Query= MSMg01no046_d14.b1 MSMg01no046_d14.b1 CHROMAT_FILE:
MSMg01no046_d14.b1 PHD_FILE: MSMg01no046_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:21 2005
(393 letters)
>mm_chr6_12059662_12060454
Length = 793
Score = 538 bits (278), Expect = e-157
Identities = 305/314 (97%), Gaps = 1/314 (0%)
Strand = Plus / Minus
Query: 8 gaattc-ataaattaccatctaggtatggtggggctcagttgtgatcccagccccaggag 66
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaattctataaattaaaatctaggtatggtggggctcagttgtgatcccagccccaggag 596
Query: 67 gtggggacagcttgatccctggagcttgctggccaaccatcttagcttaacagctgaact 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 atggggacagcttgatccctggagcttgctggccaaccatcttagcttaacagctgaact 536
Query: 127 agatcagatgggaaaacaatgtggttggttcatgtggatcaaaacccagggttgaactct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 535 agatcagatgggaaaacaatgtggttggttcatgtggatcaaaacccagggttaaactct 476
Query: 187 ggcttttatgcacatgcacacatacatgcacccagatgcacaagcaccacttgcacatcc 246
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
Sbjct: 475 ggcttttatgcacatgcacacatacatgcacccagatgcacatgcaccactcgcacatac 416
Query: 247 aaacaaatggtaacattgaatccctgtcctcaaagaactcataagctagaagatacaaca 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 415 aaacaaatggtaacattgaatccctgtcctcaaagaactcataagctagaagatgcaaca 356
Query: 307 cacctgcaacttgt 320
||||||||||||||
Sbjct: 355 cacctgcaacttgt 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_d14.g1 MSMg01no046_d14.g1 CHROMAT_FILE:
MSMg01no046_d14.g1 PHD_FILE: MSMg01no046_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:21 2005
(605 letters)
>mm_chr6_11962971_11963975
Length = 1005
Score = 1007 bits (521), Expect = 0.0
Identities = 554/577 (96%), Gaps = 20/577 (3%)
Strand = Plus / Plus
Query: 1 cacacatgtggcagaagccattaatcctaatatttgtgggtcagggataggagaataatt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cacacatgtggcagaagccattaatcctaatatttgtgggtcagggctaggagaataatt 260
Query: 61 gttagagaccagtctgagttactagtcccatagtgaaactcttccccctcccccataaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttagagaccagtctgagttactagtcccatagtgaaactcttccccctcccccataaat 320
Query: 121 aaataaataaataaataaataaataaataaataaataaataaataaataaataagtaaag 180
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aaataaataaataaataaataaataaataaataaataa----------------gtaaag 364
Query: 181 ctttgtaacaaatttgtgtacaggctagttggtgggactcattccatggcccatgttctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctttgtaacaaatttgtgtacaggctagttggtgggactcattccatggcccatgttctt 424
Query: 241 tttggttttttttttttttt----aatgtttttgttttgtttttgatgactttttggcct 296
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 425 tttggtttttttttttttttttttaatgtttttgttttgtttttgatgactttttggcct 484
Query: 297 tcgttttttaaggttgaatgctacaaccttattctcttaagcaagctatttcttaaaatt 356
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 485 tcgttttttaaggttgaatgctacaaccttattctgttaagcaagctatttcttaaaatt 544
Query: 357 aatatttactaaaatattttattcttttaaactttataagtcactgtgttattatttggt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 545 aatatttactaaaatattttattcttttaaactttataagtcactgtgttattttttggt 604
Query: 417 tttactttatagtgaataagaattataacactaattatggagagggaattttgtccaagc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tttactttatagtgaataagaattataacactaattatggagagggaattttgtccaagc 664
Query: 477 ttctctgggatatttaaagtttgagaaggtgattttagataacttattacttatcaacat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ttctctgggatatttaaagtttgagaaggtgattttagataacttattacttatcaacat 724
Query: 537 tttcatagtcaatgagtataattacattgtacttata 573
|||||||||||||||||||||||||||||||||||||
Sbjct: 725 tttcatagtcaatgagtataattacattgtacttata 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
