BAC Information

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BAC

Clone NameMSMg01-045C14
Chromosome6 (Build37)
Map Location 17,019,769 - 17,020,373
singlet/doubletsinglet
Overlap geneTes
Upstream geneLOC100041116, Tcfec, EG435881
Downstream geneEG232599, Cav2, Cav1, Met, Capza2, St7, Wnt2, Asz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045C14.T7 (MSMg01no045_c14.b1)MSMg01-045C14.TJ (MSMg01no045_c14.g1)
ACCAG275862AG275863
length6781,340
length of high quality
(start - end)		609 (43 - 651)---
definitionCHROMAT_FILE: MSMg01no045_c14.b1 PHD_FILE: MSMg01no045_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:03 2005CHROMAT_FILE: MSMg01no045_c14.g1 PHD_FILE: MSMg01no045_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTAAGGATTATGCTTCAAGTTCATAGTAAGGCTCTTCTATTCCAGATTA
AGTAATCTGAACCGGGGTTTCTTCATGATCAAAAAATGACACTATGGCCC
TCAGAGGACAGTTCTGAACAAGAACCAAAATTATCAACTATTATAAAATA
TGAATTTATCTCTCAAGCTTAATATCTGGGTAAAAAGGTAAAGCTATAAA
TGTATCTGTCATCTACAAATTGACTATCTTAAGAGGTAAAGAAACATGCT
TTGGGAATTTAGAATCAGTTGTTTTTCTTGTAGGCAGGAACATGGGAGAT
TTCCTAGAAGAGCGTACATAAGTTACAATAGGACAGACCTTGAAGAATGG
GTTTATAAGATTAGTAGTGTAGAGAGTTGCAGGTTATAAGATTTAGTGGT
GAACTTGAAACCCGAACACGACACAATGTTATTTAGGACAGAGTGCAGAG
TTGTGACTATCCGTGTTCACTGTCAGCTTGACGGGATCTTAAACTCACCT
AGGAGATAGGCTTCTGACCATCTTTATCTGGTTTAATTAAGAGGGGGAGG
TGGCACCATCTCCCTGTGCTTGTATCCTAGACTGTAGAAATGGAAGAAAG
GAGCTGAAGAGCAATGTATACTCATGGC

NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNNNNNNNCCCC
TTCCCCNNNNCCGGNNNNNNNCCACNNAACNNAACACGCAAGGATAGAGG
GGGTAGGCGCTGAGGGGGGCCCGCCGTGTGTCTCCGCGTACATATATGAC
GGTGTACAACTATAAGGGAATGTATTCCCGCGCGTAATTCCTTCTGCTAA
CACTTCGAGCGTTACCTTTCTTTAACAGATCCGCGACGCGGGCAACAATG
GAGAGTCCGTCCGCTCATACTCGGCGCTCGTGCAGTGCGCGTGCCGCGTC
ACATACTTACTTTCCAACATGCGTGAATAGTATATCCCTCCGCGCGTTCT
CGTCCGATCGGTGTGTGTGCCCTAGGCGTGTCGGCCAGCCTTCGCAGCGC
TCGCATCACGCTCGCGCTCCGAACGGTTGGACCACACCTGGAGAATTCCC
ATCGCTGACCTTCTCCTTTGTACTCTTGTTCACTATCTCTTTGTCACCTA
CACGCCCTGTACTGCCCTCTGCCGTACACTTGTGTAGCTCACCTATCAGT
GCTATGTAGCGCTTTCCGGGCCGTTGATTCTCTAATGCGCGCGCCGTACA
CCCTAGCGGAGACGCGGTGATCCTATCTCTAGTGCAAGCTTTACGAACGC
GGACCCTATGGCATGTGACGATTGACGACGTTCTAAGTAGCGTCGATGAT
AGGTTACCCGTGTATAATAAACTCACGTGTTGAGTGCAGAGGCGGCCGTG
GCGCGGTGGCGCGCGCGCGAAGTAGTGCTCGACTGTGCGCCGCTCGTCCC
TAGCGAGCCTCCTCCCTATTGTCTGCTCCATTGACCTCTTATGCGCAGCG
GGATTCTTCCTCGCCCGTACTATTATATTGCACTGCGTGGTTGTTCGACT
GTACTCGCGTACAGCGCCGCCACTTATCCCGTCTCCGTGTGTTGGCGCGC
GACGCTATATATGGGTGACGCAATGTATACCGTTTGTAGCAGACTCGACC
GCGGACGGGCGCCTCTGATGTGTGATGTCTATCGCGACCGCTGAGCATAC
TACCTCTATTATCTCGAGAGACNGCGAGACAATATGTGTTGCCAGCATTT
TCGTCCTGGCTCGAGATCGGGACGTCATATCTGATAGTTCTGTCGTACAC
ATAGTTGTCAGATCTGCGTCGCCATATCAGTGCCGCCTCGGCTATATCNT
GCTTGACGTCTGCAGTACGCGCAATATACGCGAGTTGNACGAGAGATGTA
ACGCACGCGCGGAGAAGNATAGACGCTATTGAGAGTCACATCGATATTGC
TAAGATCGCGCTCTATCGTGATATGACTGCACGACATTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_c14.b1 MSMg01no045_c14.b1 CHROMAT_FILE:
MSMg01no045_c14.b1 PHD_FILE: MSMg01no045_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:03 2005
         (609 letters)



