BAC Information

Click to search

BAC

Clone NameB6Ng01-350L21
Chromosome6 (Build37)
Map Location 78,378,723 - 78,379,839
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1
Downstream geneReg3g, LOC621716, Ppia-ps6_789.1, LOC384440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350L21.bB6Ng01-350L21.g
ACCGA131328GA131329
length1,1641,118
definitionB6Ng01-350L21.b B6Ng01-350L21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgatggtgtcttttgccttgcagaaaatttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgggaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttctgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatgggaattgcattgaatctgtagattgcatttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcacgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagtagagtcacgccagatatttatattatttg
tgactattgagaagggtgttgtttcctaatttctttctcagcctgtttat
ctttgtatagagaagcatgactgttgagttattttatatcagctactcac
ggagctgttatcagtaagagtcttctgttagatttaagttcacttaatta
tacctatccatctcacttgcaaacgtgattagaactcctatccaatgtat
cccattgaatcctc
gaattctcaggctttctttgataaggaggtgtttttaactctgttcagat
gcatgttagtttatgagcctgttgtcaatatagttggatgaatgcataaa
atttctatctaaaatctataagtgtgaatgatgtttataagaattattag
agtttggagcctgaatgcctggtttgtcttgatattctggagggatttac
acagtaatattgtaagggaacttttttcctttgctccgttaagcaagtta
aagccatagtcaacatgtcaggagaattcttgggtctagaagagttaagg
aatcagtcatagaaaagtttgagtcctggaagcctataattaatgctaaa
taacaatctttacattactgaatcaatgaatttataaagaatgacccaaa
taaaatatactgtcatacttaattgactctataaatatataaaattctga
agtattaagggttaggattaaaaaaaaaaaaacaatactttttcagagaa
tcagctgaatcccaaacattgatgaccatcacagtacatttagatacaat
ttgtcaaatcaatacaaagggaacagattcgggttatcagcctgagtcat
agcaatgactacaacacaagaaaaacaaaaatacaagcctcacttatatt
acagacaaatagcttgaagacaaaatgatgggaaatctatagttcctata
taaccatgaaagcatctacatagctctagtggaatggtgtcacataatca
gacccttagttcttcggaaactgaggcaggagaattgcaagttacaggtc
agattgtgtatataagctccaggtcagcctggcataagtagtcagttctt
gcctgaataaaagcaaacacccaaaatatcctagacacaatagtgtttta
aatgtatcttgaaagtatttctacttaggtgtgtatggttttatttgggg
ctaggagttgtgtggccatgtgtgtaggtttccacaagaaggtgggggca
tcagtcccctggagctgtagttccaggtgatctgagtgccagacatgggt
gcccaggatcaaatgtgcaacctgcatgagtaaattacatggctttaact
gcctcaggcccatttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78378723_78379839
seq2: B6Ng01-350L21.g_69_1186

seq1  GAATTCTCAGGCTTTCTTTGATAAGGAGGTGTTTTTAACTCTGTTCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGCTTTCTTTGATAAGGAGGTGTTTTTAACTCTGTTCAGAT  50

seq1  GCATGTTAGTTTATGAGCCTGTTGTCAATATAGTTGGATGAATGCATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTAGTTTATGAGCCTGTTGTCAATATAGTTGGATGAATGCATAAA  100

seq1  ATTTCTATCTAAAATCTATAAGTGTGAATGATGTTTATAAGAATTATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATCTAAAATCTATAAGTGTGAATGATGTTTATAAGAATTATTAG  150

seq1  AGTTTGGAGCCTGAATGCCTGGTTTGTCTTGATATTCTGGAGGGATTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGAGCCTGAATGCCTGGTTTGTCTTGATATTCTGGAGGGATTTAC  200

seq1  ACAGTAATATTGTAAGGGAACTTTTTTCCTTTGCTCCGTTAAGCAAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATATTGTAAGGGAACTTTTTTCCTTTGCTCCGTTAAGCAAGTTA  250

