BAC Information

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BAC

Clone NameMSMg01-046K21
Chromosome6 (Build37)
Map Location 81,544,856 - 81,545,285
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043390, LOC100042991
Downstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046K21.T7 (MSMg01no046_k21.b1)MSMg01-046K21.TJ (MSMg01no046_k21.g1)
ACCAG276998AG276999
length701703
length of high quality
(start - end)
533 (67 - 599)485 (73 - 557)
definitionCHROMAT_FILE: MSMg01no046_k21.b1 PHD_FILE: MSMg01no046_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:53 2005CHROMAT_FILE: MSMg01no046_k21.g1 PHD_FILE: MSMg01no046_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCACCACTATGCCCCTTACCCCATAAAAACCCCTAGCTTTCGAGCC
TCATGGACCGCATCCGTTATCTCCTGTGTGGAATACATGTTGGTCCAGAG
CTCCGTAATTAATTACAGCAAGTTGGGTCCTCATGTTTCTTTGGGTGCCC
TCACACTCCCGAGACTAGAGTAGGGGTCCCCGAAAGGGGGTCTTACAACC
CAAGCCCTTGGAGGAGCCCAGAAGATTGATCGTGAGTTGGATCCCAGATA
TTGGACAGTTGGAGATTGATTTTTGCTTTTGATTGAGACTGTGCCCTGTT
ATTTTTCCCTCTTGAAGGAAGAAAGTATTTAAGTGGAGCCCACATTTAAG
AGACTTTGAATTTTAAATGACATTGGATCTTTTAAAGGGATTGAATTTTT
AATATGTAAAGACTGTGGGACTTTTAAAGTTGTTTAGATCTTGGGGATGA
ATAAGAAACTAAGGGTTGTGATTTACTAGTGATGTGTTTGTGTGTCAAGT
TGACAAGGGGTCAATTGTACTGGCTGGTTTTGGTCAACTTAACACAGGCT
GGAGTTATCACAGAGAAAGGAGCTTCAGTTAGGGAAATGCCTCCATGAGA
TCCAGCTGTAAAGCATTTTCTCATTTAATGATCAAGTGGGAGGCCCTCTT
T
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGGGTGTAGCACAGCATCACTGGACTA
GGGGGTCACATAGTTTTAAATGCATTTGATAAACTATGGCTTCTCAATTT
AGGGAGTTGGTTGGATTAACTTGTATCATCCCATTGAAGTTCATCATTGC
AATGTGCTGTAGACAGCACAAGTCAGACATCTGGAAACTTTACCAAGTGA
TTCTGTCTGGTCTTACCCCAGATTTTAAATTTTTCTTAAAGTTTGTTTTT
AATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCCCTCTCCCCCCCCCTCTCTGTGTGTGCG
TACCCATGTGCACGCTGAGAACAGAAAAGAATACAGGATCCCCTGAAGCT
AGCATTCTAAGCAGTTGTGACCCTCCCCATGAGGGGGCAAGCTGGGAACT
AAACTCAGGTTTGGAAGAGTAGCAAGTGCTCTTAACCACTCAGCCATCTC
TTTATTCTCCCTAGGTTGTATTTCTATTCCTGTTGAAGGGATCTTCTGTG
CTTAATATATTCCCAAAACTCCATGGTACTGTTTACCCTATGATCCTGGC
TCCAGTTGCTGGGAATTTGAATGGGTCTCTGTGTTGCAACTCACCCAAGG
CTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_k21.g1 MSMg01no046_k21.g1 CHROMAT_FILE:
MSMg01no046_k21.g1 PHD_FILE: MSMg01no046_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:53 2005
         (485 letters)



>mm_chr6_81544856_81545740
          Length = 885

 Score =  752 bits (389), Expect = 0.0
 Identities = 428/455 (94%), Gaps = 25/455 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggtgtagcacagcatcactggactagggggtcacatagttttaaatgcatttgataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tggggtgtagcacagcatcactggactagggggtcacatagttttaaatgcatttgataa 371

                                                                       
Query: 61  actatggcttctcaatttagggagttggttggattaacttgtatcatcccattgaagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 actatggcttctcaatttagggagttggttggattaacttgtatcatcccattgaagttc 311

                                                                       
Query: 121 atcattgcaatgtgctgtagacagcacaagtcagacatctggaaactttaccaagtgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atcattgcaatgtgctgtagacagcacaagtcagacatctggaaactttaccaagtgatt 251

                                                                       
Query: 181 ctgtctggtcttaccccagattttaaatttttcttaaagtttgtttttaatctctctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctgtctggtcttaccccagattttaaatttttcttaaagtttgtttttaatctctctctc 191

                                                                       
Query: 241 tctctctctctctctctctctatctctctctctctctctctctctctctctctctctctc 300
           |||||||||||||||||||||  ||||||||||| |                   |||||
Sbjct: 190 tctctctctctctctctctct--ctctctctctc-c-------------------ctctc 153

                                                                       
Query: 301 cctctccccccccctctctgtgtgtgcgtacccatgtgcacgctgagaacagaaaagaat 360
           ||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 152 cctc---ccccccctctctgtgtgtgagtacccatgtgcacgctgagaacagaaaagaat 96

                                                                       
Query: 361 acaggatcccctgaagctagcattctaagcagttgtgaccctccccatgagggggcaagc 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 95  acaggatcccctgaagctagtattctaagcagttgtgaccctccccatgagggggcaagc 36

                                              
Query: 421 tgggaactaaactcaggtttggaagagtagcaagt 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  tgggaactaaactcaggtttggaagagtagcaagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)