTTTAAAGGTCAAAGGAGATCCA  550

seq1  AAGTACTTACATCTGTCAGTCATGGACCGAAGTCATGGCTCAGATAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTACATCTGTCAGTCATGGACCGAAGTCATGGCTCAGATAAAGG  600

seq1  GTGATAAATCCATATTTTCAATCCTTTGGTGGTCCAGGGCAGCATGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAATCCATATTTTCAATCCTTTGGTGGTCCAGGGCAGCATGAGTT  650

seq1  CCCCCTAAAATCCTAAATATCACTTTCACTTAAGACTTAGTGCCAGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTAAAATCCTAAATATCACTTTCACTTAAGACTTAGTGCCAGTTAG  700

seq1  ATACCACTATATTGAACCATTCTCCTTGTAACCTCCAAATACCTAAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACTATATTGAACCATTCTCCTTGTAACCTCCAAATACCTAAGATC  750

seq1  AAGATAATTATTTGTTTCTTCTATTTTCCCATGAATTTTTAAGTTTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATTATTTGTTTCTTCTATTTTCCCATGAATTTTTAAGTTTCTAT  800

seq1  TCATTTGCGTTTTGTCTGCATGTATATCTGTGTGAGGGCCTAAGAACTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCGTTTTGTCTGCATGTATATCTGTGTGAGGGCCTAAGAACTGG  850

seq1  AACTACAAACAGGCATGAGCTGCCCCGGTGGTACAAGGGAGCAAACCCGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAAACAGGCATGAGCTGCCCCGGTGGTACAAGGGAGCAAACCCGG  900

seq1  GTCCTCTGGAGGAGCGACCAGTGCTCTTC-TTTTTTTATAAGGCATTTTT  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCCTCTGGAGGAGCGACCAGTGCTCTTCTTTTTTTTATAAGGCATTTTT  950

seq1  ATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCCAAAGCCCCCT  999
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  ATTAGATATTTTCTTCATTTACATTTCAAATGCTATTCCCAAAG-CCCCT  999

seq1  ATACCC-TTGCCCATCCTGCTCCCCAACTCACCCAGTCCC-AATTCCTGG  1047
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  ATACCCTTTGCCCATCCTGCTCCCCAACTCACCCAGTCCCAAATTCCTGG  1049

seq1  CCCTGGCATTCCCCTGTACTGGGG--TATATGATCTTCATAAGACCAAGG  1095
      |||||||||  |||||||||||||   ||||||||||||| ||||  |||
seq2  CCCTGGCAT--CCCTGTACTGGGGGTAATATGATCTTCAT-AGAC--AGG  1094

seq1  GCC-TCTCCTCCCATTGATGGCTGTCTAGGC-TATCCTCTGC--TACATA  1141
      ||| ||| |  |||||||||||||||||||| ||||   |||   |||||
seq2  GCCTTCTTCCTCCATTGATGGCTGTCTAGGCTTATCTCTTGCCTAACATA  1144

seq1  TGCAAC-TAGAG-ACACAGCTCTGG-AGGTACTAATTAGT-TCATATCGT  1187
      |||||| ||||| |||||||||||| ||||||  || ||| | |||||||
seq2  TGCAACTTAGAGAACACAGCTCTGGAAGGTACCTATAAGTCTAATATCGT  1194

seq1  T--GTTCCTCCTATAT  1201
      |   ||||||||||||
seq2  TTGATTCCTCCTATAT  1210


seq1: chr6_77083266_77083910
seq2: B6Ng01-350G14.g_70_714 (reverse)

seq1  TACAGGGTTAGAAGCTGTAGCTGTTCTCTGACTCCCAACTTCTGTGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGTTAGAAGCTGTAGCTGTTCTCTGACTCCCAACTTCTGTGGAAA  50

seq1  TGAAAGAGGCCTACGGATGAATTGATTACCCATGGCTAGTGATCAAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGGCCTACGGATGAATTGATTACCCATGGCTAGTGATCAAATCA  100

seq1  ATTGTGCCTTTGGAACAAAGTCACCACAAGAACTTGAAAGGACAGCATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCCTTTGGAACAAAGTCACCACAAGAACTTGAAAGGACAGCATTG  150

seq1  AAAATGGCAGTCAGAATGTTTCCAGCTTCACATTCTGTTGGTTCTGGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCAGTCAGAATGTTTCCAGCTTCACATTCTGTTGGTTCTGGTAC  200

seq1  AGCAGGAGATAGCACAGTCTCCTTATGGACCTCCCAAGAGATAGATATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGATAGCACAGTCTCCTTATGGACCTCCCAAGAGATAGATATCT  250

seq1  GCCCATGTGTCTTTTCATCTGTATCCCTGTAAAGTTCTTTATAATAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGTGTCTTTTCATCTGTATCCCTGTAAAGTTCTTTATAATAAACT  300

seq1  GCTTAGTGCAAGTTAAGAGTGCCCCTGAGAGCTAAGAGTCACTCTGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTGCAAGTTAAGAGTGCCCCTGAGAGCTAAGAGTCACTCTGACAC  350

seq1  ATTAATCAAAACTTATTTGGATGGTTGGGAAGGCAGAACCATTGGTGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCAAAACTTATTTGGATGGTTGGGAAGGCAGAACCATTGGTGGCC  400

seq1  ACCTATTGCTTACAAGTAGCATGTAGAGTGAGCTGTGGTGTGGCCTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTGCTTACAAGTAGCATGTAGAGTGAGCTGTGGTGTGGCCTTGTG  450

seq1  GGACTGAAGCTCTCCTTGGGTAGATAATTTCAGAATGTAATTGAAGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAAGCTCTCCTTGGGTAGATAATTTCAGAATGTAATTGAAGTATT  500

seq1  CAAGCTAATGTTAGCGAACTTGTCAGTTGTATAGAAAAAAATTCCTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTAATGTTAGCGAACTTGTCAGTTGTATAGAAAAAAATTCCTTTAT  550

seq1  TGGTGACTGAAGGTAAATATTCTGTTGTGAATATGTAACAGTAGGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTGAAGGTAAATATTCTGTTGTGAATATGTAACAGTAGGAAAAA  600

seq1  AACCACAGGTTTTTTCTCTCTCTTACATGTCTCAAACAAGAATTC  645
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGGTTTTTTCTCTCTCTTACATGTCTCAAACAAGAATTC  645


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