seq1  AAGCCATAGTCAACATGTCAGGAGAATTCTTGGGTCTAGAAGAGTTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATAGTCAACATGTCAGGAGAATTCTTGGGTCTAGAAGAGTTAAGG  300

seq1  AATCAGTCATAGAAAAGTTTGAGTCCTGGAAGCCTATAATTAATGCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTCATAGAAAAGTTTGAGTCCTGGAAGCCTATAATTAATGCTAAA  350

seq1  TAACAATCTTTACATTACTGAATCAATGAATTTATAAAGAATGACCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATCTTTACATTACTGAATCAATGAATTTATAAAGAATGACCCAAA  400

seq1  TAAAATATACTGTCATACTTAATTGACTCTATAAATATATAAAATTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATACTGTCATACTTAATTGACTCTATAAATATATAAAATTCTGA  450

seq1  AGTATTAAGGGTTAGGATTAAAAAAAAAAAAACAATACTTTTTCAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAAGGGTTAGGATTAAAAAAAAAAAAACAATACTTTTTCAGAGAA  500

seq1  TCAGCTGAATCCCAAACATTGATGACCATCACAGTACATTTAGATACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGAATCCCAAACATTGATGACCATCACAGTACATTTAGATACAAT  550

seq1  TTGTCAAATCAATACAAAGGGAACAGATTCGGGTTATCAGCCTGAGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAATCAATACAAAGGGAACAGATTCGGGTTATCAGCCTGAGTCAT  600

seq1  AGCAATGACTACAACACAAGAAAAACAAAAATACAAGCCTCACTTATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGACTACAACACAAGAAAAACAAAAATACAAGCCTCACTTATATT  650

seq1  ACAGACAAATAGCTTGAAGACAAAATGATGGGAAATCTATAGTTCCTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAATAGCTTGAAGACAAAATGATGGGAAATCTATAGTTCCTATA  700

seq1  TAACCATGAAAGCATCTACATAGCTCTAGTGGAATGGTGTCACATAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATGAAAGCATCTACATAGCTCTAGTGGAATGGTGTCACATAATCA  750

seq1  GACCCTTAGTTCTTCGGAAACTGAGGCAGGAGAATTGCAAGTTACAGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTAGTTCTTCGGAAACTGAGGCAGGAGAATTGCAAGTTACAGGTC  800

seq1  AGATTGTGTATATAAGCTCCAGGTCAGCCTGGCATAAGTAGTCAGTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTGTATATAAGCTCCAGGTCAGCCTGGCATAAGTAGTCAGTTCTT  850

seq1  GCCTGAATAAAAGCAAACACCCAAAATATCCTAGACACAATAGTGTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAATAAAAGCAAACACCCAAAATATCCTAGACACAATAGTGTTTTA  900

seq1  AATGTATCTTGAAAGTATTTCTACTTAGGTGTGTATGGTTTTATTTGGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCTTGAAAGTATTTCTACTTAGGTGTGTATGGTTTTATTTGGGG  950

seq1  CTAGGAGTTGTGTGGCCATGTGTGTAGG-TTCCACAAGAAGGTGGGGGCA  999
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTAGGAGTTGTGTGGCCATGTGTGTAGGTTTCCACAAGAAGGTGGGGGCA  1000

seq1  TCAGGTCCCCTGGAGCTGTAGTTCCAGGTGATTCTGAGTTGCCAGACATG  1049
      ||| ||||||||||||||||||||||||||| |||||| |||||||||||
seq2  TCA-GTCCCCTGGAGCTGTAGTTCCAGGTGA-TCTGAG-TGCCAGACATG  1047

seq1  GGTGCCAGGAATCAAATGTGAAACCTGCATGAGTAAATTACATGCTTTAA  1099
      ||||||  | |||||||||| |||||||||||||||||||||||  || |
seq2  GGTGCCCAGGATCAAATGTGCAACCTGCATGAGTAAATTACATGGCTTTA  1097

seq1  ACTG-CTCAG--CCATTTCTC  1117
      |||| |||||  |||||||||
seq2  ACTGCCTCAGGCCCATTTCTC  1118