BAC Information

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BAC

Clone NameMSMg01-045L15
Chromosome6 (Build37)
Map Location 140,145,051 - 140,145,409
singlet/doubletsinglet
Overlap genenone
Upstream geneEG632971, LOC100043898, Pik3c2g, Plcz1, Capza3
Downstream geneLOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868, LOC664875
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045L15.T7 (MSMg01no045_l15.b1)MSMg01-045L15.TJ (MSMg01no045_l15.g1)
ACCAG276286AG276287
length672756
length of high quality
(start - end)
360 (43 - 402)387 (127 - 513)
definitionCHROMAT_FILE: MSMg01no045_l15.b1 PHD_FILE: MSMg01no045_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:45 2005CHROMAT_FILE: MSMg01no045_l15.g1 PHD_FILE: MSMg01no045_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTTTCCAAGATCCGCGGAATCATCTCTTTTCACACACAGACTTGTAA
ACTGGCCATCAAAGCTAACCTCTCACTTTCTCCCCCTGTGCGATACCATC
CTGTGCATTGAGTAGCTCTGTTTCATAACGTGGATTCTAAGAGACAACCC
GCTTGTTTCTTCCAGTTTCCAGAGGTACTTTGGGAGCCTGTGTGAGTGGA
CCTCTAACTAAGCAAATGTATTAGGAGCATTCTCTGTTTTCTAACTTAAG
CACATCCTTAAGCAAGAGCAGTGTGGTGCATCTGATCTCTACTGTGATGA
GATGAGATACCAGGGTACCACACCACCTACAACCCACTGCTGCCACGGAT
GGAGGGACCACATTGGGTCTCAGCTGGAGAGACCCTTTGAACAGGACAGG
TATGGAGAACACAGAGCAGAGGCCTAGATTCAGAGTAGAGTTTCAACCGA
GACCCTGGTTTGTAGGAACAGAAGACTCCAAGACATTGCTGCTCCAAATG
ATCCATGGTTTCATGGAGCCTGAAGCTATGGAGAATATGACTGACACTAG
TCAGAATCCAGTGTGATGGCCAAGTGTATGGATTAACTGAGGGACAAGAC
TATCAGAGTCAGTGGCATCTTCCATTAATGGCCCTGGTACACTTACGCAG
TGTCGCCTGGTGAGTGTGCTAA
NNNNNNNNNNNNNNNNNCCCCTTTTTTTCCTTNNTTTCTNNTNNCACACN
NNNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCAGAGAGAGTCCAGGAAACAC
ACCTGGAGGAAAGAAAGCCATCAAATGCTAGTATCTTGGGGATTTGAGCT
GGGAGGTAACCAGATTAGAGGATTGGAATAGAGTAATAACTGCTCAGTTG
TGCCCTTAAAGCTTGATAAATAAATATACTAGTGCAACTGGGTAAGAGGA
AAACTGTAATACACTTCTTAAAAAGCTACTACCATTGTAGCATACCATTA
TTTTGGTCATTGCAACTTTTTTACTTTCATTTTTGAAACCAAATTATACT
TTGAAAGCTTCTTCCAGCTTTGCTCTTTCTTAAGATTATGTTGGCTATAC
AAGGTCTTCTTCGCCCCAATAAGAATTAGATCTTTTTCTTACTTTTATCA
GGAAAAAAGAAAAGACAAAGGAGACAGACAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCTGTAGA
TTACTTTTGTCAAGATGAACATGTTTACACAAAGTATCTTTCGAATTATT
CTTGCATTTTAAACTTTCTTTTGATGATGTTGCTAGTCTTCATCGTAAGT
ATTTTATCTCCTAGGTTAATCCTATTTCCTAGTACTTGATTCCTTTTGAT
ATTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_l15.b1 MSMg01no045_l15.b1 CHROMAT_FILE:
MSMg01no045_l15.b1 PHD_FILE: MSMg01no045_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:45 2005
         (360 letters)



>mm_chr6_140144851_140145611
          Length = 761

 Score =  663 bits (343), Expect = 0.0
 Identities = 355/359 (98%), Gaps = 1/359 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgtaaactggccatcaaagctaacctctcactttctccccctgtgcg-ataccatcc 59
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 559 acttgtaaactggccatcaaagctaacctctcactttctccccctgtgggtataccatcc 500

                                                                       
Query: 60  tgtgcattgagtagctctgtttcataacgtggattctaagagacaacccgcttgtttctt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtgcattgagtagctctgtttcataacgtggattctaagagacaacccgcttgtttctt 440

                                                                       
Query: 120 ccagtttccagaggtactttgggagcctgtgtgagtggacctctaactaagcaaatgtat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccagtttccagaggtactttgggagcctgtgtgagtggacctctaactaagcaaatgtat 380

                                                                       
Query: 180 taggagcattctctgttttctaacttaagcacatccttaagcaagagcagtgtggtgcat 239
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taggagcagtctctgttttctaacttaagcacatccttaagcaagagcagtgtggtgcat 320

                                                                       
Query: 240 ctgatctctactgtgatgagatgagataccagggtaccacaccacctacaacccactgct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctgatctctactgtgatgagatgagataccagggtaccacaccacctacaacccactgct 260

                                                                      
Query: 300 gccacggatggagggaccacattgggtctcagctggagagaccctttgaacaggacagg 358
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 259 gccacggatggagggaccacattgggtctcagctggagagatcctttgaacaggacagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 761
Length adjustment: 9
Effective length of query: 351
Effective length of database: 752
Effective search space:   263952
Effective search space used:   263952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)