BAC Information

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BAC

Clone NameB6Ng01-350L12
Chromosome6 (Build37)
Map Location 44,800,034 - 44,801,104
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350L12.bB6Ng01-350L12.g
ACCGA131310GA131311
length9821,075
definitionB6Ng01-350L12.b B6Ng01-350L12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggagagctagagaagtagccaaggagctaa
gaattctctgagtattaaagtaggctggctttaggccaaaatgaaaaaaa
tatgcagagttttccttcagctgctgactgttcaaatgcgctgcaggagt
ggaggagggattatagaatgtgtcctgaaaactccttcagggtttgcaaa
cctgaggcgcgtcgtgccatgttctggcctctctgtcatatattttcata
aaagtgaactgaagttaaatgaatatttaaaattggcttgaaggagcatg
ggagtcagaaaaaaagcagcatggcattagagttgtatagagttttatgg
gaggcttggctttgccagggtagttgacactgtttattgttacagggtac
ttagatttctgtaggatctgctgacacaagtacatgctctgctggtgata
ggcttataagtcattgctcaaccctgaaattggcatggactccaaacatg
atctccaaagataatattcctaccatcactgacatacagattttcttttc
tgaagtacacaaacatcatgcttcttctcaacaacaaatcactcagccaa
cataggagccacaactacatactcattgtcataaggcacactgattcaga
tattatctaatagattctaattattagcccacacgattccctattatcct
ttctgctttccagctaaagaagctaagcaagaagcagctacacttcttca
agttcatacagggaattcttgtctgcaaataattatatatccaacctatc
agcccaacatattttgcactgttctggttaaccagagcagttatctgtta
tggtgatatatctctaatttgtaaatctgttttgcttttattacttttgt
tttgggtttgtttgctttacgacagccccataacccacactagccttcaa
ctgtttcggtaactgaggttgactttgaactgtgatcccctaactccata
cccagagtactgtgattatagggaatgtcgttacttatgtagtgtttgac
gaatggttttctgaatgatagtcttgagctgtgtctgaatacattttcta
acagtgtagaaatggaccacactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44800034_44801104
seq2: B6Ng01-350L12.g_66_1140 (reverse)

seq1  ACAGTGT-GTCCATTTCTACCACTG-TAG-AAATGTATTCAGACACAGCT  47
      ||||||| ||||||||||| ||||| ||| ||||||||||||||||||||
seq2  ACAGTGTGGTCCATTTCTA-CACTGTTAGAAAATGTATTCAGACACAGCT  49

seq1  C-AGACTATCATTCAGAAAACCATTCGTCAAACACTACATAAGTAACGAC  96
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTATCATTCAGAAAACCATTCGTCAAACACTACATAAGTAACGAC  99

seq1  ATT-CCTATAATCACAGTACTCTGGGTATGGAGTTAGGGGATCACAGTTC  145
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTATAATCACAGTACTCTGGGTATGGAGTTAGGGGATCACAGTTC  149

seq1  AAAGTCAACCTCAGTTACCGAAACAGTTGAAGGCTAGTGTGGGTTATGGG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAACCTCAGTTACCGAAACAGTTGAAGGCTAGTGTGGGTTATGGG  199

seq1  GCTGTCGTAAAGCAAACAAA-CCAAAACAAAAGTAATAAAAGCAAAACAG  244
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCTGTCGTAAAGCAAACAAACCCAAAACAAAAGTAATAAAAGCAAAACAG  249

seq1  ATTTACAAATTAGAGATATATCACCATAACAGATAACCTGCTCTGGTTAA  294
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTTACAAATTAGAGATATATCACCATAACAGATAA-CTGCTCTGGTTAA  298

seq1  CCAGAACAGTGCAAAATATGTTGGGCTGATAGGTTGGATATATAATTATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACAGTGCAAAATATGTTGGGCTGATAGGTTGGATATATAATTATT  348

seq1  TGCAGACAAGAATTCCCTGTATGAACTTGAAGAAGTGTAGCTGCTTCTTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACAAGAATTCCCTGTATGAACTTGAAGAAGTGTAGCTGCTTCTTG  398

seq1  CTTAGCTTCTTTAGCTGGAAAGCAGAAAGGATAATAGGGAATCGTGTGGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTTCTTTAGCTGGAAAGCAGAAAGGATAATAGGGAATCGTGTGGG  448

seq1  CTAATAATTAGAATCTATTAGATAATATCTGAATCAGTGTGCCTTATGAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAATTAGAATCTATTAGATAATATCTGAATCAGTGTGCCTTATGAC  498

seq1  AATGAGTATGTAGTTGTGGCTCCTATGTTGGCTGAGTGATTTGTTGTTGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTATGTAGTTGTGGCTCCTATGTTGGCTGAGTGATTTGTTGTTGA  548

seq1  GAAGAAGCATGATGTTTGTGTACTTCAGAAAAGAAAATCTGTATGTCAGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCATGATGTTTGTGTACTTCAGAAAAGAAAATCTGTATGTCAGT  598

seq1  GATGGTAGGAATATTATCTTTGGAGATCATGTTTGGAGTCCATGCCAATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTAGGAATATTATCTTTGGAGATCATGTTTGGAGTCCATGCCAATT  648

seq1  TCAGGGTTGAGCAATGACTTATAAGCCTATCACCAGCAGAGCATGTACTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTTGAGCAATGACTTATAAGCCTATCACCAGCAGAGCATGTACTT  698

seq1  GTGTCAGCAGATCCTACAGAAATCTAAGTACCCTGTAACAATAAACAGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGCAGATCCTACAGAAATCTAAGTACCCTGTAACAATAAACAGTG  748

seq1  TCAACTACCCTGGCAAAGCCAAGCCTCCCATAAAACTCTATACAACTCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTACCCTGGCAAAGCCAAGCCTCCCATAAAACTCTATACAACTCTA  798

seq1  ATGCCATGCTGCTTTTTTTCTGACTCCCATGCTCCTTCAAGCCAATTTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGCTGCTTTTTTTCTGACTCCCATGCTCCTTCAAGCCAATTTTA  848

seq1  AATATTCATTTAACTTCAGTTCACTTTTATGAAAATATATGACAGAGAGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCATTTAACTTCAGTTCACTTTTATGAAAATATATGACAGAGAGG  898

seq1  CCAGAACATGGCACGACGCGCCTCAGGTTTGCAAACCCTGAAGGAGTTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACATGGCACGACGCGCCTCAGGTTTGCAAACCCTGAAGGAGTTTT  948

seq1  CAGGACACATTCTATAATCCCTCCTCCACTCCTGCAGCGCATTTGAACAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACATTCTATAATCCCTCCTCCACTCCTGCAGCGCATTTGAACAG  998

seq1  TCAGCAGCTGAAGGAAAACTCTGCATATTTTTTTCATTTTGGCCTAAAGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCTGAAGGAAAACTCTGCATATTTTTTTCATTTTGGCCTAAAGC  1048

seq1  CAGCCTACTTTAATACTCAGAGAATTC  1071
      |||||||||||||||||||||||||||
seq2  CAGCCTACTTTAATACTCAGAGAATTC  1075