Query= MSMg01no045_d21.b1 MSMg01no045_d21.b1 CHROMAT_FILE:
MSMg01no045_d21.b1 PHD_FILE: MSMg01no045_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:09 2005
(475 letters)
>mm_chr6_95321440_95322314
Length = 875
Score = 804 bits (416), Expect = 0.0
Identities = 455/468 (97%)
Strand = Plus / Plus
Query: 5 ggaattcttcatgggagacgcccaccccatccattcatctagtcaccatcactacgccat 64
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctgcatgggagatgcccaccccatccattcatctagtcaccatcactacgccat 264
Query: 65 gtggtctcaggtatatttatttcatattctgtctcataatgtgactttcttcacttgctc 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 gttgtctcaggtatatttatttcatattctgtctcataatgtgactttcttcacttgttc 324
Query: 125 acattttctaggctctgactatggagagttcatttgggtctcctttgacaaaattccatt 184
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 gcattttctaggctctgactatggagagttcacttgggtctcctttgacaaaattccatt 384
Query: 185 gcaccgaggttctgtatgaaattatttatgaatcatctttactttgtgacagtacacggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaccgaggttctgtatgaaattatttatgaatcatctttactttgtgacagtacacggt 444
Query: 245 gctctcggttcagtgtctgtacccccctttctcattctccctgcttccttttattggaga 304
||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct: 445 gctctcggttcagtgtctgtaccccccttcctcgttctccctgcttcctttcattggaga 504
Query: 305 atagttttagatgtcaggatctggctcctggtgtgctccattgttggagagtgtgtgggt 364
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atagttttagaagtcaggatctggctcctggtgtgctccattgttggagagtgtgtgggt 564
Query: 365 atgggtgcctttacttcagctgccaaaccaaagaaattatatgaatatgttagtatatac 424
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 565 gtgggtgtctttacttcagctgccaaaccaaagagattatatgaatatgttagtatatac 624
Query: 425 atgtgtctataaatactgctgtgtgtgtgtgtgtgtgtgtgtgtgtgt 472
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgtgtctataaatactgctgtgtgtgtgtgtgtgtgtgtgtgtgtgt 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_d21.g1 MSMg01no045_d21.g1 CHROMAT_FILE:
MSMg01no045_d21.g1 PHD_FILE: MSMg01no045_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:09 2005
(625 letters)
>mm_chr6_95479329_95480353
Length = 1025
Score = 1048 bits (542), Expect = 0.0
Identities = 571/582 (98%), Gaps = 4/582 (0%)
Strand = Plus / Minus
Query: 46 acacgcacacacacatgcacacacacacg--cacacacacatatgtaaaaattaatagac 103
|||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 864 acacacacacacaca--cacacacacacgcacacacacacatatgtaaaaattaatagac 807
Query: 104 ataaaggaaccggtcctgttaagcctttcctttatctttagttgactactatcccagcca 163
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 806 ataaaggaaccggtcctgttaagcctttcctttatgtttagttgactactatcccagcca 747
Query: 164 ttgtaaactgcatcaccctccctctcctatcccagtgctggaagatagttctagctcatt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttgtaaactgcatcaccctccctctcctatcccagtgctggaagatagttctagctcatt 687
Query: 224 tttattgggcccccatacatgcaatgcatatatgacaatctagctgtctaccctcagcta 283
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tttattgggcccccatacatgtaatgcatatatgacaatctagctgtctaccctcagcta 627
Query: 284 gcctcctgtttcaggttcctgagagctaaaggaagatatgcaccttcatacccagaggct 343
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 626 gcctcctgtttcaggttcctgagagctaaaggaagatatgcaccttcatacccagaggtt 567
Query: 344 attgtagccttaccctctgttcacttcttttcacagattcctgtgtagatgcttgggcat 403
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 566 attgtagtcttaccctctgttcacttcctttcacagattcctgtgtagatgcttgggcat 507
Query: 404 tggcctttcaaagagatttctactaattatttctttgttcgatttgcgtatgcagcaagt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tggcctttcaaagagatttctactaattatttctttgttcgatttgcgtatgcagcaagt 447
Query: 464 gcgtatgcgttcacactggactggcatgggcctgcaggatcagcgctccccagcttttcc 523
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 446 gcgtatgcgttcacactggactggcatgggcctgcaggatcagtgctccccagcttttcc 387
Query: 524 tttccaaggactttgtcaacattgagtgtgtgttctggcatcttggatttgccctggtgg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttccaaggactttgtcaacattgagtgtgtgttctggcatcttggatttgccctggtgg 327
Query: 584 gttatttttaataatgccaaaagatacaaaaagcctttacac 625
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttatttttaataatgccaaaagatacaaaaagcctttacac 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
