BAC Information

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BAC

Clone NameMSMg01-045P15
Chromosome6 (Build37)
Map Location 140,144,880 - 140,145,434
singlet/doubletsinglet
Overlap genenone
Upstream geneEG632971, LOC100043898, Pik3c2g, Plcz1, Capza3
Downstream geneLOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868, LOC664875
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045P15.T7 (MSMg01no045_p15.b1)MSMg01-045P15.TJ (MSMg01no045_p15.g1)
ACCAG276469AG276470
length674678
length of high quality
(start - end)
560 (19 - 578)485 (54 - 538)
definitionCHROMAT_FILE: MSMg01no045_p15.b1 PHD_FILE: MSMg01no045_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:03 2005CHROMAT_FILE: MSMg01no045_p15.g1 PHD_FILE: MSMg01no045_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATTCCAGAAATCCGCGGAATTCATCTCTTTCATCCACTCAGAC
TTGTAAACTGGCCATCAAAGCTAACCTCTCACTTTCTCCCCCTGTGGGTA
TACCATCCTGTGCATTGAGTAGCTCTGTTTCATAACGTGGATTCTAAGAG
ACAACCCGCTTGTTTCTTCCAGTTTCCAGAGGTACTTTGGGAGCCTGTGT
GAGTGGACCTCTAACTAAGCAAATGTATTAGGAGCAGTCTCTGTTTTCTA
ACTTAAGCACATCCTTAAGCAAGAGCAGTGTGGTGCATCTGATCTCTACT
GTGATGAGATGAGATACCAGGGTACCACACCACCTACAACCCACTGCTGC
CACGGATGGAGGGACCACATTGGGTCTCAGCTGGAGAGATCCTTTGAACA
GGACAGGGATGGAGAACACAGAGCAGAGGCCTAGATTCAGAGTAGAGTTT
CAACCGAGACCTTGGTTTGTAGGAACAGAAGACTCCAAGACATTGCTGCT
CCAAATGACCCATGGTTTCATGGAGCCTGAAGCTATGGAGAATATGACTG
ACACAAGTCAGAAGCCAGTGTGATGGCCTAGTGTAAGGATTAACTGAGGG
ACAAGACTATCAGAGTCAGTGGCATCTTCCAGTAATGGCCCTGGTACACA
TAGGCAGTGTCGCCTGGTGAGTGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXACCACAGAGAGAGCCAGGAAACACACCTGGAGGAAAGAAAGCCATCAA
ATGCTAGTATCTTGGGGATTTGAGCTGGGAGGTAACCAGATTAGAGGATT
GGAATAGAGTAATAACTGCTCAGTTGTGCCCTTAAAGCTTGATAAATAAA
TATACTAGTGCAACTGGGTAAGAGGAAAACTGTAATACACTTCTTAAAAA
GCTACTACCATTGTAGCATACCATTATTTTGGTCATTGCAACTTTTTTAC
TTTCATTTTTGAAACCAAATTATACTTTGAAAGCTTCTTCCAGCTTTGCT
CTTTCTTAAGATTATGTTGGCTATACAAGGTCTTCTTTGCCCCAATAAGA
ATTAGATCTTTTTCTTACTTTTATCAGGAAAAAAGAAAAGACAAAGGAGA
CAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAAATCTGTATATTACTTTTGTCAAGATGAACATGT
TTACACAAAGTATCTTTCGAAATATTCTTGTATTTTAAACTTTCTTTTGA
TGATGTTGCTAGTCTTCATCGTAAGTTATTTATCTCCTAGGCTAAACCTA
TTCCTATTCTCTTGAATCCTTTTGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_p15.b1 MSMg01no045_p15.b1 CHROMAT_FILE:
MSMg01no045_p15.b1 PHD_FILE: MSMg01no045_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:03 2005
         (560 letters)



>mm_chr6_140144675_140145634
          Length = 960

 Score = 1065 bits (551), Expect = 0.0
 Identities = 554/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcatctctttcatccactcagacttgtaaactggccatcaaagctaacctctcact 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gaattcatctctttcatccactcagacttgtaaactggccatcaaagctaacctctcact 701

                                                                       
Query: 66  ttctccccctgtgggtataccatcctgtgcattgagtagctctgtttcataacgtggatt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ttctccccctgtgggtataccatcctgtgcattgagtagctctgtttcataacgtggatt 641

                                                                       
Query: 126 ctaagagacaacccgcttgtttcttccagtttccagaggtactttgggagcctgtgtgag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ctaagagacaacccgcttgtttcttccagtttccagaggtactttgggagcctgtgtgag 581

                                                                       
Query: 186 tggacctctaactaagcaaatgtattaggagcagtctctgttttctaacttaagcacatc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tggacctctaactaagcaaatgtattaggagcagtctctgttttctaacttaagcacatc 521

                                                                       
Query: 246 cttaagcaagagcagtgtggtgcatctgatctctactgtgatgagatgagataccagggt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cttaagcaagagcagtgtggtgcatctgatctctactgtgatgagatgagataccagggt 461

                                                                       
Query: 306 accacaccacctacaacccactgctgccacggatggagggaccacattgggtctcagctg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 accacaccacctacaacccactgctgccacggatggagggaccacattgggtctcagctg 401

                                                                       
Query: 366 gagagatcctttgaacaggacagggatggagaacacagagcagaggcctagattcagagt 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gagagatcctttgaacaggacagggatggagaacacagagcagaggcctagattcagagt 341

                                                                       
Query: 426 agagtttcaaccgagaccttggtttgtaggaacagaagactccaagacattgctgctcca 485
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agagtttcaaccgagaccctggtttgtaggaacagaagactccaagacattgctgctcca 281

                                                                       
Query: 486 aatgacccatggtttcatggagcctgaagctatggagaatatgactgacacaagtcagaa 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aatgacccatggtttcatggagcctgaagctatggagaatatgactgacacaagtcagaa 221

                          
Query: 546 gccagtgtgatggcc 560
           |||||||||||||||
Sbjct: 220 gccagtgtgatggcc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)