Query= MSMg01no045_p18.b1 MSMg01no045_p18.b1 CHROMAT_FILE:
MSMg01no045_p18.b1 PHD_FILE: MSMg01no045_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:04 2005
(641 letters)
>mm_chr6_15090302_15091342
Length = 1041
Score = 1176 bits (608), Expect = 0.0
Identities = 631/640 (98%), Gaps = 6/640 (0%)
Strand = Plus / Plus
Query: 5 ggaattccaagctaagtgagccatgtggggtactatggccttgcttca-tatctatctca 63
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 ggaattccaagctaagtgagccatgtggggtactatggccttgcttcaatatctatctca 264
Query: 64 cacagaatgtaagccggagtcatgactatcccagaacaaaaggaagcatgcacacattga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacagaatgtaagccggagtcatgactatcccagaacaaaaggaagcatgcacacattga 324
Query: 124 agatgagccaagggagcagacttttcaaagctggatgcttagaagatctacaaggtctca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agatgagccaagggagcagacttttcaaagctggatgcttagaagatctacaaggtctca 384
Query: 184 tgaatctgatgatcatagaaaaggtttgtgaatcttctgagtagtgagatttctaggaaa 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 tgaatctgatgatcatagaaaaggtttgtgaatcttctgagtagtgaaatttctaggaaa 444
Query: 244 catttttttctcttttttagctaagtgatgctataaaaagtcaaccttatttagtgtttt 303
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cattttt--ctcttttttagctaagtgatgctataaaaagtcaaccttatttagtgtttt 502
Query: 304 agcagaatacccaagtgaaagcagactgtgtttagtcagaaccacagaaagcctttggaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agcagaatacccaagtgaaagcagactgtgtttagtcagaaccacagaaagcctttggaa 562
Query: 364 aactcctgtgcaattatttgcatgaacaggctatggaaaagcactgtgtagttctaatgg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aactcctgtgcaattatttgcatgaacaggctatggaaaagcactgtgtagttctaatgg 622
Query: 424 gtataactactgag--gaacaatctccaacaacctgttagcgggaagatgtcaactagaa 481
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 gtataactactgagaggaacaatctccaacaacctgttagcggaaagatgtcaactagaa 682
Query: 482 ccgagatctatggctgatgtgggaaataggctctttgatatatttttcacagattttaca 541
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 683 ccgagatctatggctgatgtgggaaagaggctctttgatatatttttcacagattttaca 742
Query: 542 tggaagaattagaaaacctggctatcaaatttctgtgggatacaaagatgagaagaattc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tggaagaattagaaaacctggctatcaaatttctgtgggatacaaagatgagaagaattc 802
Query: 602 cttctataatttcgtattcaagtatatatcaaggagacag 641
||||||||||| ||||||||||||||||||||||||||||
Sbjct: 803 cttctataatt-cgtattcaagtatatatcaaggagacag 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_p18.g1 MSMg01no045_p18.g1 CHROMAT_FILE:
MSMg01no045_p18.g1 PHD_FILE: MSMg01no045_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:04 2005
(610 letters)
>mm_chr6_15224720_15225729
Length = 1010
Score = 955 bits (494), Expect = 0.0
Identities = 525/540 (97%), Gaps = 10/540 (1%)
Strand = Plus / Minus
Query: 80 tcagactgtttctcaagaagagagacgagcacttctcacagcaatggacagaatggacca 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 tcagactgtttctcaagaagagagacgagcacttctcacagcaatggacagaatggacca 951
Query: 140 tgaagttcattgaataatttttatcgaagaattgaagttaacttaaacattttctaaata 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 tgaagttcattgaataatttttatcgaagaattgaagttaacttaaacattttctaaata 891
Query: 200 aatgaatgagctgaatttatattaagatcatcaaattttgtgttttagattatttacaat 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 aatgaatgagctgaatttatattaagatcatcaaattttgtgttttagattatttacaat 831
Query: 260 atagattatgaa--------acacacacactcacacacattcatcttaacactaaaacta 311
||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ataaattatgaaacacacacacacacacactcacacacattcatcttaacactaaaacta 771
Query: 312 attcctaaagaagttcttgaggacgggacccagatgttagcatttttttttccagcgact 371
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 770 attcctaaagaagttcttgaggacgggacccagatgtttgca-ttttttttccagcgact 712
Query: 372 acatttaagttacattatcattagcctgtattaatattacaaaacaagtgatcttttgaa 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 acatttaagttacattatcattagcctgtattaatattacaaaacaagtgatcttttgaa 652
Query: 432 caaagtaaggtacaagatgatggtgataatattcaggtcctcagcatatcaacaactaca 491
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 caaaataaggtacaagatgatggtgataatattcaggtcctcagcatatcaacaactaca 592
Query: 492 ttgatataacttatatggagttttctaggatttttttttataaagtatttgtcatatgat 551
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 591 ttgatataacttatatggagttttctagtatttttttttataaagtatttgtcatataat 532
Query: 552 ctgaatttctaagcatttaatgctag-aaaaaaaaggtaaaagataattcgggttgcaaa 610
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 531 ctgaatttctaagcatttaatgctagaaaaaaaaaggtaaaagataattcgggttgcaaa 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
