BAC Information

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BAC

Clone NameMSMg01-045J20
Chromosome6 (Build37)
Map Location 129,828,296 - 129,828,891
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17
Downstream geneKlra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045J20.T7 (MSMg01no045_j20.b1)MSMg01-045J20.TJ (MSMg01no045_j20.g1)
ACCAG276201AG276202
length679682
length of high quality
(start - end)		594 (43 - 636)597 (74 - 670)
definitionCHROMAT_FILE: MSMg01no045_j20.b1 PHD_FILE: MSMg01no045_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:36 2005CHROMAT_FILE: MSMg01no045_j20.g1 PHD_FILE: MSMg01no045_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:37 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAACAGAGGCATATGGAATGCCTGACAAGCACTTAAGTAAATGTTCA
AAGTCCTTAGTCATCAGTAAAATGGAAATCAAAACAACTCTGAGGTTCCA
TCTTAGATCTTTCAGAATTTCTAAGATCAAAAACTTGAGTGATAGCATGT
GCTAGAGAAGACTGGTAGCAAAGGGAACACTTCCATTGCTGGTGGGAGTA
AAACCGTGTACAACCACTTTGGAGATCAATTTGGTCATTTTTCAGAAAAC
TGGGAATAGTTCTATCTCAAGACCCAATTATATTACTTCAGGGCATGTAC
CTAAAAGATGCTTTATCATCCCACAAAGATGCCTACTCAACTATGTTCCT
AGTAGCTGTATTTGTAATAGTCAGAAACTGGAAATAACCTAGATGCCTCT
CAACTGAAGAATGGATAAAAATGTGGTAAATCTACACAATGGAATACTAT
TCAGCTATTATAAACAAAGGTATAATGAATTTGGCAGGCAAATGAATGCA
ACTTGAGGATCTCATCCTGAGTGAGGTAACTGAGTCTCACAAGGACATGC
ACAGTATGTATTCACTTATAAGTGGATATTAGTCATAAAATAGAGGATGT
CTGTACTATATTCCACAGAACAGGAAAGA

CGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATCTCAAATATGTGACCAACATTCA
TAAAAGAAAAATTGCCCCATCTCATCTCTAAAATATTCAATTTTGAATAT
TTTCATGCCAACTAATAGTTAAGTTAGTTAGTTGTCATGTAGTAATCTAT
ATTAGAGTTCCTAAAATGTATATTCCTTTGAATCCAGTGACTTCATTCCT
AAAATATCTTTGTTAGTGTGTTCTAAAGTATATTCCATGAATTTTGTAAG
CTGACAACAATAAAATACTATAAAACAACCTGAACGTTCAGCAGCAGAGA
ATTATCTAATTAATTTATGTTGTATATAAGTGATTAATTGATATATATGG
CTTTAAATATCTTGAGATCTAGATATATAAAATGAAGAAATTCTCATTAT
TGATTAGAAAAATTACTATGACAAAAATGGAGTATATTGGTGTAGTGGTA
TACAGCTATAAATCTAAGACAGAAAAGAGTGAGTCCAGAGAATTGTGAGT
ATATGGTGAATCTATGCCACAGGTAAGATGCAACAACTATCTCAGATAAC
AGCAACTTAAAATCAAATCATAATAAAATACCTGAACAAAACAAAATCAA
GTCCTTTGCTCAGTGGAAGATATTTTCTGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_j20.g1 MSMg01no045_j20.g1 CHROMAT_FILE:
MSMg01no045_j20.g1 PHD_FILE: MSMg01no045_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:37 2005
         (597 letters)



>mm_chr6_129828096_129829091
          Length = 996

 Score = 1139 bits (589), Expect = 0.0
 Identities = 595/597 (99%), Gaps = 1/597 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatctcaaatatgtgaccaacattcataaaagaaaaattgccccatctcatctctaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tcatctcaaatatgtgaccaacattcataaaagaaaaattgccccatctcatctctaaaa 737

                                                                       
Query: 61  tattcaattttgaatattttcatgccaactaatagttaagttagttagttgtcatgtagt 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 736 tattcaattttgaatattttcatgccaactgatagttaagttagttagttgtcatgtagt 677

                                                                       
Query: 121 aatctatattagagttcctaaaatgtatattcctttgaatccagtgacttcattcctaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aatctatattagagttcctaaaatgtatattcctttgaatccagtgacttcattcctaaa 617

                                                                       
Query: 181 atatctttgttagtgtgttctaaagtatattccatgaattttgtaagctgacaacaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atatctttgttagtgtgttctaaagtatattccatgaattttgtaagctgacaacaataa 557

                                                                       
Query: 241 aatactataaaacaacctgaacgttcagcagcagagaattatctaattaatttatgttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aatactataaaacaacctgaacgttcagcagcagagaattatctaattaatttatgttgt 497

                                                                       
Query: 301 atataagtgattaattgatatatatggctttaaatatcttgagatctagatatataaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atataagtgattaattgatatatatggctttaaatatcttgagatctagatatataaaat 437

                                                                       
Query: 361 gaagaaattctcattattgattagaaaaattactatgacaaaaatggagtatattggtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaagaaattctcattattgattagaaaaattactatgacaaaaatggagtatattggtgt 377

                                                                       
Query: 421 agtggtatacagctataaatctaagacagaaaagagtgagtccagagaattgtgagtata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agtggtatacagctataaatctaagacagaaaagagtgagtccagagaattgtgagtata 317

                                                                       
Query: 481 tggtgaatctatgccacaggtaagatgcaacaactatctcagataacagcaacttaaaat 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 316 tggtgaatctatgccacaggtaagatgcaacaactatctcagataacagcaact-aaaat 258

                                                                    
Query: 541 caaatcataataaaatacctgaacaaaacaaaatcaagtcctttgctcagtggaaga 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caaatcataataaaatacctgaacaaaacaaaatcaagtcctttgctcagtggaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 996
Length adjustment: 10
Effective length of query: 587
Effective length of database: 986
Effective search space:   578782
Effective search space used:   578782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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