BAC Information

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BAC

Clone NameMSMg01-046A02
Chromosome6 (Build37)
Map Location 13,770,506 - 13,770,947
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik
Downstream geneGpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797, Ppp1r3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046A02.T7 (MSMg01no046_a02.b1)MSMg01-046A02.TJ (MSMg01no046_a02.g1)
ACCAG276491AG276492
length665664
length of high quality
(start - end)
414 (43 - 456)442 (56 - 497)
definitionCHROMAT_FILE: MSMg01no046_a02.b1 PHD_FILE: MSMg01no046_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:05 2005CHROMAT_FILE: MSMg01no046_a02.g1 PHD_FILE: MSMg01no046_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAATATCGAGAGGATCCGCGGAATTCTTCAATGATTTATGAAGGCCAAT
TTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTC
TCAAGGATAAAAGAACCTCTGATGAAATCACCATGCCTGACCTAAAGCTT
TACTGCAGAGCAATTGTGATAAAAACTGCATGGTACTGATATAGAGACAG
ACAAGTAGACCAATGGAATAGAATTAAAAACCCAGAAATGAACCCATACA
CCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAA
AAAGACAGCATTTTCAACAAATGGTGCTGGCACAATGGTGGTTATCATGT
AGAAGGATGCGAATTGATCCATTCCTAACTCCTTGTACTAAGGTCCAATC
TCAGTGGATAAAGAAGCTCCACATAAAACCAGAGACACTGAAACTTATAC
AGGAGAAATGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAACTCC
TGAATAGAAGAGCAATGGCTTGCGCTGTAAGATAGAGAATTGACAAATGG
GATCTCATGAAACTGCAAAGCTTCTGTACGGCCAAAGTCATCATCAATAA
GACAATAAGACCTCCCACATATTGGGGAAAGAATCTTTACCCTATCTAAA
TCCTATAGGTGACTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAATCTGCTCTGATATTATTGCGTAGGAATATTCATAAGATGCATA
AGCTTAGACACGATTAAGTCTATTCTTTTCAGAGCCTTTCACACTGCTTT
TTCCTATGACCTCATCATTGATATGGCTTTGTCCCCTAGAATAGCCTTTT
TAGTCTGTAGACTTAAGACAGCTGTTAACTTTATTCATCCATTCATTTTA
TCCGCAGGCATCACGCTCTTTTTCTATTTTTCTCTCCTATTACTTCGGGT
GCTATGAGACCTTGTTATTGAGTGCCTATGGTACCATGAGTGGATAACTT
TGATTTGTGGCCATGATCTCTCCTTTGCAGGCACCTATGATGTGTGGATC
TAGTTAAATTCCATACAAGAACATGGCATAGCCAACTGAGGTGAACAATC
CTGTAATCCCAACTATCAGGAGGCTAAAGCGGGAGGATTGCCTCAAATTC
AAGACCACCATGAACTAAGCAGTGGTTATCAGAATATCCAGGGTTGAATA
GCAGGACATTATTGGAAGAATTTGTCTTTGAAATATGATTTTAAGGTGTG
CCCCTTACAAGTAAGAAGTACCAAGCAAATTCATGTCTCTGGTGAGGGGA
AATGTGGAAGAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_a02.g1 MSMg01no046_a02.g1 CHROMAT_FILE:
MSMg01no046_a02.g1 PHD_FILE: MSMg01no046_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:06 2005
         (442 letters)



>mm_chr6_13770306_13771147
          Length = 842

 Score =  832 bits (430), Expect = 0.0
 Identities = 439/442 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctgctctgatattattgcgtaggaatattcataagatgcataagcttagacacgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatctgctctgatattattgcgtaggaatattcataagatgcataagcttagacacgatt 260

                                                                       
Query: 61  aagtctattcttttcagagcctttcacactgctttttcctatgacctcatcattgatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtctattcttttcagagcctttcacactgctttttcctatgacctcatcattgatatg 320

                                                                       
Query: 121 gctttgtcccctagaatagcctttttagtctgtagacttaagacagctgttaactttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctttgtcccctagaatagcctttttagtctgtagacttaagacagctgttaactttatt 380

                                                                       
Query: 181 catccattcattttatccgcaggcatcacgctctttttctatttttctctcctattactt 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catccattcattttatccccaggcatcacgctctttttctatttttctctcctattactt 440

                                                                       
Query: 241 cgggtgctatgagaccttgttattgagtgcctatggtaccatgagtggataactttgatt 300
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 441 cgggtgctatgagaccttgttattgagtgcctatggcaccgtgagtggataactttgatt 500

                                                                       
Query: 301 tgtggccatgatctctcctttgcaggcacctatgatgtgtggatctagttaaattccata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtggccatgatctctcctttgcaggcacctatgatgtgtggatctagttaaattccata 560

                                                                       
Query: 361 caagaacatggcatagccaactgaggtgaacaatcctgtaatcccaactatcaggaggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagaacatggcatagccaactgaggtgaacaatcctgtaatcccaactatcaggaggct 620

                                 
Query: 421 aaagcgggaggattgcctcaaa 442
           ||||||||||||||||||||||
Sbjct: 621 aaagcgggaggattgcctcaaa 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)