BAC Information

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BAC

Clone NameMSMg01-045C12
Chromosome6 (Build37)
Map Location 27,426,685 - 27,427,120
singlet/doubletsinglet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045C12.T7 (MSMg01no045_c12.b1)MSMg01-045C12.TJ (MSMg01no045_c12.g1)
ACCAG275858AG275859
length752758
length of high quality
(start - end)
300 (95 - 394)436 (163 - 598)
definitionCHROMAT_FILE: MSMg01no045_c12.b1 PHD_FILE: MSMg01no045_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:02 2005CHROMAT_FILE: MSMg01no045_c12.g1 PHD_FILE: MSMg01no045_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNCCCCTTTTNNNNNNTTTTCNTTACGGAAGG
TNNNTTCTAAATTGCGGCGCTAATAGATCACTATCGAAGAGGACCGCGGA
ATTCTCAACTGACGAAACTGAAGGGTAAGAAGCACTTGAAAAACTTTTCA
ACATCCTTAATCATCAAGGAAATGAAAATCAAAACAATCCTCAGATTCCA
CCTCACACCAGTCAGAATGGCTAGGTTCAAAAATTCAGGTGACAGCAGAT
GCTGGTGAGGATGTGGAGAAAGAGGAACACTGCTCCATTACTGGTGGGAT
TGCAAGATTGTACAACCACTTAGAAATCAGTCTGGCGGTATCCTCAGAAA
ACCGGACATAGTACTATAGGTAGATCCAGAAATACCTCTGGGCATATACC
CAGAAGGTGTTCCCACTGATAATGAGGACACATTGCTCCCACTATGGTTC
ATAATCAGCCCTAATTAATAATAAGCCTGAAGCCTTGAAAAGAACCCAAA
ATGGTCCCTTCAAAAAAAAGGAATCGGATTCCTGACAAAGGGGGGGAACA
TTTTTACCCCAATGGGAGGAACTATCCCCCCCTTTTTTAAAAAAACCACC
CAAATTTTTTGGAAACCTCCTGGGGGGAAATTGGGAAAGGGAACCCGGAG
GGAAAAAACACCCCTGGGAAGGGAGGGGAAACCCCACTTTAAAAAAAAAA
AGAGGGATTTGGGATGACACCTTTCCCCGGGTAACGGGGGGATATTTAAG
CC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCCCCTTTTNTTNNNNTTTTTTTTTTTTCNNNNCTCTATGATXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTATTAAGTTGAGATAAATCTTCCCTCCCTTTAGCCA
AAGATCCTATGACGTTTCAAATCCAGAGATTCTGGTATTCACAGATACTG
AGAGTAATAGAACTCCAGAACTATTACCCATACTCCATGATTTAAACTTT
AATGATAATAAATATATTGGTTGCTATAATAATTAGTAGATTAGAATTTT
ATATTTATAAGTCATAACAATATAATATAGATAGCTTCTCCTTAAAATGT
AACTGAATCTTTTGAGGGGATATAGGTTTTGGATGTAAGAAAGTACTCCA
GTGCCATTGAGCATTTAAGGTCAAGGAGTCTCTCAGGCTCCTCTTGCTGT
TCTATTTACAAAGGTTGAATTTTAGTGTACAGATAAAACCTGACTCATTC
TGTTAAACTCCATATTAACTACTCTGTGCCTCATTTTCTGCACTTAAAAA
AATGAAATAGAGGTAACACTGCATGAACGTGTCCCTAAGAATAAATGATA
GAAACCATTGTAACACTCAGTGAATATAAATTGCTGCGTGCACATTACTA
AATCACAGTTATTGTGTAGTGTGCATAAGCACTTTTCATTTGGGTTCCTG
GTTTACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_c12.g1 MSMg01no045_c12.g1 CHROMAT_FILE:
MSMg01no045_c12.g1 PHD_FILE: MSMg01no045_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:03 2005
         (436 letters)



>mm_chr6_27426485_27427320
          Length = 836

 Score =  843 bits (436), Expect = 0.0
 Identities = 436/436 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctattaagttgagataaatcttccctccctttagccaaagatcctatgacgtttcaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tctattaagttgagataaatcttccctccctttagccaaagatcctatgacgtttcaaat 577

                                                                       
Query: 61  ccagagattctggtattcacagatactgagagtaatagaactccagaactattacccata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ccagagattctggtattcacagatactgagagtaatagaactccagaactattacccata 517

                                                                       
Query: 121 ctccatgatttaaactttaatgataataaatatattggttgctataataattagtagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ctccatgatttaaactttaatgataataaatatattggttgctataataattagtagatt 457

                                                                       
Query: 181 agaattttatatttataagtcataacaatataatatagatagcttctccttaaaatgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agaattttatatttataagtcataacaatataatatagatagcttctccttaaaatgtaa 397

                                                                       
Query: 241 ctgaatcttttgaggggatataggttttggatgtaagaaagtactccagtgccattgagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctgaatcttttgaggggatataggttttggatgtaagaaagtactccagtgccattgagc 337

                                                                       
Query: 301 atttaaggtcaaggagtctctcaggctcctcttgctgttctatttacaaaggttgaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atttaaggtcaaggagtctctcaggctcctcttgctgttctatttacaaaggttgaattt 277

                                                                       
Query: 361 tagtgtacagataaaacctgactcattctgttaaactccatattaactactctgtgcctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tagtgtacagataaaacctgactcattctgttaaactccatattaactactctgtgcctc 217

                           
Query: 421 attttctgcacttaaa 436
           ||||||||||||||||
Sbjct: 216 attttctgcacttaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)