BAC Information

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BAC

Clone NameMSMg01-046H09
Chromosome6 (Build37)
Map Location 128,773,823 - 128,773,938
singlet/doubletsinglet
Overlap geneKlrb1d
Upstream geneTspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862
Downstream geneLOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046H09.T7 (MSMg01no046_h09.b1)MSMg01-046H09.TJ (MSMg01no046_h09.g1)
ACCAG276832AG276833
length692687
length of high quality
(start - end)
116 (195 - 310)192 (496 - 687)
definitionCHROMAT_FILE: MSMg01no046_h09.b1 PHD_FILE: MSMg01no046_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:37 2005CHROMAT_FILE: MSMg01no046_h09.g1 PHD_FILE: MSMg01no046_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTCCTAGTCCCTTCCCGCCTGTCACCGTTCCTCCTGACTTGATGC
TCTAAGACATACGATGCATGTGTGTAGAACATACCCTGCAACACCACAGG
GATGTTCTCCCTTTGCATTCGCAGGTCCAACTTCCTAGAATACTCATCTC
TCAGACACTGAACCTTGGTCCCCAGCATCTTTGAGCACTGGACTCCAGCA
TCATCTCCCTAAAAGGCCTGCCTTGATGACTCTGTTTGACATGATGCTGT
CTCTCAAGACAAAACTCTCAAGTTCCACCTAGATGCTTTTCTTGTTGGCA
TTCAGCATCTCAAAGTTGTTGATGCAAGTGTTTATATCACTGATTTTAAA
CTTCACAATAATATAAAATCCACAGGGAGAAAGATGTTTTCCCGATTCTT
TTTTTTTTTTTTTTCCATTTTTAATTAGGCATTTCGCTCATTTACATTTG
CAATGCTATGCCAAAAGTCCCCCATAGCCACCCACCCCCTCTCCCCTACC
CACCCACTCCCCTTTTATGGCCCTGGAGTTCCCCTGAACTGGGGCATATA
AAGTTTGCGCGTCCAATGGGCCTCTCTTTCCAGAGATGGCCGACTAGGCC
ATCTTTTGATGCATATGCCGTTAGAGTCAAGAGCTCCGGTGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTATTTAATCAACAATCTCACTCTCA
GACTCACACTACTACCAACGTCTCATATATCTGAACATACAATGGCATTA
TATATGTTCATTGCTACTGCACTTGGAAAGGCAGTTGAAGACACATCACT
ACTTTCTGCAAATGAGAATATACATACTATATTCTCTGGCCCTCCTAATC
ACATATTCACACAAGAGGACATGAAAATCTGTCTTTCCATCAGCATGAGC
ATTGGCAGCGACTTTATAGATTCTTATGGCTATGAACTCACTAATAAGAT
TATATTTGCACCACACCCTCAGGATCCCTTTGTCTGTGTGGAACGAGTCT
CTGGAGCAAATTGGCAAAGAGTCAGCAGTTGACAGAGAAGCCAGCATGTG
AAATTCTGGAGAATCTGAATGTATTGTCACAAAGTATACCCCAGTCTTAT
ATAGTACAGAAAATTCAAGGTGTTGGGAATCACATCAGGCAAGGTACATT
GAAGTTATCAGGTACAAAACAAAGTAATGACTTCAAAAGGATTTACAGGA
ACAAGGTAAATGTTTACAGTAAAGATAAAGCATTTCTGCCAAGGGTCAGC
TTAGTGACAGGCAAGGATTTTATACTCTAGTGCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_h09.b1 MSMg01no046_h09.b1 CHROMAT_FILE:
MSMg01no046_h09.b1 PHD_FILE: MSMg01no046_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:37 2005
         (116 letters)



>mm_chr6_128773623_128774138
          Length = 516

 Score =  209 bits (108), Expect = 5e-59
 Identities = 114/116 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctctcagacactgaaccttggtccccagcatctttgagcactggactccagcatcat 60
           ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 catctctcagacactgagccttggtccccagcatctttgagcgctggactccagcatcat 260

                                                                   
Query: 61  ctccctaaaaggcctgccttgatgactctgtttgacatgatgctgtctctcaagac 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccctaaaaggcctgccttgatgactctgtttgacatgatgctgtctctcaagac 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)