>mm_chr6_17019701_17020709
          Length = 1009

 Score = 1064 bits (550), Expect = 0.0
 Identities = 592/606 (97%), Gaps = 2/606 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaggattatgcttcaagttcatagtaaggctcttctattccagattaagtaat 64
           |||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 673 gaattctaaggaatatggttcaagttcatagtaaggctcttctatttcagattaagtaat 614

                                                                       
Query: 65  ctgaaccggggtttcttcatgatcaaaaaatgacactatggccctcagaggacagttctg 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctgaaccggggtttcttcatcatcaaaaaatgacactatggccctcagaggacagttctg 554

                                                                       
Query: 125 aacaagaaccaaaattatcaactattataaaatatgaatttatctctcaagcttaatatc 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 553 aacaagaaccaaaattatcaagtattataaaatatgaatttatctctcaagcttagtatc 494

                                                                       
Query: 185 tgggtaaaaaggtaaagctataaatgtatctgtcatctacaaattgactatcttaagagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgggtaaaaaggtaaagctataaatgtatctgtcatctacaaattgactatcttaagagg 434

                                                                       
Query: 245 taaagaaacatgctttgggaatttagaatcagttgtttttcttgtaggcaggaacatggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 taaagaaacatgctttgggaatttagaatcagttgtttttcttgtaggcaggaacatggg 374

                                                                       
Query: 305 agatttcctagaagagcgtacataagttacaataggacagaccttgaagaatgggtttat 364
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 373 agatttcctagaagagcgtacataagttacaataggactgaccttgaagaatgggtttat 314

                                                                       
Query: 365 aagattagtagtgtagagagttgcaggttataagatttagtggtgaacttgaaacccgaa 424
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 313 aagattagtagtgtagagagttgcaggttataagatttagtagtgaacttgaaacccgaa 254

                                                                       
Query: 425 cacgacacaatgttatttaggacagagtgcagagttgtgactatccgtgttcactgtcag 484
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 253 cacgacacaatgttatttaggacggagtgcagagttgtgactatccgtgttcactgtcag 194

                                                                       
Query: 485 cttgacgggatcttaaactcacctaggagataggcttctgaccatctttatctggtttaa 544
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 193 cttgacgggatcttaaactcacctaggagataggcctctgaccatctttatctggtttaa 134

                                                                       
Query: 545 ttaagagggggaggtggcaccatctccct-gtgcttgtatcctagactgtagaaatggaa 603
           |||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| 
Sbjct: 133 ttaagaggggaaggtggcaccatctccctag-gcttgtatcctagactgtagaaatggac 75

                 
Query: 604 gaaagg 609
           ||||||
Sbjct: 74  gaaagg 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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